Experiment set33S257 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -5.5 -3.8 pantoate--beta-alanine ligase compare
PS417_21480 -4.4 -2.7 23S rRNA pseudouridylate synthase compare
PS417_16555 -3.8 -2.6 cupin compare
PS417_00385 -3.7 -1.9 Fur family transcriptional regulator compare
PS417_19350 -2.7 -6.3 GTP cyclohydrolase compare
PS417_04365 -2.6 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22445 -2.5 -3.7 ATP-dependent DNA helicase RuvB compare
PS417_28050 -2.4 -2.0 hypothetical protein compare
PS417_09600 -2.4 -3.7 glycosyl transferase family 1 compare
PS417_05595 -2.4 -9.0 ornithine carbamoyltransferase compare
PS417_09590 -2.4 -5.3 membrane protein compare
PS417_22450 -2.3 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_04380 -2.3 -1.4 ABC transporter permease compare
PS417_20855 -2.3 -1.8 hypothetical protein compare
PS417_27195 -2.3 -1.3 N-acetylglutamate synthase compare
PS417_06680 -2.3 -5.4 nuclease PIN compare
PS417_09615 -2.2 -4.8 glycosyl transferase family 1 compare
PS417_26990 -2.2 -1.1 RNA pyrophosphohydrolase compare
PS417_08155 -2.2 -1.6 integration host factor subunit beta compare
PS417_26730 -2.1 -1.0 pyrroline-5-carboxylate reductase compare
PS417_21430 -2.0 -1.9 3-oxoacyl-ACP synthase compare
PS417_27870 -2.0 -3.0 ATP-dependent DNA helicase RecG compare
PS417_03260 -2.0 -1.4 5S ribosomal RNA compare
PS417_22565 -1.9 -0.7 formyltetrahydrofolate deformylase compare
PS417_08125 -1.9 -0.7 prephenate dehydratase compare
PS417_06375 -1.9 -0.7 deoxycytidine triphosphate deaminase compare
PS417_05815 -1.9 -5.1 recombinase RecA compare
PS417_02485 -1.8 -3.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_26775 -1.8 -8.8 thiazole synthase compare
PS417_09595 -1.8 -4.1 membrane protein compare
PS417_02555 -1.8 -9.7 exoribonuclease R compare
PS417_08130 -1.8 -2.3 aspartate aminotransferase compare
PS417_09585 -1.8 -8.2 acetyltransferase compare
PS417_24600 -1.7 -6.5 hydrogenase compare
PS417_21625 -1.6 -1.2 DNA-binding protein compare
PS417_16490 -1.6 -1.2 cell division protein FtsK compare
PS417_24605 -1.5 -3.3 thiamine-phosphate pyrophosphorylase compare
PS417_02255 -1.5 -2.1 lipopolysaccharide kinase compare
PS417_23370 -1.5 -4.0 protoheme IX farnesyltransferase compare
PS417_10645 -1.5 -4.2 magnesium ABC transporter ATPase compare
PS417_02975 -1.4 -4.1 3-dehydroquinate dehydratase compare
PS417_27425 -1.3 -5.4 exopolyphosphatase compare
PS417_23380 -1.3 -2.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_01575 -1.3 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23805 -1.3 -2.8 acetolactate synthase 3 regulatory subunit compare
PS417_03145 -1.2 -2.4 acetyl-CoA acetyltransferase compare
PS417_23385 -1.2 -6.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_00345 -1.2 -1.5 copper-binding protein compare
PS417_22895 -1.2 -4.6 tyrosine recombinase XerD compare
PS417_27795 -1.2 -0.6 orotate phosphoribosyltransferase compare
PS417_27300 -1.2 -0.8 cell division protein ZapA compare
PS417_21655 -1.2 -1.3 aspartate kinase compare
PS417_27245 -1.2 -2.0 aminotransferase DegT compare
PS417_09625 -1.2 -2.5 sugar ABC transporter substrate-binding protein compare
PS417_23910 -1.1 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_14535 -1.1 -1.8 alpha/beta hydrolase compare
PS417_15135 -1.1 -1.5 hypothetical protein compare
PS417_02950 -1.1 -1.6 tRNA-dihydrouridine synthase B compare
PS417_18425 -1.1 -1.4 sporulation protein compare
PS417_11705 -1.1 -5.4 cyclic peptide transporter compare
PS417_13510 -1.1 -1.0 polyketide cyclase compare
PS417_28225 -1.1 -1.3 hypothetical protein compare
PS417_01580 -1.1 -1.3 imidazole glycerol phosphate synthase compare
PS417_05695 -1.1 -3.0 transcriptional regulator compare
PS417_22530 -1.1 -3.5 hypothetical protein compare
PS417_21105 -1.0 -6.3 aminodeoxychorismate synthase compare
PS417_01565 -1.0 -3.8 imidazole glycerol phosphate synthase compare
PS417_23545 -1.0 -1.6 gamma-glutamyl kinase compare
PS417_23900 -1.0 -6.0 poly(A) polymerase compare
PS417_01605 -1.0 -1.0 phosphoglycerate mutase compare
PS417_25720 -1.0 -5.4 anthranilate synthase component II compare
PS417_06895 -1.0 -2.5 DNA-binding protein compare
PS417_04080 -1.0 -1.9 peptide ABC transporter substrate-binding protein compare
PS417_00705 -1.0 -0.9 MarR family transcriptional regulator compare
PS417_23810 -1.0 -4.7 acetolactate synthase 3 catalytic subunit compare
PS417_00650 -1.0 -0.8 LysR family transcriptional regulator compare
PS417_08540 -0.9 -1.7 RNA helicase compare
PS417_01850 -0.9 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_10675 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_03830 -0.9 -4.9 protein disaggregation chaperone compare
PS417_18235 -0.9 -2.3 nitrile hydratase compare
PS417_22535 -0.9 -4.4 ornithine acetyltransferase compare
PS417_01620 -0.9 -2.4 preprotein translocase subunit SecB compare
PS417_08170 -0.9 -5.1 capsular biosynthesis protein compare
PS417_21425 -0.9 -1.5 4-amino-4-deoxychorismate lyase compare
PS417_09085 -0.9 -1.4 hypothetical protein compare
PS417_23375 -0.9 -1.4 cytochrome C oxidase compare
PS417_23250 -0.9 -3.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_25155 -0.9 -1.6 hypothetical protein compare
PS417_01855 -0.9 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_27585 -0.9 -0.8 diaminopimelate epimerase compare
PS417_26755 -0.9 -2.1 nucleoside-triphosphate diphosphatase compare
PS417_16510 -0.9 -2.2 Clp protease ClpX compare
PS417_24460 -0.9 -1.4 hypothetical protein compare
PS417_23025 -0.8 -2.9 murein transglycosylase compare
PS417_08685 -0.8 -1.1 flagellar hook-length control protein FliK compare
PS417_04385 -0.8 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_05500 -0.8 -2.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_23390 -0.8 -3.5 ubiquinol oxidase subunit II compare
PS417_21320 -0.8 -2.3 transcriptional regulator compare
PS417_22260 -0.8 -2.5 segregation and condensation protein B compare
PS417_22040 -0.8 -1.9 GNAT family acetyltransferase compare
PS417_05860 -0.8 -1.9 hypothetical protein compare
PS417_09620 -0.8 -4.3 lipopolysaccharide biosynthesis protein compare
PS417_19520 -0.8 -1.5 transcriptional regulator compare
PS417_09605 -0.8 -1.8 glycosyl transferase compare
PS417_18455 -0.8 -1.8 hypothetical protein compare
PS417_28515 -0.8 -1.8 16S rRNA methyltransferase compare
PS417_20880 -0.8 -1.2 GntR family transcriptional regulator compare
PS417_00535 -0.8 -1.4 Holliday junction resolvase compare
PS417_24615 -0.8 -0.9 hypothetical protein compare
PS417_01915 -0.7 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_26530 -0.7 -0.9 hypothetical protein compare
PS417_02395 -0.7 -1.5 DNA topoisomerase IV subunit B compare
PS417_02775 -0.7 -2.8 heat-shock protein compare
PS417_06835 -0.7 -1.2 phospholipase compare
PS417_08580 -0.7 -3.2 histidine kinase compare
PS417_14395 -0.7 -2.0 fe2+ zn2+ uptake regulation protein compare
PS417_25390 -0.7 -2.3 MFS transporter compare
PS417_02870 -0.7 -3.5 TonB-dependent receptor compare
PS417_09210 -0.7 -1.1 TetR family transcriptional regulator compare
PS417_04650 -0.7 -0.3 D-alanine--D-alanine ligase compare
PS417_14755 -0.7 -1.7 UV damage repair endonuclease UvdE compare
PS417_14200 -0.7 -1.6 hypothetical protein compare
PS417_27605 -0.7 -4.0 hypothetical protein compare
PS417_01710 -0.7 -2.2 histidine utilization repressor compare
PS417_04420 -0.7 -4.3 histidinol dehydrogenase compare
PS417_19835 -0.7 -0.9 flagellar biosynthesis protein FliS compare
PS417_13270 -0.7 -2.4 lipoprotein compare
PS417_11300 -0.7 -2.7 general secretion pathway protein GspE compare
PS417_23595 -0.7 -2.6 D-aminoacylase compare
PS417_19675 -0.7 -3.0 chemotaxis protein CheY compare
PS417_07305 -0.7 -1.9 3-beta hydroxysteroid dehydrogenase compare
PS417_06675 -0.7 -2.0 ATP-dependent helicase compare
PS417_18070 -0.7 -0.8 general secretion pathway protein GspH compare
PS417_16275 -0.7 -1.7 hypothetical protein compare
PS417_27835 -0.7 -2.8 endoribonuclease compare
PS417_27865 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_01920 -0.7 -0.7 ATP-dependent protease subunit HslV compare
PS417_20985 -0.7 -0.4 porin compare
PS417_06335 -0.7 -1.4 S-formylglutathione hydrolase compare
PS417_24935 -0.7 -0.7 hypothetical protein compare
PS417_08025 -0.7 -1.0 acetylornithine aminotransferase compare
PS417_07640 -0.7 -1.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_02880 -0.7 -0.8 copper chaperone compare
PS417_22195 -0.7 -3.3 peptidase compare
PS417_07565 -0.7 -1.5 hypothetical protein compare
PS417_02765 -0.6 -1.1 phosphate starvation-inducible protein PsiF compare
PS417_00465 -0.6 -2.2 hypothetical protein compare
PS417_23170 -0.6 -1.2 FeS assembly protein IscX compare
PS417_27135 -0.6 -0.4 glutamine synthetase compare
PS417_27705 -0.6 -1.0 amino acid dehydrogenase compare
PS417_22400 -0.6 -3.5 7-cyano-7-deazaguanine synthase compare
PS417_11945 -0.6 -1.6 hypothetical protein compare
PS417_03740 -0.6 -1.5 peptidylprolyl isomerase compare
PS417_10040 -0.6 -0.7 MFS transporter compare
PS417_15895 -0.6 -2.1 iron dicitrate transport regulator FecR compare
PS417_01435 -0.6 -0.9 hypothetical protein compare
PS417_08410 -0.6 -0.9 hypothetical protein compare
PS417_02225 -0.6 -1.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_01270 -0.6 -1.3 iron ABC transporter substrate-binding protein compare
PS417_28035 -0.6 -2.5 transcriptional regulator PhoB compare
PS417_19790 -0.6 -2.2 ATP synthase compare
PS417_08590 -0.6 -1.2 hypothetical protein compare
PS417_10840 -0.6 -1.2 amidase compare
PS417_14850 -0.6 -1.9 hypothetical protein compare
PS417_15475 -0.6 -1.3 IclR family transcriptional regulator compare
PS417_18710 -0.6 -2.6 hypothetical protein compare
PS417_16475 -0.6 -1.8 camphor resistance protein CrcB compare
PS417_07120 -0.6 -1.8 RNA polymerase sigma-H factor compare
PS417_08135 -0.6 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23775 -0.6 -0.6 exodeoxyribonuclease V subunit beta compare
PS417_05985 -0.6 -1.7 chemotaxis protein CheY compare
PS417_10530 -0.6 -2.3 LysR family transcriptional regulator compare
PS417_03465 -0.6 -0.7 type III secretion protein compare
PS417_18545 -0.6 -1.0 cell division protein compare
PS417_28070 -0.6 -3.1 phosphate ABC transporter ATP-binding protein compare
PS417_11825 -0.6 -1.2 transcriptional regulator compare
PS417_19705 -0.6 -1.3 flagellar biosynthesis regulator FlhF compare
PS417_14835 -0.6 -2.2 amidase compare
PS417_18250 -0.6 -1.1 chemotaxis protein compare
PS417_26345 -0.6 -2.8 choline dehydrogenase compare
PS417_03705 -0.6 -1.9 2-alkenal reductase compare
PS417_14505 -0.6 -1.8 glycogen debranching protein compare
PS417_07695 -0.6 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_28280 -0.6 -1.5 hypothetical protein compare
PS417_02510 -0.6 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_13255 -0.6 -1.3 ABC transporter compare
PS417_06685 -0.6 -0.5 beta-ketoadipyl CoA thiolase compare
PS417_09915 -0.6 -1.0 hypothetical protein compare
PS417_23820 -0.5 -1.7 hypothetical protein compare
PS417_06205 -0.5 -2.7 methionine aminopeptidase compare
PS417_24840 -0.5 -0.7 hypothetical protein compare
PS417_12525 -0.5 -2.0 hypothetical protein compare
PS417_23830 -0.5 -3.7 hypothetical protein compare
PS417_21695 -0.5 -1.1 succinylglutamate-semialdehyde dehydrogenase compare
PS417_06330 -0.5 -1.5 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_06150 -0.5 -1.9 SAM-dependent methlyltransferase compare
PS417_08105 -0.5 -3.8 N-ethylammeline chlorohydrolase compare
PS417_18090 -0.5 -2.7 iron ABC transporter compare


Specific Phenotypes

For 1 genes in this experiment

For solid stress 80% Methanol in Pseudomonas simiae WCS417

For solid stress 80% Methanol across organisms