Experiment set33S258 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.3 -5.2 pantoate--beta-alanine ligase compare
PS417_22450 -3.5 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_28050 -3.4 -2.6 hypothetical protein compare
PS417_27865 -2.7 -2.9 LysR family transcriptional regulator compare
PS417_06680 -2.4 -5.4 nuclease PIN compare
PS417_23805 -2.4 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_26605 -2.4 -1.6 malonate decarboxylase subunit beta compare
PS417_19350 -2.4 -4.2 GTP cyclohydrolase compare
PS417_10645 -2.3 -6.0 magnesium ABC transporter ATPase compare
PS417_02555 -2.3 -11.3 exoribonuclease R compare
PS417_01095 -2.2 -1.3 amino acid ABC transporter ATP-binding protein compare
PS417_21480 -2.1 -1.7 23S rRNA pseudouridylate synthase compare
PS417_23380 -2.0 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_02975 -2.0 -4.0 3-dehydroquinate dehydratase compare
PS417_16490 -2.0 -1.4 cell division protein FtsK compare
PS417_02880 -2.0 -1.7 copper chaperone compare
PS417_01855 -1.9 -2.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_08125 -1.9 -0.6 prephenate dehydratase compare
PS417_06375 -1.9 -0.6 deoxycytidine triphosphate deaminase compare
PS417_22565 -1.8 -0.6 formyltetrahydrofolate deformylase compare
PS417_26775 -1.8 -6.8 thiazole synthase compare
PS417_03260 -1.8 -1.3 5S ribosomal RNA compare
PS417_23810 -1.8 -6.9 acetolactate synthase 3 catalytic subunit compare
PS417_24600 -1.7 -6.8 hydrogenase compare
PS417_21625 -1.7 -1.2 DNA-binding protein compare
PS417_23995 -1.7 -1.0 preprotein translocase subunit SecG compare
PS417_27195 -1.6 -1.3 N-acetylglutamate synthase compare
PS417_06205 -1.6 -6.6 methionine aminopeptidase compare
PS417_04875 -1.6 -1.6 molybdenum cofactor biosynthesis protein MoaE compare
PS417_21425 -1.6 -1.8 4-amino-4-deoxychorismate lyase compare
PS417_27425 -1.5 -5.0 exopolyphosphatase compare
PS417_23385 -1.5 -6.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_02485 -1.5 -2.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_11705 -1.5 -5.0 cyclic peptide transporter compare
PS417_18425 -1.5 -1.5 sporulation protein compare
PS417_19955 -1.5 -1.7 hypothetical protein compare
PS417_22570 -1.5 -0.9 H-NS histone compare
PS417_05595 -1.5 -6.1 ornithine carbamoyltransferase compare
PS417_24605 -1.4 -2.7 thiamine-phosphate pyrophosphorylase compare
PS417_02255 -1.4 -2.4 lipopolysaccharide kinase compare
PS417_27870 -1.4 -2.1 ATP-dependent DNA helicase RecG compare
PS417_02270 -1.4 -2.5 carbamoyltransferase compare
PS417_09590 -1.4 -2.5 membrane protein compare
PS417_08170 -1.4 -6.9 capsular biosynthesis protein compare
PS417_10480 -1.4 -2.5 glutathione S-transferase compare
PS417_23900 -1.4 -6.0 poly(A) polymerase compare
PS417_21105 -1.3 -6.8 aminodeoxychorismate synthase compare
PS417_01605 -1.3 -1.2 phosphoglycerate mutase compare
PS417_23390 -1.3 -6.0 ubiquinol oxidase subunit II compare
PS417_15325 -1.3 -1.4 type VI secretion protein compare
PS417_01290 -1.3 -2.0 ADP-ribose diphosphatase compare
PS417_25225 -1.3 -2.0 MFS transporter compare
PS417_25720 -1.3 -4.5 anthranilate synthase component II compare
PS417_22935 -1.3 -3.3 hypothetical protein compare
PS417_08130 -1.3 -1.4 aspartate aminotransferase compare
PS417_16555 -1.3 -1.2 cupin compare
PS417_02720 -1.3 -1.0 TetR family transcriptional regulator compare
PS417_06145 -1.2 -1.2 hypothetical protein compare
PS417_15160 -1.2 -1.5 hypothetical protein compare
PS417_22445 -1.2 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_01565 -1.2 -4.6 imidazole glycerol phosphate synthase compare
PS417_04385 -1.2 -1.6 organic solvent ABC transporter substrate-binding protein compare
PS417_23370 -1.2 -2.6 protoheme IX farnesyltransferase compare
PS417_16775 -1.2 -2.5 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_02510 -1.2 -2.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_09600 -1.2 -3.0 glycosyl transferase family 1 compare
PS417_04380 -1.1 -0.9 ABC transporter permease compare
PS417_03380 -1.1 -1.2 hypothetical protein compare
PS417_22530 -1.1 -3.5 hypothetical protein compare
PS417_26985 -1.1 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05695 -1.1 -3.5 transcriptional regulator compare
PS417_08155 -1.1 -1.0 integration host factor subunit beta compare
PS417_04365 -1.1 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_00345 -1.1 -1.4 copper-binding protein compare
PS417_03815 -1.0 -2.0 DNA transporter compare
PS417_14280 -1.0 -2.6 hypothetical protein compare
PS417_01580 -1.0 -1.1 imidazole glycerol phosphate synthase compare
PS417_25710 -1.0 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_13290 -1.0 -2.8 AraC family transcriptional regulator compare
PS417_27795 -1.0 -0.5 orotate phosphoribosyltransferase compare
PS417_22520 -1.0 -1.0 histidine kinase compare
PS417_07640 -1.0 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_03830 -1.0 -5.5 protein disaggregation chaperone compare
PS417_01560 -1.0 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_26120 -1.0 -1.8 hypothetical protein compare
PS417_26850 -1.0 -0.8 twin-arginine translocation pathway signal protein compare
PS417_25825 -1.0 -2.2 sulfurtransferase compare
PS417_27245 -1.0 -1.6 aminotransferase DegT compare
PS417_03465 -1.0 -0.9 type III secretion protein compare
PS417_04290 -1.0 -2.0 hypothetical protein compare
PS417_23775 -1.0 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_14045 -1.0 -3.7 alkyl hydroperoxide reductase compare
PS417_01575 -1.0 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_20855 -0.9 -0.8 hypothetical protein compare
PS417_09595 -0.9 -3.3 membrane protein compare
PS417_08335 -0.9 -1.0 hypothetical protein compare
PS417_07615 -0.9 -3.2 TetR family transcriptional regulator compare
PS417_21850 -0.9 -1.1 LysR family transcriptional regulator compare
PS417_19645 -0.9 -2.1 chemotaxis protein compare
PS417_28510 -0.9 -3.2 chromosome partitioning protein compare
PS417_07560 -0.9 -0.9 universal stress protein UspA compare
PS417_05815 -0.9 -2.3 recombinase RecA compare
PS417_08410 -0.9 -1.3 hypothetical protein compare
PS417_26420 -0.9 -1.4 hypothetical protein compare
PS417_19655 -0.9 -2.8 chemotaxis protein CheW compare
PS417_08365 -0.9 -0.9 hypothetical protein compare
PS417_22895 -0.9 -4.9 tyrosine recombinase XerD compare
PS417_19675 -0.9 -2.7 chemotaxis protein CheY compare
PS417_04585 -0.9 -0.8 hypothetical protein compare
PS417_28070 -0.9 -3.5 phosphate ABC transporter ATP-binding protein compare
PS417_02175 -0.9 -2.5 transcriptional regulator compare
PS417_01435 -0.9 -1.1 hypothetical protein compare
PS417_06350 -0.9 -4.4 stationary phase survival protein SurE compare
PS417_24535 -0.9 -1.6 membrane protein compare
PS417_09615 -0.9 -2.5 glycosyl transferase family 1 compare
PS417_15135 -0.9 -1.2 hypothetical protein compare
PS417_18235 -0.9 -1.7 nitrile hydratase compare
PS417_07710 -0.9 -2.1 membrane protein compare
PS417_16715 -0.8 -1.1 DoxX family protein compare
PS417_22575 -0.8 -4.1 exonuclease I compare
PS417_19065 -0.8 -0.8 monooxygenase compare
PS417_27605 -0.8 -3.7 hypothetical protein compare
PS417_13645 -0.8 -1.2 ABC transporter compare
PS417_09035 -0.8 -1.8 hypothetical protein compare
PS417_00485 -0.8 -1.9 ABC transporter permease compare
PS417_02865 -0.8 -1.5 peptidase compare
PS417_03935 -0.8 -2.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_02225 -0.8 -1.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_02395 -0.8 -1.8 DNA topoisomerase IV subunit B compare
PS417_17795 -0.8 -1.3 ABC transporter permease compare
PS417_26040 -0.8 -2.4 malate synthase compare
PS417_08580 -0.8 -3.3 histidine kinase compare
PS417_03385 -0.8 -0.9 flavin reductase compare
PS417_09625 -0.8 -1.9 sugar ABC transporter substrate-binding protein compare
PS417_11930 -0.8 -3.7 hypothetical protein compare
PS417_01620 -0.8 -2.0 preprotein translocase subunit SecB compare
PS417_09915 -0.8 -1.0 hypothetical protein compare
PS417_18020 -0.8 -1.3 hypothetical protein compare
PS417_14940 -0.8 -1.2 LysR family transcriptional regulator compare
PS417_04390 -0.8 -1.4 toluene tolerance protein compare
PS417_07695 -0.8 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_16560 -0.8 -1.4 GNAT family acetyltransferase compare
PS417_26685 -0.8 -1.0 hypothetical protein compare
PS417_21630 -0.8 -1.2 magnesium transporter compare
PS417_00550 -0.8 -0.8 hypothetical protein compare
PS417_00175 -0.8 -0.8 CigR compare
PS417_11810 -0.8 -2.1 oxidoreductase compare
PS417_07245 -0.8 -1.2 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_04420 -0.8 -4.3 histidinol dehydrogenase compare
PS417_09210 -0.7 -1.2 TetR family transcriptional regulator compare
PS417_00045 -0.7 -1.0 glycerol acyltransferase compare
PS417_16510 -0.7 -2.4 Clp protease ClpX compare
PS417_03525 -0.7 -0.9 hypothetical protein compare
PS417_04115 -0.7 -3.1 alpha/beta hydrolase compare
PS417_11400 -0.7 -1.2 phosphoglycerate mutase compare
PS417_02105 -0.7 -1.6 acyl carrier protein compare
PS417_27490 -0.7 -1.6 hypothetical protein compare
PS417_15110 -0.7 -3.1 protein BatD compare
PS417_02480 -0.7 -3.0 DNA mismatch repair protein compare
PS417_16475 -0.7 -1.9 camphor resistance protein CrcB compare
PS417_00925 -0.7 -1.5 hypothetical protein compare
PS417_06365 -0.7 -4.3 RNA polymerase sigma factor compare
PS417_07120 -0.7 -2.9 RNA polymerase sigma-H factor compare
PS417_18445 -0.7 -1.9 glycerol-3-phosphatase compare
PS417_20170 -0.7 -1.4 hypothetical protein compare
PS417_22400 -0.7 -4.4 7-cyano-7-deazaguanine synthase compare
PS417_02870 -0.7 -3.5 TonB-dependent receptor compare
PS417_08220 -0.7 -0.6 epimerase compare
PS417_01270 -0.7 -1.2 iron ABC transporter substrate-binding protein compare
PS417_13055 -0.7 -1.4 aminotransferase compare
PS417_21845 -0.7 -0.9 membrane protein compare
PS417_09325 -0.7 -2.5 peptidase S41 compare
PS417_17995 -0.7 -1.8 hypothetical protein compare
PS417_21320 -0.7 -1.6 transcriptional regulator compare
PS417_02670 -0.7 -1.7 ABC transporter compare
PS417_06980 -0.6 -3.0 membrane protein compare
PS417_09695 -0.6 -1.1 hydrolase compare
PS417_19160 -0.6 -2.2 hypothetical protein compare
PS417_17845 -0.6 -3.4 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
PS417_03000 -0.6 -2.0 translation initiation factor Sui1 compare
PS417_16520 -0.6 -1.4 cold-shock protein compare
PS417_23375 -0.6 -1.0 cytochrome C oxidase compare
PS417_14760 -0.6 -3.4 membrane protein compare
PS417_10840 -0.6 -1.2 amidase compare
PS417_22800 -0.6 -2.5 heme iron utilization protein compare
PS417_18355 -0.6 -4.0 DNA-binding protein compare
PS417_20985 -0.6 -0.4 porin compare
PS417_10060 -0.6 -1.2 hypothetical protein compare
PS417_24345 -0.6 -2.4 ubiquinol oxidase subunit II compare
PS417_05130 -0.6 -1.6 glutaredoxin compare
PS417_00190 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_20775 -0.6 -1.6 coproporphyrinogen III oxidase compare
PS417_11725 -0.6 -2.2 peptidase M19 compare
PS417_26335 -0.6 -1.3 BetI family transcriptional regulator compare
PS417_15915 -0.6 -1.0 hypothetical protein compare
PS417_08650 -0.6 -1.5 transcriptional regulator compare
PS417_17945 -0.6 -0.5 hypothetical protein compare
PS417_23080 -0.6 -2.0 sugar ABC transporter ATPase compare
PS417_17440 -0.6 -1.3 beta-lactamase compare
PS417_04410 -0.6 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress 80% Methanol across organisms