Experiment set33S264 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -4.6 -3.2 LysR family transcriptional regulator compare
PS417_27870 -4.1 -2.8 ATP-dependent DNA helicase RecG compare
PS417_23915 -3.8 -4.5 pantoate--beta-alanine ligase compare
PS417_28070 -3.6 -7.9 phosphate ABC transporter ATP-binding protein compare
PS417_22450 -3.5 -2.4 ATP-dependent DNA helicase RuvA compare
PS417_06680 -2.8 -5.0 nuclease PIN compare
PS417_01605 -2.8 -1.9 phosphoglycerate mutase compare
PS417_28050 -2.7 -2.3 hypothetical protein compare
PS417_01915 -2.6 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_24370 -2.6 -1.5 (2Fe-2S)-binding protein compare
PS417_27195 -2.6 -2.1 N-acetylglutamate synthase compare
PS417_04365 -2.5 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_16555 -2.5 -2.4 cupin compare
PS417_10645 -2.5 -6.7 magnesium ABC transporter ATPase compare
PS417_28080 -2.4 -12.3 phosphate ABC transporter permease compare
PS417_04380 -2.3 -1.5 ABC transporter permease compare
PS417_13510 -2.3 -1.6 polyketide cyclase compare
PS417_26990 -2.2 -1.3 RNA pyrophosphohydrolase compare
PS417_08155 -2.2 -2.0 integration host factor subunit beta compare
PS417_21480 -2.1 -1.9 23S rRNA pseudouridylate synthase compare
PS417_26730 -2.0 -1.2 pyrroline-5-carboxylate reductase compare
PS417_16490 -2.0 -1.6 cell division protein FtsK compare
PS417_24600 -1.9 -6.4 hydrogenase compare
PS417_06375 -1.9 -0.7 deoxycytidine triphosphate deaminase compare
PS417_23810 -1.9 -7.3 acetolactate synthase 3 catalytic subunit compare
PS417_22565 -1.9 -0.7 formyltetrahydrofolate deformylase compare
PS417_08125 -1.9 -0.7 prephenate dehydratase compare
PS417_02555 -1.8 -9.7 exoribonuclease R compare
PS417_04390 -1.8 -2.6 toluene tolerance protein compare
PS417_27135 -1.8 -1.0 glutamine synthetase compare
PS417_26775 -1.8 -9.8 thiazole synthase compare
PS417_22375 -1.7 -1.4 cold-shock protein compare
PS417_00655 -1.6 -7.1 DSBA oxidoreductase compare
PS417_14045 -1.6 -3.6 alkyl hydroperoxide reductase compare
PS417_28075 -1.6 -5.4 phosphate ABC transporter permease compare
PS417_06335 -1.6 -2.2 S-formylglutathione hydrolase compare
PS417_02485 -1.6 -2.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_09590 -1.5 -4.4 membrane protein compare
PS417_20855 -1.5 -1.8 hypothetical protein compare
PS417_02975 -1.5 -4.6 3-dehydroquinate dehydratase compare
PS417_08170 -1.5 -8.1 capsular biosynthesis protein compare
PS417_02255 -1.5 -2.6 lipopolysaccharide kinase compare
PS417_11705 -1.5 -5.6 cyclic peptide transporter compare
PS417_24745 -1.4 -2.5 gamma-glutamyl phosphate reductase compare
PS417_00045 -1.4 -1.8 glycerol acyltransferase compare
PS417_05815 -1.4 -3.2 recombinase RecA compare
PS417_12655 -1.4 -3.4 methionine aminopeptidase compare
PS417_23385 -1.4 -5.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_03830 -1.4 -6.9 protein disaggregation chaperone compare
PS417_06770 -1.4 -4.9 multidrug transporter compare
PS417_07710 -1.4 -2.6 membrane protein compare
PS417_01855 -1.3 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_28085 -1.3 -9.5 phosphate-binding protein compare
PS417_08130 -1.3 -2.0 aspartate aminotransferase compare
PS417_27425 -1.3 -6.1 exopolyphosphatase compare
PS417_03260 -1.3 -1.2 5S ribosomal RNA compare
PS417_19350 -1.3 -3.2 GTP cyclohydrolase compare
PS417_00665 -1.3 -6.6 RND transporter compare
PS417_22445 -1.3 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_24935 -1.2 -1.2 hypothetical protein compare
PS417_06775 -1.2 -4.2 antibiotic transporter compare
PS417_00345 -1.2 -2.1 copper-binding protein compare
PS417_23390 -1.2 -5.6 ubiquinol oxidase subunit II compare
PS417_19730 -1.2 -3.6 flagellar biosynthesis protein FliR compare
PS417_16520 -1.2 -2.1 cold-shock protein compare
PS417_22195 -1.2 -3.5 peptidase compare
PS417_23995 -1.2 -0.9 preprotein translocase subunit SecG compare
PS417_03995 -1.1 -3.4 Fe(II)-dependent oxygenase compare
PS417_02270 -1.1 -2.6 carbamoyltransferase compare
PS417_26985 -1.1 -5.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_00385 -1.1 -1.2 Fur family transcriptional regulator compare
PS417_15075 -1.1 -5.7 NAD-glutamate dehydrogenase compare
PS417_26500 -1.1 -4.6 thioesterase compare
PS417_23805 -1.1 -2.8 acetolactate synthase 3 regulatory subunit compare
PS417_27245 -1.1 -1.9 aminotransferase DegT compare
PS417_19850 -1.1 -5.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_01580 -1.1 -1.4 imidazole glycerol phosphate synthase compare
PS417_22520 -1.1 -1.2 histidine kinase compare
PS417_01620 -1.0 -1.8 preprotein translocase subunit SecB compare
PS417_23370 -1.0 -2.4 protoheme IX farnesyltransferase compare
PS417_23375 -1.0 -1.0 cytochrome C oxidase compare
PS417_16065 -1.0 -1.4 3-phytase compare
PS417_27795 -1.0 -0.6 orotate phosphoribosyltransferase compare
PS417_19285 -1.0 -1.1 ankyrin compare
PS417_15465 -1.0 -1.6 carboxynorspermidine decarboxylase compare
PS417_04080 -1.0 -2.4 peptide ABC transporter substrate-binding protein compare
PS417_05590 -1.0 -4.0 iron ABC transporter ATP-binding protein compare
PS417_21320 -1.0 -2.5 transcriptional regulator compare
PS417_19705 -1.0 -2.4 flagellar biosynthesis regulator FlhF compare
PS417_09210 -1.0 -1.4 TetR family transcriptional regulator compare
PS417_19755 -1.0 -1.8 flagellar motor switch protein FliM compare
PS417_24605 -1.0 -2.1 thiamine-phosphate pyrophosphorylase compare
PS417_07615 -1.0 -3.7 TetR family transcriptional regulator compare
PS417_00660 -1.0 -1.9 DSBA oxidoreductase compare
PS417_11460 -1.0 -5.6 divalent metal cation transporter MntH compare
PS417_03475 -0.9 -2.1 type III secretion protein compare
PS417_22620 -0.9 -2.7 pyruvate kinase compare
PS417_03045 -0.9 -1.6 hypothetical protein compare
PS417_13855 -0.9 -1.2 acetyl-CoA acetyltransferase compare
PS417_27605 -0.9 -4.5 hypothetical protein compare
PS417_25405 -0.9 -6.3 catalase compare
PS417_00180 -0.9 -1.7 tryptophan synthase subunit alpha compare
PS417_08220 -0.9 -0.9 epimerase compare
PS417_14040 -0.9 -4.0 alkyl hydroperoxide reductase compare
PS417_22895 -0.9 -3.9 tyrosine recombinase XerD compare
PS417_04585 -0.9 -0.8 hypothetical protein compare
PS417_02865 -0.9 -2.7 peptidase compare
PS417_06365 -0.9 -4.3 RNA polymerase sigma factor compare
PS417_10015 -0.8 -1.0 hypothetical protein compare
PS417_01955 -0.8 -4.9 peptidase compare
PS417_06355 -0.8 -2.0 protein-L-isoaspartate O-methyltransferase compare
PS417_12310 -0.8 -3.5 methionine synthase compare
PS417_20880 -0.8 -1.6 GntR family transcriptional regulator compare
PS417_18055 -0.8 -1.0 general secretion pathway protein GspK compare
PS417_25270 -0.8 -2.1 NrdR family transcriptional regulator compare
PS417_15800 -0.8 -3.9 photosynthetic protein synthase I compare
PS417_17155 -0.8 -1.5 cytochrome B561 compare
PS417_16560 -0.8 -1.5 GNAT family acetyltransferase compare
PS417_02075 -0.8 -2.1 thioesterase compare
PS417_13270 -0.8 -2.0 lipoprotein compare
PS417_18250 -0.8 -1.9 chemotaxis protein compare
PS417_19740 -0.8 -2.7 flagellar biosynthesis protein flip compare
PS417_02950 -0.8 -3.0 tRNA-dihydrouridine synthase B compare
PS417_07640 -0.8 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23900 -0.8 -3.4 poly(A) polymerase compare
PS417_19860 -0.8 -5.5 flagellar hook protein FlgL compare
PS417_12695 -0.8 -3.4 mannitol dehydrogenase compare
PS417_15095 -0.8 -1.7 hypothetical protein compare
PS417_24800 -0.8 -3.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_19675 -0.8 -2.6 chemotaxis protein CheY compare
PS417_05210 -0.8 -3.1 copper oxidase compare
PS417_13755 -0.8 -1.5 oxidoreductase compare
PS417_22935 -0.8 -2.3 hypothetical protein compare
PS417_23910 -0.8 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_00650 -0.7 -0.7 LysR family transcriptional regulator compare
PS417_21570 -0.7 -5.4 flagellar basal body rod protein FlgB compare
PS417_10815 -0.7 -3.2 TetR family transcriptional regulator compare
PS417_07865 -0.7 -1.9 hypothetical protein compare
PS417_14980 -0.7 -0.9 universal stress protein UspA compare
PS417_09625 -0.7 -1.9 sugar ABC transporter substrate-binding protein compare
PS417_03145 -0.7 -1.8 acetyl-CoA acetyltransferase compare
PS417_01270 -0.7 -1.6 iron ABC transporter substrate-binding protein compare
PS417_09865 -0.7 -1.4 hypothetical protein compare
PS417_01285 -0.7 -1.0 haloacid dehalogenase compare
PS417_09420 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_28515 -0.7 -2.1 16S rRNA methyltransferase compare
PS417_08990 -0.7 -2.2 ABC transporter substrate-binding protein compare
PS417_19840 -0.7 -4.6 flagellar cap protein FliD compare
PS417_13305 -0.7 -1.1 hypothetical protein compare
PS417_23380 -0.7 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_22535 -0.7 -2.6 ornithine acetyltransferase compare
PS417_23490 -0.7 -0.7 dihydrofolate reductase compare
PS417_19735 -0.7 -3.2 flagellar biosynthesis protein FliQ compare
PS417_05695 -0.7 -2.6 transcriptional regulator compare
PS417_22735 -0.7 -3.7 thiol oxidoreductase compare
PS417_20985 -0.7 -0.5 porin compare
PS417_21695 -0.7 -1.5 succinylglutamate-semialdehyde dehydrogenase compare
PS417_13490 -0.7 -1.5 hypothetical protein compare
PS417_11940 -0.7 -4.5 TonB-dependent receptor compare
PS417_08540 -0.7 -1.4 RNA helicase compare
PS417_06200 -0.7 -2.9 protein-PII uridylyltransferase compare
PS417_05840 -0.7 -2.3 LuxR family transcriptional regulator compare
PS417_03560 -0.7 -0.9 GTP-binding protein compare
PS417_05025 -0.7 -1.1 maleylacetoacetate isomerase compare
PS417_13185 -0.7 -1.6 RND transporter compare
PS417_02510 -0.7 -2.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_11945 -0.7 -1.1 hypothetical protein compare
PS417_19650 -0.7 -2.2 chemotaxis protein CheW compare
PS417_24125 -0.7 -1.6 hypothetical protein compare
PS417_03990 -0.7 -4.8 ligand-gated channel protein compare
PS417_15285 -0.7 -0.8 type VI secretion protein compare
PS417_10665 -0.7 -1.1 hypothetical protein compare
PS417_25765 -0.7 -1.0 transcriptional regulator compare
PS417_11055 -0.7 -1.3 AraC family transcriptional regulator compare
PS417_04420 -0.7 -4.2 histidinol dehydrogenase compare
PS417_19865 -0.6 -4.3 flagellar hook protein FlgK compare
PS417_11390 -0.6 -2.0 LysR family transcriptional regulator compare
PS417_02695 -0.6 -1.1 protein hupE compare
PS417_11485 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_19790 -0.6 -1.7 ATP synthase compare
PS417_14080 -0.6 -2.2 hypothetical protein compare
PS417_27610 -0.6 -4.3 hypothetical protein compare
PS417_15875 -0.6 -1.4 LuxR family transcriptional regulator compare
PS417_23775 -0.6 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_04865 -0.6 -2.5 molybdenum cofactor biosynthesis protein MoaC compare
PS417_03000 -0.6 -2.6 translation initiation factor Sui1 compare
PS417_28010 -0.6 -1.8 pyridine nucleotide-disulfide oxidoreductase compare
PS417_27435 -0.6 -2.8 polyphosphate kinase compare
PS417_22745 -0.6 -2.4 hypothetical protein compare
PS417_02880 -0.6 -0.9 copper chaperone compare
PS417_08410 -0.6 -0.8 hypothetical protein compare
PS417_22570 -0.6 -0.6 H-NS histone compare
PS417_01560 -0.6 -0.7 imidazoleglycerol-phosphate dehydratase compare
PS417_16710 -0.6 -2.1 hydrolase compare
PS417_19870 -0.6 -2.8 flagellar rod assembly protein FlgJ compare
PS417_14535 -0.6 -1.1 alpha/beta hydrolase compare
PS417_23005 -0.6 -2.5 XRE family transcriptional regulator compare
PS417_19880 -0.6 -3.8 flagellar basal body L-ring protein compare
PS417_09730 -0.6 -1.3 adenylylsulfate kinase compare
PS417_27595 -0.6 -1.0 recombinase XerC compare


Specific Phenotypes

For 1 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms