Experiment set33S256 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_24935 -5.2 -2.3 hypothetical protein compare
PS417_23915 -4.3 -5.1 pantoate--beta-alanine ligase compare
PS417_28050 -3.4 -2.6 hypothetical protein compare
PS417_27795 -3.0 -1.3 orotate phosphoribosyltransferase compare
PS417_06680 -2.4 -5.2 nuclease PIN compare
PS417_06245 -2.4 -2.0 zinc metallopeptidase RseP compare
PS417_22570 -2.2 -1.4 H-NS histone compare
PS417_26990 -2.1 -1.3 RNA pyrophosphohydrolase compare
PS417_21480 -2.0 -1.8 23S rRNA pseudouridylate synthase compare
PS417_16490 -2.0 -1.7 cell division protein FtsK compare
PS417_22450 -2.0 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_26730 -2.0 -1.2 pyrroline-5-carboxylate reductase compare
PS417_21430 -1.9 -1.8 3-oxoacyl-ACP synthase compare
PS417_06375 -1.8 -0.8 deoxycytidine triphosphate deaminase compare
PS417_08125 -1.8 -0.8 prephenate dehydratase compare
PS417_03260 -1.8 -1.5 5S ribosomal RNA compare
PS417_23805 -1.8 -4.0 acetolactate synthase 3 regulatory subunit compare
PS417_23810 -1.7 -8.1 acetolactate synthase 3 catalytic subunit compare
PS417_09590 -1.7 -3.2 membrane protein compare
PS417_06945 -1.6 -1.2 membrane protein compare
PS417_08540 -1.5 -2.4 RNA helicase compare
PS417_02555 -1.5 -7.9 exoribonuclease R compare
PS417_10645 -1.5 -4.2 magnesium ABC transporter ATPase compare
PS417_02975 -1.4 -3.5 3-dehydroquinate dehydratase compare
PS417_26775 -1.4 -8.0 thiazole synthase compare
PS417_05560 -1.4 -2.4 ABC transporter compare
PS417_24600 -1.4 -5.9 hydrogenase compare
PS417_01920 -1.4 -1.1 ATP-dependent protease subunit HslV compare
PS417_09600 -1.4 -3.8 glycosyl transferase family 1 compare
PS417_04365 -1.4 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_05160 -1.3 -1.4 DNA polymerase III subunit chi compare
PS417_19350 -1.3 -3.4 GTP cyclohydrolase compare
PS417_20855 -1.3 -1.2 hypothetical protein compare
PS417_21625 -1.3 -1.2 DNA-binding protein compare
PS417_08130 -1.3 -2.0 aspartate aminotransferase compare
PS417_24605 -1.3 -3.3 thiamine-phosphate pyrophosphorylase compare
PS417_02880 -1.2 -1.6 copper chaperone compare
PS417_09470 -1.2 -1.4 hypothetical protein compare
PS417_27425 -1.2 -4.5 exopolyphosphatase compare
PS417_09595 -1.2 -3.9 membrane protein compare
PS417_22445 -1.2 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_27585 -1.2 -1.3 diaminopimelate epimerase compare
PS417_04380 -1.2 -1.0 ABC transporter permease compare
PS417_04305 -1.1 -1.6 aspartate ammonia-lyase compare
PS417_09615 -1.1 -3.5 glycosyl transferase family 1 compare
PS417_02255 -1.1 -2.3 lipopolysaccharide kinase compare
PS417_19800 -1.1 -2.9 flagellar motor switch protein FliG compare
PS417_07565 -1.1 -1.8 hypothetical protein compare
PS417_23545 -1.1 -1.6 gamma-glutamyl kinase compare
PS417_15875 -1.1 -1.4 LuxR family transcriptional regulator compare
PS417_11705 -1.1 -4.1 cyclic peptide transporter compare
PS417_24500 -1.0 -2.0 DEAD/DEAH box helicase compare
PS417_19755 -1.0 -1.9 flagellar motor switch protein FliM compare
PS417_02485 -1.0 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_07640 -1.0 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05975 -1.0 -0.8 chemotaxis protein CheW compare
PS417_09585 -1.0 -5.4 acetyltransferase compare
PS417_27195 -1.0 -1.0 N-acetylglutamate synthase compare
PS417_28080 -1.0 -6.2 phosphate ABC transporter permease compare
PS417_00705 -1.0 -1.3 MarR family transcriptional regulator compare
PS417_04390 -1.0 -1.8 toluene tolerance protein compare
PS417_05100 -1.0 -1.9 RNA polymerase sigma factor compare
PS417_06145 -0.9 -1.1 hypothetical protein compare
PS417_26805 -0.9 -1.1 cell division protein FtsE compare
PS417_08410 -0.9 -1.7 hypothetical protein compare
PS417_17240 -0.9 -1.4 trigger factor compare
PS417_28070 -0.9 -4.1 phosphate ABC transporter ATP-binding protein compare
PS417_21655 -0.9 -1.1 aspartate kinase compare
PS417_08580 -0.9 -3.0 histidine kinase compare
PS417_20825 -0.9 -1.9 drug:proton antiporter compare
PS417_14805 -0.9 -2.0 AraC family transcriptional regulator compare
PS417_27300 -0.9 -0.8 cell division protein ZapA compare
PS417_01435 -0.9 -1.3 hypothetical protein compare
PS417_00380 -0.9 -1.7 zinc ABC transporter ATP-binding protein compare
PS417_11535 -0.9 -2.1 nicotinate phosphoribosyltransferase compare
PS417_19850 -0.9 -5.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_22840 -0.9 -1.4 tRNA-Met compare
PS417_16640 -0.9 -3.0 toxin compare
PS417_08170 -0.9 -5.0 capsular biosynthesis protein compare
PS417_03830 -0.9 -4.2 protein disaggregation chaperone compare
PS417_07470 -0.9 -0.8 hypothetical protein compare
PS417_07615 -0.9 -3.3 TetR family transcriptional regulator compare
PS417_26175 -0.8 -0.8 sarcosine oxidase subunit gamma compare
PS417_04385 -0.8 -1.3 organic solvent ABC transporter substrate-binding protein compare
PS417_19675 -0.8 -2.2 chemotaxis protein CheY compare
PS417_27870 -0.8 -1.5 ATP-dependent DNA helicase RecG compare
PS417_02270 -0.8 -1.7 carbamoyltransferase compare
PS417_15505 -0.8 -2.1 glutaminase compare
PS417_09235 -0.8 -0.9 molecular chaperone compare
PS417_12390 -0.8 -1.8 hypothetical protein compare
PS417_13490 -0.8 -1.7 hypothetical protein compare
PS417_05695 -0.8 -2.0 transcriptional regulator compare
PS417_28515 -0.8 -2.2 16S rRNA methyltransferase compare
PS417_02395 -0.8 -1.9 DNA topoisomerase IV subunit B compare
PS417_09625 -0.8 -2.2 sugar ABC transporter substrate-binding protein compare
PS417_16885 -0.8 -1.9 hypothetical protein compare
PS417_19520 -0.8 -2.2 transcriptional regulator compare
PS417_08990 -0.7 -2.2 ABC transporter substrate-binding protein compare
PS417_18020 -0.7 -1.3 hypothetical protein compare
PS417_17780 -0.7 -1.1 Ais protein compare
PS417_01620 -0.7 -1.1 preprotein translocase subunit SecB compare
PS417_09830 -0.7 -2.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_19840 -0.7 -5.5 flagellar cap protein FliD compare
PS417_04650 -0.7 -0.4 D-alanine--D-alanine ligase compare
PS417_21090 -0.7 -1.0 hypothetical protein compare
PS417_14710 -0.7 -1.2 isochorismatase compare
PS417_25030 -0.7 -1.9 hypothetical protein compare
PS417_21120 -0.7 -2.1 phosphoserine phosphatase compare
PS417_14065 -0.7 -3.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19425 -0.7 -0.8 allantoicase compare
PS417_21830 -0.7 -3.0 TetR family transcriptional regulator compare
PS417_01575 -0.7 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23375 -0.7 -1.1 cytochrome C oxidase compare
PS417_13165 -0.7 -0.7 peroxidase compare
PS417_19735 -0.7 -3.2 flagellar biosynthesis protein FliQ compare
PS417_16495 -0.7 -2.0 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_23580 -0.7 -1.1 peptidylprolyl isomerase compare
PS417_06200 -0.7 -2.8 protein-PII uridylyltransferase compare
PS417_23900 -0.7 -3.6 poly(A) polymerase compare
PS417_07770 -0.7 -1.5 hypothetical protein compare
PS417_20635 -0.7 -0.8 ABC transporter ATP-binding protein compare
PS417_27705 -0.7 -1.1 amino acid dehydrogenase compare
PS417_21425 -0.7 -0.8 4-amino-4-deoxychorismate lyase compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_21595 -0.7 -3.5 flagellar biosynthesis protein FlgN compare
PS417_03460 -0.7 -2.5 type III secretion protein HrpI compare
PS417_10920 -0.7 -1.9 LysR family transcriptional regulator compare
PS417_20985 -0.7 -0.4 porin compare
PS417_26640 -0.7 -2.6 hypothetical protein compare
PS417_23095 -0.6 -0.9 exodeoxyribonuclease compare
PS417_15470 -0.6 -2.3 saccharopine dehydrogenase compare
PS417_26420 -0.6 -0.9 hypothetical protein compare
PS417_16520 -0.6 -1.2 cold-shock protein compare
PS417_01425 -0.6 -2.0 AraC family transcriptional regulator compare
PS417_18205 -0.6 -1.1 aldehyde dehydrogenase compare
PS417_15120 -0.6 -2.3 chromosome segregation protein SMC compare
PS417_27595 -0.6 -1.2 recombinase XerC compare
PS417_22260 -0.6 -2.2 segregation and condensation protein B compare
PS417_17755 -0.6 -1.9 hypothetical protein compare
PS417_05815 -0.6 -1.5 recombinase RecA compare
PS417_02885 -0.6 -1.4 hypothetical protein compare
PS417_21105 -0.6 -3.3 aminodeoxychorismate synthase compare
PS417_19665 -0.6 -1.8 flagellar motor protein MotD compare
PS417_04530 -0.6 -1.6 glycerate dehydrogenase compare
PS417_15200 -0.6 -1.7 protein activator of alkane oxidation PraB compare
PS417_00845 -0.6 -0.7 transcriptional regulator compare
PS417_11060 -0.6 -1.4 transporter compare
PS417_14985 -0.6 -2.3 Fe-S protein compare
PS417_22530 -0.6 -3.8 hypothetical protein compare
PS417_18395 -0.6 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_20915 -0.6 -1.4 hypothetical protein compare
PS417_02210 -0.6 -2.7 diguanylate cyclase compare
PS417_22060 -0.6 -0.9 hypothetical protein compare
PS417_19860 -0.6 -5.0 flagellar hook protein FlgL compare
PS417_13075 -0.6 -0.5 hypothetical protein compare
PS417_23845 -0.6 -1.7 hemin ABC transporter ATP-binding protein compare
PS417_04310 -0.6 -1.8 hypothetical protein compare
PS417_02950 -0.6 -1.8 tRNA-dihydrouridine synthase B compare
PS417_19650 -0.6 -2.1 chemotaxis protein CheW compare
PS417_21850 -0.6 -0.8 LysR family transcriptional regulator compare
PS417_03560 -0.6 -0.7 GTP-binding protein compare
PS417_23910 -0.6 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_04270 -0.6 -3.7 ribonuclease G compare
PS417_20415 -0.6 -1.7 reverse transcriptase compare
PS417_00995 -0.6 -1.1 alpha/beta hydrolase compare
PS417_07890 -0.6 -1.4 hypothetical protein compare
PS417_19730 -0.6 -2.6 flagellar biosynthesis protein FliR compare
PS417_22330 -0.6 -1.1 arginine deiminase compare
PS417_07900 -0.6 -3.3 hypothetical protein compare
PS417_25055 -0.6 -1.8 transposase compare
PS417_06365 -0.6 -2.5 RNA polymerase sigma factor compare
PS417_25175 -0.6 -1.3 hypothetical protein compare
PS417_03705 -0.6 -1.5 2-alkenal reductase compare
PS417_20775 -0.6 -1.8 coproporphyrinogen III oxidase compare
PS417_19790 -0.6 -2.2 ATP synthase compare
PS417_22895 -0.6 -3.6 tyrosine recombinase XerD compare
PS417_16560 -0.6 -1.1 GNAT family acetyltransferase compare
PS417_07700 -0.5 -1.3 chromosome partitioning protein ParA compare
PS417_00830 -0.5 -2.5 hypothetical protein compare
PS417_23380 -0.5 -1.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_07740 -0.5 -2.2 tRNA-dihydrouridine synthase A compare
PS417_13730 -0.5 -1.5 hypothetical protein compare
PS417_18400 -0.5 -1.7 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_21780 -0.5 -1.7 argininosuccinate lyase compare
PS417_27690 -0.5 -1.5 XRE family transcriptional regulator compare
PS417_05710 -0.5 -1.4 hypothetical protein compare
PS417_14260 -0.5 -1.4 phosphate ABC transporter permease compare
PS417_00835 -0.5 -2.4 hypothetical protein compare
PS417_01750 -0.5 -1.7 histidine ammonia-lyase compare
PS417_18090 -0.5 -1.6 iron ABC transporter compare
PS417_14140 -0.5 -1.2 membrane protein compare
PS417_12015 -0.5 -1.7 phosphoglycerate mutase compare
PS417_07850 -0.5 -2.2 hypothetical protein compare
PS417_21630 -0.5 -0.9 magnesium transporter compare
PS417_10435 -0.5 -1.1 serine/threonine protein kinase compare
PS417_04010 -0.5 -1.7 glycine/betaine ABC transporter ATP-binding protein compare
PS417_19935 -0.5 -1.4 hypothetical protein compare
PS417_03000 -0.5 -1.8 translation initiation factor Sui1 compare
PS417_21065 -0.5 -1.3 3-methylitaconate isomerase compare
PS417_23625 -0.5 -1.2 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress 80% Methanol across organisms