Experiment set33S262 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_21480 -4.4 -2.9 23S rRNA pseudouridylate synthase compare
PS417_22570 -4.4 -1.7 H-NS histone compare
PS417_23545 -3.7 -3.6 gamma-glutamyl kinase compare
PS417_01855 -3.7 -4.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_22450 -3.6 -2.3 ATP-dependent DNA helicase RuvA compare
PS417_23915 -3.3 -5.5 pantoate--beta-alanine ligase compare
PS417_28050 -3.1 -2.3 hypothetical protein compare
PS417_06680 -2.9 -5.5 nuclease PIN compare
PS417_05595 -2.7 -9.3 ornithine carbamoyltransferase compare
PS417_23375 -2.7 -2.5 cytochrome C oxidase compare
PS417_04380 -2.3 -1.5 ABC transporter permease compare
PS417_03560 -2.3 -2.2 GTP-binding protein compare
PS417_26990 -2.2 -1.2 RNA pyrophosphohydrolase compare
PS417_23380 -2.2 -3.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_01560 -2.0 -2.6 imidazoleglycerol-phosphate dehydratase compare
PS417_00650 -2.0 -1.3 LysR family transcriptional regulator compare
PS417_01605 -2.0 -1.6 phosphoglycerate mutase compare
PS417_26775 -2.0 -9.0 thiazole synthase compare
PS417_02555 -2.0 -10.2 exoribonuclease R compare
PS417_13510 -1.9 -1.5 polyketide cyclase compare
PS417_21430 -1.9 -1.7 3-oxoacyl-ACP synthase compare
PS417_03260 -1.9 -1.4 5S ribosomal RNA compare
PS417_06375 -1.9 -0.7 deoxycytidine triphosphate deaminase compare
PS417_08125 -1.9 -0.7 prephenate dehydratase compare
PS417_23385 -1.9 -6.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_09590 -1.9 -5.3 membrane protein compare
PS417_27135 -1.9 -1.0 glutamine synthetase compare
PS417_27865 -1.8 -1.8 LysR family transcriptional regulator compare
PS417_10645 -1.8 -4.9 magnesium ABC transporter ATPase compare
PS417_23390 -1.8 -6.6 ubiquinol oxidase subunit II compare
PS417_04390 -1.8 -2.0 toluene tolerance protein compare
PS417_19350 -1.7 -3.9 GTP cyclohydrolase compare
PS417_02510 -1.7 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27425 -1.7 -6.5 exopolyphosphatase compare
PS417_01580 -1.6 -1.9 imidazole glycerol phosphate synthase compare
PS417_08410 -1.6 -1.9 hypothetical protein compare
PS417_23370 -1.6 -2.4 protoheme IX farnesyltransferase compare
PS417_02975 -1.6 -5.3 3-dehydroquinate dehydratase compare
PS417_23025 -1.6 -4.6 murein transglycosylase compare
PS417_28070 -1.5 -6.3 phosphate ABC transporter ATP-binding protein compare
PS417_24600 -1.5 -5.6 hydrogenase compare
PS417_16490 -1.5 -1.3 cell division protein FtsK compare
PS417_04420 -1.5 -8.5 histidinol dehydrogenase compare
PS417_01575 -1.5 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18425 -1.5 -1.7 sporulation protein compare
PS417_09600 -1.4 -4.8 glycosyl transferase family 1 compare
PS417_02880 -1.4 -1.7 copper chaperone compare
PS417_01565 -1.4 -4.2 imidazole glycerol phosphate synthase compare
PS417_08540 -1.4 -2.2 RNA helicase compare
PS417_26530 -1.4 -1.6 hypothetical protein compare
PS417_02485 -1.4 -3.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27815 -1.3 -2.0 hypothetical protein compare
PS417_26605 -1.3 -1.3 malonate decarboxylase subunit beta compare
PS417_01850 -1.3 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_04415 -1.3 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_22935 -1.3 -2.6 hypothetical protein compare
PS417_02270 -1.3 -2.7 carbamoyltransferase compare
PS417_23995 -1.2 -0.9 preprotein translocase subunit SecG compare
PS417_09615 -1.2 -4.1 glycosyl transferase family 1 compare
PS417_17755 -1.2 -2.8 hypothetical protein compare
PS417_28080 -1.2 -8.2 phosphate ABC transporter permease compare
PS417_24605 -1.2 -2.8 thiamine-phosphate pyrophosphorylase compare
PS417_04440 -1.2 -2.2 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_09325 -1.2 -3.4 peptidase S41 compare
PS417_16555 -1.1 -1.3 cupin compare
PS417_26995 -1.1 -5.1 phosphoserine phosphatase compare
PS417_07710 -1.1 -2.2 membrane protein compare
PS417_22445 -1.1 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_22520 -1.1 -1.2 histidine kinase compare
PS417_24745 -1.1 -1.9 gamma-glutamyl phosphate reductase compare
PS417_02255 -1.1 -2.5 lipopolysaccharide kinase compare
PS417_00045 -1.1 -1.5 glycerol acyltransferase compare
PS417_22085 -1.1 -2.1 aldehyde dehydrogenase compare
PS417_27300 -1.1 -0.8 cell division protein ZapA compare
PS417_23950 -1.1 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_22620 -1.1 -3.3 pyruvate kinase compare
PS417_17945 -1.0 -0.9 hypothetical protein compare
PS417_06245 -1.0 -1.2 zinc metallopeptidase RseP compare
PS417_08580 -1.0 -3.4 histidine kinase compare
PS417_23360 -1.0 -1.0 hypothetical protein compare
PS417_15095 -1.0 -2.0 hypothetical protein compare
PS417_14940 -1.0 -1.6 LysR family transcriptional regulator compare
PS417_00355 -1.0 -2.0 metal ABC transporter permease compare
PS417_10675 -1.0 -1.1 TetR family transcriptional regulator compare
PS417_02475 -1.0 -1.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_11705 -1.0 -5.9 cyclic peptide transporter compare
PS417_15090 -1.0 -2.2 hypothetical protein compare
PS417_17215 -1.0 -1.8 peptidylprolyl isomerase compare
PS417_07795 -1.0 -1.5 hypothetical protein compare
PS417_25700 -1.0 -1.8 cyclic AMP receptor protein compare
PS417_10995 -1.0 -1.9 GntR family transcriptional regulator compare
PS417_21425 -1.0 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_09595 -0.9 -3.0 membrane protein compare
PS417_10265 -0.9 -1.6 peptidase compare
PS417_27295 -0.9 -3.2 hypothetical protein compare
PS417_02560 -0.9 -0.9 23S rRNA methyltransferase compare
PS417_23910 -0.9 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_22050 -0.9 -2.9 ribonuclease BN compare
PS417_05860 -0.9 -2.6 hypothetical protein compare
PS417_04365 -0.9 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04115 -0.9 -3.5 alpha/beta hydrolase compare
PS417_22895 -0.9 -5.1 tyrosine recombinase XerD compare
PS417_23775 -0.9 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_25710 -0.9 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_24935 -0.9 -0.9 hypothetical protein compare
PS417_03200 -0.9 -2.1 ArsR family transcriptional regulator compare
PS417_02355 -0.9 -5.2 thiamine biosynthesis protein ThiC compare
PS417_00550 -0.9 -0.9 hypothetical protein compare
PS417_25720 -0.9 -3.9 anthranilate synthase component II compare
PS417_22210 -0.9 -1.5 AraC family transcriptional regulator compare
PS417_27870 -0.9 -1.2 ATP-dependent DNA helicase RecG compare
PS417_01620 -0.9 -2.4 preprotein translocase subunit SecB compare
PS417_09150 -0.9 -1.3 energy transducer TonB compare
PS417_23095 -0.9 -1.0 exodeoxyribonuclease compare
PS417_03000 -0.9 -1.7 translation initiation factor Sui1 compare
PS417_07615 -0.8 -2.9 TetR family transcriptional regulator compare
PS417_26730 -0.8 -0.6 pyrroline-5-carboxylate reductase compare
PS417_22535 -0.8 -2.4 ornithine acetyltransferase compare
PS417_21105 -0.8 -4.7 aminodeoxychorismate synthase compare
PS417_13305 -0.8 -0.8 hypothetical protein compare
PS417_23900 -0.8 -4.5 poly(A) polymerase compare
PS417_26695 -0.8 -1.2 uracil phosphoribosyltransferase compare
PS417_03830 -0.8 -5.1 protein disaggregation chaperone compare
PS417_09585 -0.8 -4.6 acetyltransferase compare
PS417_04385 -0.8 -1.3 organic solvent ABC transporter substrate-binding protein compare
PS417_27305 -0.8 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_06200 -0.8 -3.9 protein-PII uridylyltransferase compare
PS417_01710 -0.8 -3.0 histidine utilization repressor compare
PS417_02395 -0.8 -1.7 DNA topoisomerase IV subunit B compare
PS417_27105 -0.8 -2.7 spermidine/putrescine ABC transporter permease compare
PS417_22875 -0.8 -1.5 hypothetical protein compare
PS417_23810 -0.8 -4.3 acetolactate synthase 3 catalytic subunit compare
PS417_02950 -0.8 -1.4 tRNA-dihydrouridine synthase B compare
PS417_02870 -0.8 -3.6 TonB-dependent receptor compare
PS417_06835 -0.8 -0.8 phospholipase compare
PS417_21320 -0.8 -2.1 transcriptional regulator compare
PS417_28075 -0.7 -2.8 phosphate ABC transporter permease compare
PS417_27605 -0.7 -3.7 hypothetical protein compare
PS417_22405 -0.7 -4.8 7-carboxy-7-deazaguanine synthase compare
PS417_12870 -0.7 -1.0 enoyl-CoA hydratase compare
PS417_17565 -0.7 -2.4 branched-chain amino acid aminotransferase compare
PS417_21625 -0.7 -0.8 DNA-binding protein compare
PS417_12635 -0.7 -1.3 alkanesulfonate monooxygenase compare
PS417_18420 -0.7 -2.1 deoxyribonuclease compare
PS417_02780 -0.7 -2.4 DNA-binding protein compare
PS417_08090 -0.7 -0.6 3-oxoacyl-ACP reductase compare
PS417_10405 -0.7 -0.9 filamentous hemagglutinin compare
PS417_27665 -0.7 -2.3 diguanylate cyclase compare
PS417_08170 -0.7 -4.4 capsular biosynthesis protein compare
PS417_22575 -0.7 -4.3 exonuclease I compare
PS417_19720 -0.7 -1.3 DNA-binding protein compare
PS417_24085 -0.7 -1.6 protein RnfH compare
PS417_17650 -0.7 -2.1 proteinase compare
PS417_22530 -0.7 -2.0 hypothetical protein compare
PS417_05985 -0.7 -1.9 chemotaxis protein CheY compare
PS417_01270 -0.7 -1.4 iron ABC transporter substrate-binding protein compare
PS417_13175 -0.7 -1.7 iron transporter compare
PS417_05365 -0.7 -0.9 FAD-binding protein compare
PS417_02765 -0.7 -1.2 phosphate starvation-inducible protein PsiF compare
PS417_21760 -0.7 -1.1 hypothetical protein compare
PS417_01955 -0.7 -4.5 peptidase compare
PS417_22400 -0.7 -4.0 7-cyano-7-deazaguanine synthase compare
PS417_06465 -0.7 -1.8 transcriptional regulator compare
PS417_20880 -0.7 -1.8 GntR family transcriptional regulator compare
PS417_04585 -0.7 -1.0 hypothetical protein compare
PS417_22375 -0.7 -0.7 cold-shock protein compare
PS417_01915 -0.7 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_03705 -0.7 -3.4 2-alkenal reductase compare
PS417_21510 -0.7 -1.0 histidine kinase compare
PS417_06775 -0.7 -2.6 antibiotic transporter compare
PS417_20725 -0.7 -1.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_08990 -0.7 -2.5 ABC transporter substrate-binding protein compare
PS417_02455 -0.7 -2.4 putative transporter, required for glycine utilization (from data) compare
PS417_23825 -0.7 -2.7 penicillin-binding protein compare
PS417_07170 -0.7 -1.7 hypothetical protein compare
PS417_04170 -0.7 -2.1 stringent starvation protein A compare
PS417_22690 -0.7 -2.6 phosphogluconate dehydratase compare
PS417_28085 -0.7 -4.9 phosphate-binding protein compare
PS417_18355 -0.6 -3.0 DNA-binding protein compare
PS417_01425 -0.6 -1.9 AraC family transcriptional regulator compare
PS417_06770 -0.6 -2.2 multidrug transporter compare
PS417_07695 -0.6 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_07950 -0.6 -1.4 MFS transporter compare
PS417_23805 -0.6 -1.8 acetolactate synthase 3 regulatory subunit compare
PS417_24310 -0.6 -1.4 ankyrin compare
PS417_21780 -0.6 -2.3 argininosuccinate lyase compare
PS417_05815 -0.6 -1.7 recombinase RecA compare
PS417_11390 -0.6 -1.4 LysR family transcriptional regulator compare
PS417_09830 -0.6 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_00975 -0.6 -1.0 hypothetical protein compare
PS417_27110 -0.6 -2.3 spermidine/putrescine ABC transporter permease compare
PS417_17780 -0.6 -0.9 Ais protein compare
PS417_20030 -0.6 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_27315 -0.6 -0.6 hypothetical protein compare
PS417_06490 -0.6 -2.4 hypothetical protein compare
PS417_16310 -0.6 -2.1 membrane protein compare
PS417_11965 -0.6 -0.8 GCN5 family acetyltransferase compare
PS417_24620 -0.6 -1.5 hypothetical protein compare
PS417_14425 -0.6 -1.9 alkylhydroperoxidase compare
PS417_14815 -0.6 -2.0 diguanylate cyclase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms