Experiment set33S255 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -5.5 -3.8 LysR family transcriptional regulator compare
PS417_24935 -4.7 -2.0 hypothetical protein compare
PS417_00650 -4.4 -1.9 LysR family transcriptional regulator compare
PS417_28050 -4.3 -4.6 hypothetical protein compare
PS417_02280 -3.5 -2.4 GlcNAc-PI de-N-acetylase compare
PS417_05975 -3.3 -1.4 chemotaxis protein CheW compare
PS417_23915 -3.3 -4.5 pantoate--beta-alanine ligase compare
PS417_24605 -3.2 -4.1 thiamine-phosphate pyrophosphorylase compare
PS417_00660 -2.7 -3.5 DSBA oxidoreductase compare
PS417_03560 -2.6 -1.8 GTP-binding protein compare
PS417_22450 -2.5 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_04305 -2.4 -2.1 aspartate ammonia-lyase compare
PS417_00345 -2.2 -2.6 copper-binding protein compare
PS417_24705 -2.2 -3.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_21430 -2.2 -1.5 3-oxoacyl-ACP synthase compare
PS417_23380 -2.1 -2.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_00655 -2.1 -6.6 DSBA oxidoreductase compare
PS417_22520 -2.1 -1.4 histidine kinase compare
PS417_20855 -2.0 -1.3 hypothetical protein compare
PS417_00920 -2.0 -4.4 diguanylate cyclase compare
PS417_04365 -1.9 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04390 -1.9 -3.1 toluene tolerance protein compare
PS417_26900 -1.9 -1.7 L-cystine transporter tcyP compare
PS417_04500 -1.8 -1.6 hypothetical protein compare
PS417_01580 -1.8 -1.9 imidazole glycerol phosphate synthase compare
PS417_26775 -1.8 -8.2 thiazole synthase compare
PS417_01605 -1.8 -1.2 phosphoglycerate mutase compare
PS417_23950 -1.8 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_07455 -1.7 -1.8 glutamine amidotransferase compare
PS417_00665 -1.7 -7.0 RND transporter compare
PS417_18545 -1.7 -3.1 cell division protein compare
PS417_06680 -1.7 -3.3 nuclease PIN compare
PS417_04585 -1.7 -1.7 hypothetical protein compare
PS417_02720 -1.7 -1.3 TetR family transcriptional regulator compare
PS417_26990 -1.7 -1.0 RNA pyrophosphohydrolase compare
PS417_27870 -1.7 -2.0 ATP-dependent DNA helicase RecG compare
PS417_07615 -1.6 -4.7 TetR family transcriptional regulator compare
PS417_08025 -1.6 -1.6 acetylornithine aminotransferase compare
PS417_21630 -1.6 -1.5 magnesium transporter compare
PS417_00900 -1.6 -2.4 4-aminobutyrate aminotransferase compare
PS417_06775 -1.6 -5.4 antibiotic transporter compare
PS417_21425 -1.6 -2.2 4-amino-4-deoxychorismate lyase compare
PS417_22935 -1.5 -2.3 hypothetical protein compare
PS417_18310 -1.5 -1.0 hypothetical protein compare
PS417_10645 -1.5 -4.7 magnesium ABC transporter ATPase compare
PS417_19995 -1.5 -8.0 Long-chain fatty acid transport protein compare
PS417_08410 -1.5 -1.1 hypothetical protein compare
PS417_27605 -1.5 -4.2 hypothetical protein compare
PS417_13620 -1.4 -1.5 thermostable hemolysin compare
PS417_24600 -1.4 -5.5 hydrogenase compare
PS417_23375 -1.4 -1.9 cytochrome C oxidase compare
PS417_27835 -1.4 -5.5 endoribonuclease compare
PS417_05445 -1.4 -1.6 DNA mismatch repair protein MutT compare
PS417_01560 -1.4 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_22530 -1.4 -3.1 hypothetical protein compare
PS417_26335 -1.4 -1.8 BetI family transcriptional regulator compare
PS417_05595 -1.4 -6.7 ornithine carbamoyltransferase compare
PS417_27245 -1.4 -1.3 aminotransferase DegT compare
PS417_15095 -1.3 -1.5 hypothetical protein compare
PS417_06770 -1.3 -4.7 multidrug transporter compare
PS417_26985 -1.3 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27135 -1.3 -0.8 glutamine synthetase compare
PS417_23385 -1.3 -4.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_08125 -1.3 -0.5 prephenate dehydratase compare
PS417_28070 -1.3 -5.7 phosphate ABC transporter ATP-binding protein compare
PS417_19350 -1.3 -3.5 GTP cyclohydrolase compare
PS417_06375 -1.3 -0.5 deoxycytidine triphosphate deaminase compare
PS417_06145 -1.3 -1.2 hypothetical protein compare
PS417_01145 -1.3 -1.1 taurine transporter ATP-binding subunit compare
PS417_04380 -1.3 -0.8 ABC transporter permease compare
PS417_14045 -1.3 -4.0 alkyl hydroperoxide reductase compare
PS417_15885 -1.3 -1.9 GCN5 family acetyltransferase compare
PS417_01565 -1.2 -3.3 imidazole glycerol phosphate synthase compare
PS417_08685 -1.2 -1.5 flagellar hook-length control protein FliK compare
PS417_02975 -1.2 -2.7 3-dehydroquinate dehydratase compare
PS417_03995 -1.2 -3.4 Fe(II)-dependent oxygenase compare
PS417_19645 -1.2 -1.6 chemotaxis protein compare
PS417_00370 -1.2 -1.0 hypothetical protein compare
PS417_06365 -1.2 -5.7 RNA polymerase sigma factor compare
PS417_01575 -1.2 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -1.2 -1.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_04595 -1.2 -1.6 cell division protein MraZ compare
PS417_08990 -1.1 -3.3 ABC transporter substrate-binding protein compare
PS417_02555 -1.1 -6.5 exoribonuclease R compare
PS417_07470 -1.1 -1.2 hypothetical protein compare
PS417_21355 -1.1 -1.8 hypothetical protein compare
PS417_24710 -1.1 -5.2 lipoprotein compare
PS417_20725 -1.1 -1.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_22895 -1.1 -3.2 tyrosine recombinase XerD compare
PS417_23390 -1.1 -4.5 ubiquinol oxidase subunit II compare
PS417_04420 -1.1 -3.3 histidinol dehydrogenase compare
PS417_19095 -1.1 -1.4 hypothetical protein compare
PS417_22575 -1.0 -4.9 exonuclease I compare
PS417_08170 -1.0 -6.4 capsular biosynthesis protein compare
PS417_02950 -1.0 -2.4 tRNA-dihydrouridine synthase B compare
PS417_01955 -1.0 -4.9 peptidase compare
PS417_17755 -1.0 -1.8 hypothetical protein compare
PS417_04220 -1.0 -1.1 4-carboxymuconolactone decarboxylase compare
PS417_05365 -1.0 -1.2 FAD-binding protein compare
PS417_12005 -1.0 -2.5 hypothetical protein compare
PS417_10330 -1.0 -2.6 histidine kinase compare
PS417_00475 -1.0 -3.7 membrane protein compare
PS417_13075 -1.0 -1.0 hypothetical protein compare
PS417_08365 -1.0 -0.9 hypothetical protein compare
PS417_13755 -1.0 -1.1 oxidoreductase compare
PS417_07575 -1.0 -3.1 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_13730 -0.9 -1.3 hypothetical protein compare
PS417_13510 -0.9 -0.9 polyketide cyclase compare
PS417_08540 -0.9 -1.6 RNA helicase compare
PS417_22870 -0.9 -1.8 lipoprotein compare
PS417_22735 -0.9 -5.2 thiol oxidoreductase compare
PS417_25765 -0.9 -1.4 transcriptional regulator compare
PS417_28085 -0.9 -6.1 phosphate-binding protein compare
PS417_28510 -0.9 -3.9 chromosome partitioning protein compare
PS417_14455 -0.9 -2.3 polyketide cyclase compare
PS417_05130 -0.9 -2.5 glutaredoxin compare
PS417_28265 -0.9 -2.2 pyridoxamine kinase compare
PS417_09590 -0.9 -1.9 membrane protein compare
PS417_05985 -0.9 -1.4 chemotaxis protein CheY compare
PS417_10910 -0.9 -2.1 FAD-dependent oxidoreductase compare
PS417_27110 -0.9 -2.5 spermidine/putrescine ABC transporter permease compare
PS417_06675 -0.9 -1.4 ATP-dependent helicase compare
PS417_13165 -0.9 -1.3 peroxidase compare
PS417_22195 -0.9 -3.5 peptidase compare
PS417_27155 -0.9 -1.3 aliphatic sulfonates transport ATP-binding subunit compare
PS417_26530 -0.9 -1.1 hypothetical protein compare
PS417_27610 -0.9 -3.9 hypothetical protein compare
PS417_03495 -0.9 -1.8 type III secretory protein EscS compare
PS417_26635 -0.9 -2.1 hypothetical protein compare
PS417_04270 -0.9 -3.8 ribonuclease G compare
PS417_09440 -0.9 -1.2 MerR family transcriptional regulator compare
PS417_06895 -0.9 -2.0 DNA-binding protein compare
PS417_10720 -0.9 -2.4 chemotaxis protein CheY compare
PS417_02045 -0.9 -1.9 3-oxoacyl-ACP synthase compare
PS417_04475 -0.9 -2.2 hypothetical protein compare
PS417_09595 -0.8 -3.0 membrane protein compare
PS417_27490 -0.8 -1.6 hypothetical protein compare
PS417_15200 -0.8 -2.3 protein activator of alkane oxidation PraB compare
PS417_17155 -0.8 -2.0 cytochrome B561 compare
PS417_12310 -0.8 -3.4 methionine synthase compare
PS417_18540 -0.8 -1.9 colicin V production CvpA compare
PS417_06730 -0.8 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_15085 -0.8 -2.1 ATPase AAA compare
PS417_10060 -0.8 -1.7 hypothetical protein compare
PS417_02880 -0.8 -1.0 copper chaperone compare
PS417_28080 -0.8 -5.9 phosphate ABC transporter permease compare
PS417_07120 -0.8 -3.1 RNA polymerase sigma-H factor compare
PS417_19415 -0.8 -2.2 allantoinase compare
PS417_27360 -0.8 -2.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_23820 -0.8 -3.0 hypothetical protein compare
PS417_02255 -0.8 -1.2 lipopolysaccharide kinase compare
PS417_11060 -0.8 -1.6 transporter compare
PS417_10025 -0.8 -1.2 bacteriophage lambda NinG family protein compare
PS417_14070 -0.8 -1.6 hypothetical protein compare
PS417_15975 -0.8 -1.6 glutamate carboxypeptidase compare
PS417_00455 -0.8 -1.1 hypothetical protein compare
PS417_12900 -0.8 -1.8 Fe-S protein compare
PS417_09420 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_02895 -0.8 -1.4 precorrin-6Y C5,15-methyltransferase compare
PS417_01620 -0.8 -1.5 preprotein translocase subunit SecB compare
PS417_01600 -0.8 -3.6 peptidase M23 compare
PS417_04530 -0.7 -1.6 glycerate dehydrogenase compare
PS417_26605 -0.7 -0.8 malonate decarboxylase subunit beta compare
PS417_21855 -0.7 -2.3 hypothetical protein compare
PS417_01185 -0.7 -3.8 ribosomal protein S6 modification protein compare
PS417_02395 -0.7 -2.9 DNA topoisomerase IV subunit B compare
PS417_27040 -0.7 -1.4 3-phosphoglycerate dehydrogenase compare
PS417_03990 -0.7 -4.7 ligand-gated channel protein compare
PS417_05525 -0.7 -2.3 Fis family transcriptional regulator compare
PS417_01285 -0.7 -1.1 haloacid dehalogenase compare
PS417_23545 -0.7 -0.9 gamma-glutamyl kinase compare
PS417_25720 -0.7 -3.6 anthranilate synthase component II compare
PS417_17190 -0.7 -2.7 MarR family transcriptional regulator compare
PS417_05470 -0.7 -2.4 DSBA oxidoreductase compare
PS417_02485 -0.7 -1.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08090 -0.7 -0.6 3-oxoacyl-ACP reductase compare
PS417_27105 -0.7 -1.8 spermidine/putrescine ABC transporter permease compare
PS417_11225 -0.7 -2.6 glyoxalase compare
PS417_04000 -0.7 -4.5 hypothetical protein compare
PS417_24775 -0.7 -1.6 dehydratase compare
PS417_14755 -0.7 -1.4 UV damage repair endonuclease UvdE compare
PS417_21480 -0.7 -0.8 23S rRNA pseudouridylate synthase compare
PS417_17980 -0.7 -1.7 ABC transporter permease compare
PS417_25320 -0.7 -4.0 dTDP-4-dehydrorhamnose reductase compare
PS417_16555 -0.7 -0.8 cupin compare
PS417_22350 -0.7 -1.4 Fis family transcriptional regulator compare
PS417_27305 -0.7 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_09630 -0.7 -2.6 glycosyl transferase compare
PS417_05590 -0.7 -3.4 iron ABC transporter ATP-binding protein compare
PS417_26995 -0.7 -3.4 phosphoserine phosphatase compare
PS417_22405 -0.7 -2.4 7-carboxy-7-deazaguanine synthase compare
PS417_18885 -0.7 -0.9 GntR family transcriptional regulator compare
PS417_19160 -0.7 -2.6 hypothetical protein compare
PS417_02270 -0.7 -1.7 carbamoyltransferase compare
PS417_24800 -0.7 -2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_20880 -0.7 -1.3 GntR family transcriptional regulator compare
PS417_11300 -0.7 -2.4 general secretion pathway protein GspE compare
PS417_05210 -0.7 -3.0 copper oxidase compare
PS417_09585 -0.7 -3.1 acetyltransferase compare
PS417_20875 -0.7 -2.2 chromosome segregation protein SMC compare


Specific Phenotypes

For 7 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms