Experiment set33S256 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 0.5 mM; solid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_08230 +1.7 2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_16370 +1.5 12.0 chemotaxis protein CheY compare
PS417_10720 +1.4 7.1 chemotaxis protein CheY compare
PS417_19560 +1.1 8.0 amino acid ABC transporter substrate-binding protein compare
PS417_19600 +1.0 1.9 exonuclease compare
PS417_24885 +1.0 2.9 transcriptional regulator compare
PS417_28265 +1.0 1.4 pyridoxamine kinase compare
PS417_19825 +1.0 9.0 ATPase AAA compare
PS417_24370 +0.9 1.4 (2Fe-2S)-binding protein compare
PS417_08155 +0.9 1.5 integration host factor subunit beta compare
PS417_20340 +0.9 1.8 hypothetical protein compare
PS417_08220 +0.9 1.4 epimerase compare
PS417_00195 +0.9 2.2 hypothetical protein compare
PS417_26850 +0.9 1.3 twin-arginine translocation pathway signal protein compare
PS417_17930 +0.8 3.2 aldehyde dehydrogenase compare
PS417_00370 +0.8 1.3 hypothetical protein compare
PS417_20785 +0.8 2.1 transcriptional regulator compare
PS417_22580 +0.8 2.5 membrane protein compare
PS417_08090 +0.8 0.8 3-oxoacyl-ACP reductase compare
PS417_19555 +0.8 4.1 RNA polymerase sigma70 compare
PS417_06395 +0.7 2.1 amino acid transporter compare
PS417_24135 +0.7 1.7 hypothetical protein compare
PS417_07305 +0.7 2.1 3-beta hydroxysteroid dehydrogenase compare
PS417_02365 +0.7 2.2 hypothetical protein compare
PS417_18130 +0.7 3.2 ABC transporter substrate-binding protein compare
PS417_01965 +0.7 1.7 fimbriae biosynthesis protein compare
PS417_27035 +0.7 2.4 FAD-linked oxidase compare
PS417_15065 +0.7 1.6 GntR family transcriptional regulator compare
PS417_08025 +0.7 0.7 acetylornithine aminotransferase compare
PS417_28275 +0.7 2.0 cobalamin biosynthesis protein CobW compare
PS417_26605 +0.6 0.7 malonate decarboxylase subunit beta compare
PS417_22015 +0.6 1.5 hypothetical protein compare
PS417_11175 +0.6 0.9 AraC family transcriptional regulator compare
PS417_21695 +0.6 2.2 succinylglutamate-semialdehyde dehydrogenase compare
PS417_23360 +0.6 1.1 hypothetical protein compare
PS417_22955 +0.6 3.2 Fe-S protein compare
PS417_10880 +0.6 2.8 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_28225 +0.6 1.4 hypothetical protein compare
PS417_14540 +0.6 1.5 cytochrome C oxidase subunit III compare
PS417_25145 +0.6 1.0 hypothetical protein compare
PS417_13185 +0.6 2.0 RND transporter compare
PS417_21015 +0.6 1.3 EstX protein compare
PS417_17035 +0.6 1.2 Cro/Cl family transcriptional regulator compare
PS417_27005 +0.6 1.0 membrane protein compare
PS417_14050 +0.6 2.3 recombinase compare
PS417_05010 +0.6 1.1 IclR family transcriptional regulator compare
PS417_21140 +0.6 1.9 LysR family transcriptional regulator compare
PS417_18990 +0.6 1.6 membrane protein compare
PS417_04700 +0.5 3.1 RND transporter MFP subunit compare
PS417_03100 +0.5 0.9 pilus assembly protein compare
PS417_05535 +0.5 1.0 Fis family transcriptional regulator compare
PS417_21990 +0.5 1.5 LacI family transcriptional regulator compare
PS417_26260 +0.5 1.4 hypothetical protein compare
PS417_03630 +0.5 2.9 hypothetical protein compare
PS417_02895 +0.5 0.8 precorrin-6Y C5,15-methyltransferase compare
PS417_06635 +0.5 0.9 ferredoxin compare
PS417_19500 +0.5 2.1 antibiotic synthesis protein MbtH compare
PS417_22270 +0.5 2.0 hypothetical protein compare
PS417_00260 +0.5 2.3 gluconate 2-dehydrogenase compare
PS417_22945 +0.5 0.8 phosphoribosylglycinamide formyltransferase compare
PS417_04960 +0.5 1.5 hypothetical protein compare
PS417_22375 +0.5 0.8 cold-shock protein compare
PS417_07560 +0.5 0.7 universal stress protein UspA compare
PS417_21270 +0.5 1.3 translation initiation factor 2 compare
PS417_11445 +0.5 2.8 enoyl-CoA hydratase compare
PS417_11865 +0.5 1.0 xylose isomerase compare
PS417_11000 +0.5 1.6 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_08045 +0.5 1.5 uracil permease compare
PS417_05370 +0.5 2.0 PadR family transcriptional regulator compare
PS417_03155 +0.5 1.8 transcriptional regulator compare
PS417_10130 +0.5 2.6 hypothetical protein compare
PS417_10305 +0.5 1.5 hypothetical protein compare
PS417_09300 +0.5 1.8 peptidylprolyl isomerase compare
PS417_16015 +0.5 1.9 aldolase compare
PS417_13660 +0.5 1.9 AsnC family transcriptional regulator compare
PS417_26900 +0.5 0.9 L-cystine transporter tcyP compare
PS417_25225 +0.5 1.0 MFS transporter compare
PS417_19125 +0.5 1.2 LysR family transcriptional regulator compare
PS417_24355 +0.5 0.8 MFS transporter compare
PS417_13940 +0.5 1.6 racemase compare
PS417_15390 +0.5 1.8 hypothetical protein compare
PS417_27075 +0.5 1.4 thiol-disulfide isomerase compare
PS417_13645 +0.5 1.5 ABC transporter compare
PS417_20125 +0.5 1.4 phosphoribosylglycinamide formyltransferase compare
PS417_17215 +0.5 0.9 peptidylprolyl isomerase compare
PS417_01015 +0.5 1.7 polar amino acid ABC transporter permease compare
PS417_00495 +0.5 2.0 ABC transporter permease compare
PS417_02680 +0.5 1.8 hypothetical protein compare
PS417_11570 +0.5 1.5 ABC transporter permease compare
PS417_24115 +0.5 0.9 hypothetical protein compare
PS417_15895 +0.5 2.0 iron dicitrate transport regulator FecR compare
PS417_22980 +0.5 1.9 GntR family transcriptional regulator compare
PS417_04690 +0.5 1.4 transcriptional regulator compare
PS417_16680 +0.5 2.0 MFS transporter compare
PS417_00510 +0.5 0.6 membrane protein compare
PS417_18265 +0.5 1.7 AsnC family transcriptional regulator compare
PS417_06970 +0.5 1.2 LysR family transcriptional regulator compare
PS417_00990 +0.5 2.1 LysR family transcriptional regulator compare
PS417_04585 +0.5 0.6 hypothetical protein compare
PS417_12275 +0.5 2.5 2,4-dienoyl-CoA reductase compare
PS417_01715 +0.5 0.6 hypothetical protein compare
PS417_26590 +0.5 2.9 malonate decarboxylase subunit epsilon compare
PS417_00455 +0.5 1.0 hypothetical protein compare
PS417_07020 +0.5 1.6 chemotaxis protein compare
PS417_10810 +0.5 0.9 hypothetical protein compare
PS417_24800 +0.4 1.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_21535 +0.4 1.8 chemotaxis protein CheY compare
PS417_19620 +0.4 1.3 hypothetical protein compare
PS417_09140 +0.4 1.8 biopolymer transporter ExbB compare
PS417_06465 +0.4 1.3 transcriptional regulator compare
PS417_07245 +0.4 1.6 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_02705 +0.4 0.8 urease accessory protein UreF compare
PS417_14755 +0.4 1.2 UV damage repair endonuclease UvdE compare
PS417_20240 +0.4 2.3 hypothetical protein compare
PS417_26285 +0.4 1.8 3-hydroxybutyryl-CoA dehydrogenase compare
PS417_05095 +0.4 1.7 membrane protein compare
PS417_13455 +0.4 1.6 alkaline proteinase inhibitor compare
PS417_08515 +0.4 1.6 hypothetical protein compare
PS417_03905 +0.4 1.2 fimbrial protein compare
PS417_25905 +0.4 1.8 AsnC family transcriptional regulator compare
PS417_01380 +0.4 1.8 nucleotide cyclase compare
PS417_16775 +0.4 1.8 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_15225 +0.4 1.4 alpha/beta hydrolase compare
PS417_26060 +0.4 0.7 DNA polymerase III subunit epsilon compare
PS417_09415 +0.4 2.4 3-isopropylmalate dehydratase compare
PS417_14165 +0.4 1.6 ArsR family transcriptional regulator compare
PS417_11450 +0.4 2.4 AraC family transcriptional regulator compare
PS417_28320 +0.4 1.8 metal ABC transporter substrate-binding protein compare
PS417_18940 +0.4 1.9 LysR family transcriptional regulator compare
PS417_15030 +0.4 0.9 short-chain dehydrogenase compare
PS417_21220 +0.4 2.1 acetyl-CoA acetyltransferase compare
PS417_28305 +0.4 2.2 GTP cyclohydrolase compare
PS417_24520 +0.4 1.8 DNA polymerase III subunit epsilon compare
PS417_24225 +0.4 1.4 hypothetical protein compare
PS417_02745 +0.4 1.2 FMN-dependent NADH-azoreductase compare
PS417_13065 +0.4 1.2 UDP pyrophosphate phosphatase compare
PS417_17885 +0.4 2.1 moaF compare
PS417_03780 +0.4 1.6 general secretion pathway protein GspH compare
PS417_15675 +0.4 1.7 chemotaxis protein compare
PS417_19355 +0.4 1.7 glutaredoxin compare
PS417_12565 +0.4 1.0 2-dehydro-3-deoxygluconokinase compare
PS417_16770 +0.4 1.7 pyridine nucleotide-disulfide oxidoreductase compare
PS417_16785 +0.4 1.3 ABC transporter permease compare
PS417_08150 +0.4 1.5 hypothetical protein compare
PS417_14810 +0.4 1.4 Fosmidomycin resistance protein compare
PS417_03025 +0.4 1.8 penicillin-binding protein 1C compare
PS417_14295 +0.4 1.3 AraC family transcriptional regulator compare
PS417_13640 +0.4 0.8 ribose ABC transporter permease compare
PS417_23210 +0.4 1.1 serine acetyltransferase compare
PS417_22030 +0.4 2.7 glutathione S-transferase compare
PS417_13945 +0.4 1.6 GNAT family acetyltransferase compare
PS417_13245 +0.4 1.2 saccharopine dehydrogenase compare
PS417_06095 +0.4 0.6 energy transducer TonB compare
PS417_21380 +0.4 1.6 GntR family transcriptional regulator compare
PS417_19950 +0.4 2.2 ATP-dependent DNA helicase RecQ compare
PS417_19830 +0.4 2.1 flagellar assembly protein FliT compare
PS417_22770 +0.4 1.7 SAM-dependent methyltransferase compare
PS417_03080 +0.4 1.0 hypothetical protein compare
PS417_23005 +0.4 1.4 XRE family transcriptional regulator compare
PS417_00940 +0.4 1.7 sulfate ABC transporter permease compare
PS417_01800 +0.4 2.4 amino acid ABC transporter substrate-binding protein compare
PS417_22305 +0.4 1.7 histidine kinase compare
PS417_23890 +0.4 1.8 ATPase compare
PS417_06805 +0.4 2.1 glycerol acyltransferase compare
PS417_13850 +0.4 1.4 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_10120 +0.4 1.7 hypothetical protein compare
PS417_09030 +0.4 2.4 alpha/beta hydrolase compare
PS417_18590 +0.4 1.5 SAM-dependent methyltransferase compare
PS417_12755 +0.4 1.4 RND transporter compare
PS417_19365 +0.4 2.4 ABC transporter substrate-binding protein compare
PS417_23150 +0.4 1.0 Cro/Cl family transcriptional regulator compare
PS417_16180 +0.4 1.2 MFS transporter compare
PS417_10575 +0.4 1.6 DNA alkylation repair protein compare
PS417_26305 +0.4 1.3 AraC family transcriptional regulator compare
PS417_22630 +0.4 1.0 hypothetical protein compare
PS417_03915 +0.4 1.9 tRNA-Thr compare
PS417_05615 +0.4 2.0 (2Fe-2S)-binding protein compare
PS417_12780 +0.4 1.5 (Fe-S)-binding protein compare
PS417_11080 +0.4 1.6 dehydrogenase compare
PS417_26835 +0.4 1.0 3-mercaptopyruvate sulfurtransferase compare
PS417_09770 +0.4 2.3 MFS transporter compare
PS417_00115 +0.4 2.3 quinone oxidoreductase compare
PS417_01405 +0.4 1.0 sugar transporter compare
PS417_28180 +0.4 1.6 GNAT family acetyltransferase compare
PS417_28405 +0.4 1.3 hypothetical protein compare
PS417_00310 +0.4 1.7 cysteine synthase compare
PS417_13195 +0.4 1.7 RND transporter MFP subunit compare
PS417_17675 +0.4 1.0 ABC transporter compare
PS417_19195 +0.4 1.3 hypothetical protein compare
PS417_26630 +0.4 2.2 transcriptional regulator compare
PS417_14780 +0.4 1.6 GNAT family acetyltraansferase compare
PS417_10345 +0.4 1.4 MFS transporter compare
PS417_04180 +0.4 1.2 GntR family transcriptional regulator compare
PS417_08590 +0.4 1.2 hypothetical protein compare
PS417_08825 +0.4 1.2 TetR family transcriptional regulator compare
PS417_17125 +0.4 1.2 transcriptional regulator compare
PS417_23315 +0.4 0.7 transcriptional regulator compare
PS417_11950 +0.4 0.8 hypothetical protein compare
PS417_12710 +0.4 1.5 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) compare
PS417_20520 +0.4 0.9 3-phosphoglycerate kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress 80% Methanol across organisms