Experiment set33S263 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_08155 -4.2 -2.9 integration host factor subunit beta compare
PS417_23915 -4.0 -5.5 pantoate--beta-alanine ligase compare
PS417_06680 -3.6 -4.2 nuclease PIN compare
PS417_27865 -3.2 -4.9 LysR family transcriptional regulator compare
PS417_27795 -3.0 -1.3 orotate phosphoribosyltransferase compare
PS417_01915 -2.6 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21480 -2.1 -1.9 23S rRNA pseudouridylate synthase compare
PS417_23810 -2.1 -8.7 acetolactate synthase 3 catalytic subunit compare
PS417_24935 -1.9 -1.7 hypothetical protein compare
PS417_04440 -1.9 -2.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_06375 -1.9 -0.8 deoxycytidine triphosphate deaminase compare
PS417_22565 -1.9 -0.8 formyltetrahydrofolate deformylase compare
PS417_28070 -1.9 -7.6 phosphate ABC transporter ATP-binding protein compare
PS417_08125 -1.8 -0.8 prephenate dehydratase compare
PS417_26775 -1.8 -9.9 thiazole synthase compare
PS417_19350 -1.8 -4.6 GTP cyclohydrolase compare
PS417_22445 -1.7 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_09600 -1.7 -5.1 glycosyl transferase family 1 compare
PS417_19285 -1.7 -2.7 ankyrin compare
PS417_07640 -1.7 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_24605 -1.7 -3.0 thiamine-phosphate pyrophosphorylase compare
PS417_02555 -1.6 -8.8 exoribonuclease R compare
PS417_01620 -1.6 -3.0 preprotein translocase subunit SecB compare
PS417_11705 -1.6 -5.9 cyclic peptide transporter compare
PS417_27195 -1.6 -1.5 N-acetylglutamate synthase compare
PS417_24600 -1.6 -5.0 hydrogenase compare
PS417_27425 -1.6 -6.9 exopolyphosphatase compare
PS417_02485 -1.6 -2.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_09590 -1.6 -6.8 membrane protein compare
PS417_02975 -1.5 -4.9 3-dehydroquinate dehydratase compare
PS417_28050 -1.5 -1.1 hypothetical protein compare
PS417_10645 -1.5 -4.5 magnesium ABC transporter ATPase compare
PS417_16555 -1.5 -1.3 cupin compare
PS417_23805 -1.5 -2.9 acetolactate synthase 3 regulatory subunit compare
PS417_06245 -1.5 -1.7 zinc metallopeptidase RseP compare
PS417_05815 -1.4 -4.0 recombinase RecA compare
PS417_22840 -1.4 -2.0 tRNA-Met compare
PS417_04365 -1.4 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_00180 -1.4 -2.0 tryptophan synthase subunit alpha compare
PS417_14045 -1.3 -3.1 alkyl hydroperoxide reductase compare
PS417_28080 -1.3 -8.1 phosphate ABC transporter permease compare
PS417_02880 -1.3 -1.8 copper chaperone compare
PS417_02415 -1.3 -3.3 phosphoserine phosphatase compare
PS417_01855 -1.3 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_08170 -1.2 -7.0 capsular biosynthesis protein compare
PS417_08410 -1.2 -2.5 hypothetical protein compare
PS417_04380 -1.2 -1.1 ABC transporter permease compare
PS417_24500 -1.1 -2.3 DEAD/DEAH box helicase compare
PS417_18235 -1.1 -2.0 nitrile hydratase compare
PS417_23375 -1.1 -1.8 cytochrome C oxidase compare
PS417_23775 -1.1 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_26260 -1.1 -2.0 hypothetical protein compare
PS417_19675 -1.1 -4.0 chemotaxis protein CheY compare
PS417_19755 -1.0 -2.0 flagellar motor switch protein FliM compare
PS417_27605 -1.0 -3.9 hypothetical protein compare
PS417_18425 -1.0 -1.4 sporulation protein compare
PS417_22520 -1.0 -1.0 histidine kinase compare
PS417_04385 -1.0 -1.4 organic solvent ABC transporter substrate-binding protein compare
PS417_21510 -0.9 -2.0 histidine kinase compare
PS417_09615 -0.9 -2.8 glycosyl transferase family 1 compare
PS417_14280 -0.9 -1.7 hypothetical protein compare
PS417_09440 -0.9 -1.2 MerR family transcriptional regulator compare
PS417_09830 -0.9 -3.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_08540 -0.9 -1.8 RNA helicase compare
PS417_03080 -0.9 -1.1 hypothetical protein compare
PS417_03260 -0.9 -0.7 5S ribosomal RNA compare
PS417_28075 -0.9 -2.6 phosphate ABC transporter permease compare
PS417_19065 -0.9 -1.0 monooxygenase compare
PS417_25700 -0.8 -2.1 cyclic AMP receptor protein compare
PS417_26990 -0.8 -0.6 RNA pyrophosphohydrolase compare
PS417_00655 -0.8 -4.3 DSBA oxidoreductase compare
PS417_07470 -0.8 -1.3 hypothetical protein compare
PS417_23160 -0.8 -1.2 50S rRNA methyltransferase compare
PS417_07710 -0.8 -1.9 membrane protein compare
PS417_24615 -0.8 -1.3 hypothetical protein compare
PS417_03830 -0.8 -4.8 protein disaggregation chaperone compare
PS417_01580 -0.8 -0.8 imidazole glycerol phosphate synthase compare
PS417_11810 -0.8 -1.3 oxidoreductase compare
PS417_04420 -0.8 -4.7 histidinol dehydrogenase compare
PS417_02255 -0.8 -1.4 lipopolysaccharide kinase compare
PS417_07170 -0.8 -2.4 hypothetical protein compare
PS417_23370 -0.8 -2.1 protoheme IX farnesyltransferase compare
PS417_03560 -0.8 -1.0 GTP-binding protein compare
PS417_09625 -0.8 -2.8 sugar ABC transporter substrate-binding protein compare
PS417_27925 -0.8 -3.1 hypothetical protein compare
PS417_02720 -0.8 -0.9 TetR family transcriptional regulator compare
PS417_21630 -0.7 -1.3 magnesium transporter compare
PS417_23900 -0.7 -3.8 poly(A) polymerase compare
PS417_05445 -0.7 -1.2 DNA mismatch repair protein MutT compare
PS417_11400 -0.7 -0.8 phosphoglycerate mutase compare
PS417_10985 -0.7 -1.0 NADH:flavin oxidoreductase compare
PS417_17215 -0.7 -1.7 peptidylprolyl isomerase compare
PS417_04390 -0.7 -1.9 toluene tolerance protein compare
PS417_01995 -0.7 -2.0 hypothetical protein compare
PS417_17565 -0.7 -1.3 branched-chain amino acid aminotransferase compare
PS417_13425 -0.7 -2.0 cupin compare
PS417_00385 -0.7 -1.0 Fur family transcriptional regulator compare
PS417_05025 -0.7 -1.4 maleylacetoacetate isomerase compare
PS417_00650 -0.7 -0.8 LysR family transcriptional regulator compare
PS417_27290 -0.7 -1.5 hypothetical protein compare
PS417_19850 -0.7 -4.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_08680 -0.7 -1.9 flagellar biosynthesis protein FlhB compare
PS417_23390 -0.7 -3.0 ubiquinol oxidase subunit II compare
PS417_06100 -0.7 -1.4 SAM-dependent methyltransferase compare
PS417_28040 -0.7 -2.6 histidine kinase compare
PS417_07940 -0.7 -1.7 hypothetical protein compare
PS417_26985 -0.7 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11390 -0.7 -2.3 LysR family transcriptional regulator compare
PS417_19190 -0.7 -2.0 BolA family transcriptional regulator compare
PS417_08580 -0.7 -2.6 histidine kinase compare
PS417_05575 -0.7 -4.4 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_15035 -0.7 -1.3 alkylhydroperoxidase compare
PS417_13510 -0.7 -0.8 polyketide cyclase compare
PS417_22060 -0.7 -1.0 hypothetical protein compare
PS417_20340 -0.7 -1.7 hypothetical protein compare
PS417_01095 -0.7 -0.7 amino acid ABC transporter ATP-binding protein compare
PS417_22690 -0.7 -1.7 phosphogluconate dehydratase compare
PS417_20030 -0.7 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_03465 -0.7 -1.3 type III secretion protein compare
PS417_02475 -0.7 -1.2 N-acetylmuramoyl-L-alanine amidase compare
PS417_20705 -0.7 -1.4 cbb3-type cytochrome c oxidase subunit II compare
PS417_00185 -0.7 -1.5 tryptophan synthase subunit beta compare
PS417_19605 -0.7 -1.1 hypothetical protein compare
PS417_22935 -0.6 -1.3 hypothetical protein compare
PS417_03995 -0.6 -2.5 Fe(II)-dependent oxygenase compare
PS417_00660 -0.6 -1.7 DSBA oxidoreductase compare
PS417_09235 -0.6 -0.8 molecular chaperone compare
PS417_06205 -0.6 -3.2 methionine aminopeptidase compare
PS417_05595 -0.6 -4.2 ornithine carbamoyltransferase compare
PS417_22895 -0.6 -3.5 tyrosine recombinase XerD compare
PS417_19730 -0.6 -2.2 flagellar biosynthesis protein FliR compare
PS417_16120 -0.6 -2.3 transcriptional regulator compare
PS417_11725 -0.6 -2.1 peptidase M19 compare
PS417_19955 -0.6 -0.9 hypothetical protein compare
PS417_02560 -0.6 -0.8 23S rRNA methyltransferase compare
PS417_24345 -0.6 -2.4 ubiquinol oxidase subunit II compare
PS417_23615 -0.6 -1.3 sulfate transporter compare
PS417_22620 -0.6 -2.2 pyruvate kinase compare
PS417_22570 -0.6 -0.6 H-NS histone compare
PS417_08090 -0.6 -0.6 3-oxoacyl-ACP reductase compare
PS417_09585 -0.6 -3.0 acetyltransferase compare
PS417_11440 -0.6 -1.4 hypothetical protein compare
PS417_14435 -0.6 -2.8 transcriptional regulator compare
PS417_09580 -0.6 -1.2 tyrosyl-trna synthetase compare
PS417_22450 -0.6 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_27490 -0.6 -1.2 hypothetical protein compare
PS417_02070 -0.6 -0.8 membrane protein compare
PS417_16490 -0.6 -0.5 cell division protein FtsK compare
PS417_02870 -0.6 -2.8 TonB-dependent receptor compare
PS417_01560 -0.6 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_27665 -0.6 -2.2 diguanylate cyclase compare
PS417_23385 -0.6 -2.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_14260 -0.6 -1.7 phosphate ABC transporter permease compare
PS417_09325 -0.6 -2.1 peptidase S41 compare
PS417_28085 -0.6 -4.7 phosphate-binding protein compare
PS417_18765 -0.6 -1.7 hypothetical protein compare
PS417_09595 -0.6 -1.7 membrane protein compare
PS417_10435 -0.6 -1.9 serine/threonine protein kinase compare
PS417_22855 -0.6 -2.1 ssDNA exonuclease RecJ compare
PS417_13010 -0.6 -1.0 alpha/beta hydrolase compare
PS417_25390 -0.6 -1.7 MFS transporter compare
PS417_08730 -0.6 -0.8 cytochrome C compare
PS417_02395 -0.6 -1.2 DNA topoisomerase IV subunit B compare
PS417_05710 -0.6 -1.5 hypothetical protein compare
PS417_07855 -0.6 -2.4 hypothetical protein compare
PS417_24290 -0.5 -2.0 hypothetical protein compare
PS417_08510 -0.5 -1.8 LysR family transcriptional regulator compare
PS417_15465 -0.5 -1.3 carboxynorspermidine decarboxylase compare
PS417_15075 -0.5 -3.0 NAD-glutamate dehydrogenase compare
PS417_03000 -0.5 -1.2 translation initiation factor Sui1 compare
PS417_21695 -0.5 -1.7 succinylglutamate-semialdehyde dehydrogenase compare
PS417_22575 -0.5 -3.0 exonuclease I compare
PS417_21320 -0.5 -2.3 transcriptional regulator compare
PS417_11945 -0.5 -1.7 hypothetical protein compare
PS417_10910 -0.5 -1.9 FAD-dependent oxidoreductase compare
PS417_15665 -0.5 -1.3 hypothetical protein compare
PS417_09505 -0.5 -2.0 hypothetical protein compare
PS417_04500 -0.5 -0.7 hypothetical protein compare
PS417_21425 -0.5 -1.0 4-amino-4-deoxychorismate lyase compare
PS417_24495 -0.5 -2.0 NAD(FAD)-utilizing dehydrogenase compare
PS417_27640 -0.5 -0.8 TetR family transcriptional regulator compare
PS417_22195 -0.5 -1.8 peptidase compare
PS417_22705 -0.5 -1.6 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_11820 -0.5 -1.5 histidine kinase compare
PS417_18040 -0.5 -1.0 general secretion pathway protein GspN compare
PS417_08105 -0.5 -4.1 N-ethylammeline chlorohydrolase compare
PS417_18780 -0.5 -0.9 flavin reductase compare
PS417_07565 -0.5 -0.8 hypothetical protein compare
PS417_00940 -0.5 -1.8 sulfate ABC transporter permease compare
PS417_02270 -0.5 -1.4 carbamoyltransferase compare
PS417_16080 -0.5 -1.4 AraC family transcriptional regulator compare
PS417_06200 -0.5 -2.0 protein-PII uridylyltransferase compare
PS417_02865 -0.5 -1.3 peptidase compare
PS417_25720 -0.5 -2.5 anthranilate synthase component II compare
PS417_07620 -0.5 -0.6 beta-hexosaminidase compare
PS417_01605 -0.5 -0.5 phosphoglycerate mutase compare
PS417_14065 -0.5 -2.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_00580 -0.5 -1.9 acyl-CoA dehydrogenase compare
PS417_27910 -0.5 -1.3 PppA compare
PS417_23490 -0.5 -0.5 dihydrofolate reductase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Fraxetin across organisms