Experiment set33S254 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23950 -4.7 -3.2 polynucleotide phosphorylase/polyadenylase compare
PS417_23915 -4.1 -5.5 pantoate--beta-alanine ligase compare
PS417_27795 -3.2 -1.4 orotate phosphoribosyltransferase compare
PS417_28050 -3.1 -2.3 hypothetical protein compare
PS417_23380 -2.8 -3.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_27865 -2.7 -4.8 LysR family transcriptional regulator compare
PS417_02805 -2.5 -2.9 urease subunit gamma compare
PS417_04365 -2.4 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26990 -2.3 -1.4 RNA pyrophosphohydrolase compare
PS417_26730 -2.1 -1.3 pyrroline-5-carboxylate reductase compare
PS417_02880 -2.0 -2.2 copper chaperone compare
PS417_27870 -1.9 -2.5 ATP-dependent DNA helicase RecG compare
PS417_08125 -1.8 -0.8 prephenate dehydratase compare
PS417_03260 -1.8 -1.6 5S ribosomal RNA compare
PS417_22565 -1.8 -0.8 formyltetrahydrofolate deformylase compare
PS417_06375 -1.8 -0.8 deoxycytidine triphosphate deaminase compare
PS417_06680 -1.8 -4.8 nuclease PIN compare
PS417_19350 -1.8 -4.9 GTP cyclohydrolase compare
PS417_06245 -1.7 -1.5 zinc metallopeptidase RseP compare
PS417_27195 -1.6 -1.7 N-acetylglutamate synthase compare
PS417_00650 -1.6 -1.4 LysR family transcriptional regulator compare
PS417_26775 -1.6 -7.5 thiazole synthase compare
PS417_10675 -1.6 -1.7 TetR family transcriptional regulator compare
PS417_00385 -1.5 -1.7 Fur family transcriptional regulator compare
PS417_06145 -1.5 -1.6 hypothetical protein compare
PS417_04390 -1.5 -2.7 toluene tolerance protein compare
PS417_19415 -1.5 -3.2 allantoinase compare
PS417_22450 -1.4 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_23545 -1.4 -1.6 gamma-glutamyl kinase compare
PS417_24605 -1.4 -1.9 thiamine-phosphate pyrophosphorylase compare
PS417_24935 -1.3 -1.4 hypothetical protein compare
PS417_08130 -1.3 -1.5 aspartate aminotransferase compare
PS417_24600 -1.3 -5.7 hydrogenase compare
PS417_06370 -1.3 -1.8 cold-shock protein compare
PS417_24710 -1.3 -6.5 lipoprotein compare
PS417_13510 -1.2 -1.3 polyketide cyclase compare
PS417_17795 -1.2 -1.9 ABC transporter permease compare
PS417_02555 -1.2 -7.2 exoribonuclease R compare
PS417_24800 -1.2 -5.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_22445 -1.2 -2.4 ATP-dependent DNA helicase RuvB compare
PS417_07710 -1.2 -2.2 membrane protein compare
PS417_00655 -1.2 -5.9 DSBA oxidoreductase compare
PS417_00660 -1.1 -3.0 DSBA oxidoreductase compare
PS417_07455 -1.1 -2.0 glutamine amidotransferase compare
PS417_00665 -1.1 -6.9 RND transporter compare
PS417_08135 -1.1 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_10645 -1.1 -3.4 magnesium ABC transporter ATPase compare
PS417_00180 -1.1 -2.0 tryptophan synthase subunit alpha compare
PS417_04385 -1.1 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_08410 -1.1 -1.7 hypothetical protein compare
PS417_02485 -1.1 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23370 -1.1 -3.4 protoheme IX farnesyltransferase compare
PS417_27715 -1.1 -3.5 Fe-S oxidoreductase compare
PS417_00920 -1.1 -4.8 diguanylate cyclase compare
PS417_19425 -1.1 -1.2 allantoicase compare
PS417_25155 -1.1 -1.7 hypothetical protein compare
PS417_21655 -1.0 -1.3 aspartate kinase compare
PS417_25710 -1.0 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_08540 -1.0 -2.0 RNA helicase compare
PS417_24990 -1.0 -2.8 exotoxin compare
PS417_24745 -1.0 -1.7 gamma-glutamyl phosphate reductase compare
PS417_01605 -1.0 -1.1 phosphoglycerate mutase compare
PS417_23385 -1.0 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_05140 -1.0 -2.0 dipicolinate synthase compare
PS417_28070 -1.0 -5.1 phosphate ABC transporter ATP-binding protein compare
PS417_05985 -1.0 -1.4 chemotaxis protein CheY compare
PS417_12870 -0.9 -0.7 enoyl-CoA hydratase compare
PS417_00510 -0.9 -0.8 membrane protein compare
PS417_20610 -0.9 -1.6 hypothetical protein compare
PS417_19720 -0.9 -1.6 DNA-binding protein compare
PS417_01560 -0.9 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_02280 -0.9 -1.2 GlcNAc-PI de-N-acetylase compare
PS417_00175 -0.9 -1.2 CigR compare
PS417_25765 -0.9 -2.0 transcriptional regulator compare
PS417_11925 -0.9 -2.2 hypothetical protein compare
PS417_28080 -0.9 -6.7 phosphate ABC transporter permease compare
PS417_17405 -0.8 -1.9 AraC family transcriptional regulator compare
PS417_19630 -0.8 -2.3 LuxR family transcriptional regulator compare
PS417_06200 -0.8 -3.7 protein-PII uridylyltransferase compare
PS417_09575 -0.8 -1.4 glutathione S-transferase compare
PS417_20775 -0.8 -2.1 coproporphyrinogen III oxidase compare
PS417_24430 -0.8 -1.5 3-dehydroquinate dehydratase compare
PS417_27300 -0.8 -0.8 cell division protein ZapA compare
PS417_04585 -0.8 -1.2 hypothetical protein compare
PS417_16555 -0.8 -1.1 cupin compare
PS417_11810 -0.8 -1.8 oxidoreductase compare
PS417_06770 -0.8 -3.4 multidrug transporter compare
PS417_28220 -0.8 -1.7 LysR family transcriptional regulator compare
PS417_23390 -0.8 -3.2 ubiquinol oxidase subunit II compare
PS417_16950 -0.8 -2.6 fimbrial protein compare
PS417_01855 -0.8 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_02255 -0.8 -1.6 lipopolysaccharide kinase compare
PS417_08580 -0.7 -3.1 histidine kinase compare
PS417_01565 -0.7 -2.9 imidazole glycerol phosphate synthase compare
PS417_27705 -0.7 -1.4 amino acid dehydrogenase compare
PS417_15465 -0.7 -2.2 carboxynorspermidine decarboxylase compare
PS417_01710 -0.7 -3.2 histidine utilization repressor compare
PS417_04170 -0.7 -2.7 stringent starvation protein A compare
PS417_20365 -0.7 -3.0 Cro/Cl family transcriptional regulator compare
PS417_15975 -0.7 -1.6 glutamate carboxypeptidase compare
PS417_03380 -0.7 -1.1 hypothetical protein compare
PS417_10480 -0.7 -0.9 glutathione S-transferase compare
PS417_22530 -0.7 -3.2 hypothetical protein compare
PS417_23405 -0.7 -2.3 transcriptional regulator compare
PS417_17645 -0.7 -1.5 RND transporter compare
PS417_03785 -0.7 -1.7 pilus assembly protein PilV compare
PS417_09830 -0.7 -2.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_02770 -0.7 -2.2 membrane protein compare
PS417_14590 -0.7 -1.4 LysR family transcriptional regulator compare
PS417_18930 -0.7 -1.4 restriction endonuclease subunit S compare
PS417_05820 -0.7 -1.5 recombinase RecX compare
PS417_01955 -0.7 -3.9 peptidase compare
PS417_22895 -0.7 -2.7 tyrosine recombinase XerD compare
PS417_04650 -0.7 -0.4 D-alanine--D-alanine ligase compare
PS417_06600 -0.6 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_22350 -0.6 -1.7 Fis family transcriptional regulator compare
PS417_06040 -0.6 -2.0 hypothetical protein compare
PS417_05365 -0.6 -1.0 FAD-binding protein compare
PS417_18060 -0.6 -1.9 general secretion pathway protein GspJ compare
PS417_19970 -0.6 -2.9 recombinase RmuC compare
PS417_20130 -0.6 -4.5 dehydrogenase compare
PS417_24115 -0.6 -1.5 hypothetical protein compare
PS417_27835 -0.6 -3.5 endoribonuclease compare
PS417_08510 -0.6 -1.5 LysR family transcriptional regulator compare
PS417_26445 -0.6 -1.4 ArsR family transcriptional regulator compare
PS417_28075 -0.6 -3.0 phosphate ABC transporter permease compare
PS417_08990 -0.6 -1.8 ABC transporter substrate-binding protein compare
PS417_18250 -0.6 -1.9 chemotaxis protein compare
PS417_14980 -0.6 -0.9 universal stress protein UspA compare
PS417_07410 -0.6 -1.6 hypothetical protein compare
PS417_06150 -0.6 -1.5 SAM-dependent methlyltransferase compare
PS417_09570 -0.6 -2.9 GCN5 family acetyltransferase compare
PS417_23910 -0.6 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_23810 -0.6 -3.7 acetolactate synthase 3 catalytic subunit compare
PS417_00345 -0.6 -1.3 copper-binding protein compare
PS417_03300 -0.6 -1.4 alanine acetyltransferase compare
PS417_10530 -0.6 -3.3 LysR family transcriptional regulator compare
PS417_18585 -0.6 -2.5 3-isopropylmalate dehydrogenase compare
PS417_23835 -0.6 -2.2 hypothetical protein compare
PS417_09680 -0.6 -1.2 hydrolase compare
PS417_12310 -0.6 -2.6 methionine synthase compare
PS417_27245 -0.6 -1.2 aminotransferase DegT compare
PS417_06895 -0.6 -1.6 DNA-binding protein compare
PS417_12355 -0.6 -1.3 magnesium chelatase compare
PS417_10425 -0.6 -1.3 hypothetical protein compare
PS417_19400 -0.6 -2.2 amino acid transporter LysE compare
PS417_15800 -0.6 -3.1 photosynthetic protein synthase I compare
PS417_00045 -0.6 -1.1 glycerol acyltransferase compare
PS417_11670 -0.6 -1.9 multidrug transporter MATE compare
PS417_19675 -0.6 -1.9 chemotaxis protein CheY compare
PS417_06635 -0.6 -1.0 ferredoxin compare
PS417_19645 -0.6 -1.1 chemotaxis protein compare
PS417_05815 -0.6 -2.0 recombinase RecA compare
PS417_21105 -0.6 -3.7 aminodeoxychorismate synthase compare
PS417_17560 -0.6 -2.2 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_02975 -0.5 -2.3 3-dehydroquinate dehydratase compare
PS417_18420 -0.5 -1.8 deoxyribonuclease compare
PS417_22215 -0.5 -2.5 membrane protein compare
PS417_21845 -0.5 -1.0 membrane protein compare
PS417_00380 -0.5 -0.8 zinc ABC transporter ATP-binding protein compare
PS417_25720 -0.5 -3.3 anthranilate synthase component II compare
PS417_27605 -0.5 -2.8 hypothetical protein compare
PS417_13425 -0.5 -1.3 cupin compare
PS417_09235 -0.5 -0.7 molecular chaperone compare
PS417_26685 -0.5 -1.0 hypothetical protein compare
PS417_00085 -0.5 -1.0 16S rRNA methyltransferase compare
PS417_01620 -0.5 -1.7 preprotein translocase subunit SecB compare
PS417_11540 -0.5 -1.8 NAD synthetase compare
PS417_12015 -0.5 -2.0 phosphoglycerate mutase compare
PS417_26280 -0.5 -1.0 NADPH:quinone reductase compare
PS417_14305 -0.5 -1.5 hydroxyproline-2-epimerase compare
PS417_16125 -0.5 -2.7 AraC family transcriptional regulator compare
PS417_18780 -0.5 -1.0 flavin reductase compare
PS417_21795 -0.5 -2.8 ABC transporter substrate-binding protein compare
PS417_09210 -0.5 -1.0 TetR family transcriptional regulator compare
PS417_05575 -0.5 -2.9 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_06775 -0.5 -2.3 antibiotic transporter compare
PS417_24775 -0.5 -1.4 dehydratase compare
PS417_23375 -0.5 -0.8 cytochrome C oxidase compare
PS417_22205 -0.5 -2.1 potassium transporter TrkH compare
PS417_24320 -0.5 -2.0 large-conductance mechanosensitive channel compare
PS417_09590 -0.5 -1.9 membrane protein compare
PS417_14840 -0.5 -1.1 abortive phage infection protein compare
PS417_07740 -0.5 -2.7 tRNA-dihydrouridine synthase A compare
PS417_27585 -0.5 -1.0 diaminopimelate epimerase compare
PS417_28085 -0.5 -3.9 phosphate-binding protein compare
PS417_07305 -0.5 -1.1 3-beta hydroxysteroid dehydrogenase compare
PS417_19995 -0.5 -2.9 Long-chain fatty acid transport protein compare
PS417_13840 -0.5 -2.5 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_15710 -0.5 -1.5 nitrate reductase compare
PS417_23095 -0.5 -0.7 exodeoxyribonuclease compare
PS417_02885 -0.5 -1.5 hypothetical protein compare
PS417_09580 -0.5 -1.4 tyrosyl-trna synthetase compare
PS417_16080 -0.5 -1.7 AraC family transcriptional regulator compare
PS417_00185 -0.5 -1.5 tryptophan synthase subunit beta compare
PS417_22400 -0.5 -2.8 7-cyano-7-deazaguanine synthase compare
PS417_04055 -0.5 -2.0 peptide transporter compare
PS417_18540 -0.5 -1.6 colicin V production CvpA compare
PS417_20170 -0.5 -1.4 hypothetical protein compare
PS417_07640 -0.5 -1.5 glyceraldehyde-3-phosphate dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Fraxetin across organisms