Experiment set33S252 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_08220 -4.6 -2.1 epimerase compare
PS417_27300 -4.2 -1.8 cell division protein ZapA compare
PS417_28050 -3.8 -3.4 hypothetical protein compare
PS417_05975 -3.7 -1.6 chemotaxis protein CheW compare
PS417_23380 -3.1 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_23915 -3.0 -4.9 pantoate--beta-alanine ligase compare
PS417_21430 -2.7 -1.9 3-oxoacyl-ACP synthase compare
PS417_03260 -2.6 -1.5 5S ribosomal RNA compare
PS417_01605 -2.4 -1.6 phosphoglycerate mutase compare
PS417_10645 -2.3 -7.2 magnesium ABC transporter ATPase compare
PS417_06680 -2.2 -4.4 nuclease PIN compare
PS417_27835 -2.1 -5.3 endoribonuclease compare
PS417_26990 -2.0 -1.2 RNA pyrophosphohydrolase compare
PS417_00385 -2.0 -1.8 Fur family transcriptional regulator compare
PS417_01855 -2.0 -3.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_22935 -2.0 -3.7 hypothetical protein compare
PS417_08090 -2.0 -1.2 3-oxoacyl-ACP reductase compare
PS417_18310 -2.0 -1.3 hypothetical protein compare
PS417_13510 -2.0 -1.5 polyketide cyclase compare
PS417_17215 -1.9 -2.9 peptidylprolyl isomerase compare
PS417_06245 -1.9 -1.8 zinc metallopeptidase RseP compare
PS417_23950 -1.9 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_04380 -1.9 -1.3 ABC transporter permease compare
PS417_26730 -1.9 -1.1 pyrroline-5-carboxylate reductase compare
PS417_24605 -1.8 -3.6 thiamine-phosphate pyrophosphorylase compare
PS417_20855 -1.8 -1.6 hypothetical protein compare
PS417_18545 -1.8 -3.3 cell division protein compare
PS417_23385 -1.8 -6.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_26775 -1.8 -5.7 thiazole synthase compare
PS417_21480 -1.7 -1.6 23S rRNA pseudouridylate synthase compare
PS417_04390 -1.7 -2.7 toluene tolerance protein compare
PS417_07470 -1.7 -1.8 hypothetical protein compare
PS417_12005 -1.7 -2.5 hypothetical protein compare
PS417_00920 -1.7 -4.5 diguanylate cyclase compare
PS417_04585 -1.7 -2.0 hypothetical protein compare
PS417_22450 -1.7 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_02555 -1.6 -9.1 exoribonuclease R compare
PS417_16555 -1.6 -1.5 cupin compare
PS417_00080 -1.6 -6.0 potassium transporter peripheral membrane component compare
PS417_06375 -1.6 -0.7 deoxycytidine triphosphate deaminase compare
PS417_23375 -1.6 -2.2 cytochrome C oxidase compare
PS417_24600 -1.6 -6.1 hydrogenase compare
PS417_22565 -1.6 -0.7 formyltetrahydrofolate deformylase compare
PS417_08125 -1.6 -0.7 prephenate dehydratase compare
PS417_27135 -1.5 -1.0 glutamine synthetase compare
PS417_07170 -1.5 -3.3 hypothetical protein compare
PS417_03385 -1.4 -1.7 flavin reductase compare
PS417_00345 -1.4 -1.9 copper-binding protein compare
PS417_07615 -1.4 -4.2 TetR family transcriptional regulator compare
PS417_24710 -1.4 -6.0 lipoprotein compare
PS417_22620 -1.4 -3.1 pyruvate kinase compare
PS417_22205 -1.4 -5.1 potassium transporter TrkH compare
PS417_01185 -1.3 -3.9 ribosomal protein S6 modification protein compare
PS417_03560 -1.3 -1.4 GTP-binding protein compare
PS417_23545 -1.3 -1.7 gamma-glutamyl kinase compare
PS417_23995 -1.3 -1.0 preprotein translocase subunit SecG compare
PS417_00705 -1.3 -2.1 MarR family transcriptional regulator compare
PS417_04590 -1.3 -4.1 methyltransferase compare
PS417_22400 -1.3 -7.3 7-cyano-7-deazaguanine synthase compare
PS417_23370 -1.3 -3.1 protoheme IX farnesyltransferase compare
PS417_06205 -1.2 -5.6 methionine aminopeptidase compare
PS417_15100 -1.2 -2.1 BatB protein compare
PS417_10265 -1.2 -2.9 peptidase compare
PS417_05985 -1.2 -1.6 chemotaxis protein CheY compare
PS417_15090 -1.2 -2.1 hypothetical protein compare
PS417_25390 -1.2 -2.4 MFS transporter compare
PS417_24115 -1.2 -2.1 hypothetical protein compare
PS417_07140 -1.2 -2.7 peptidase M48 compare
PS417_24615 -1.2 -1.4 hypothetical protein compare
PS417_16370 -1.2 -5.7 chemotaxis protein CheY compare
PS417_04385 -1.1 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_10720 -1.1 -4.5 chemotaxis protein CheY compare
PS417_02280 -1.1 -0.9 GlcNAc-PI de-N-acetylase compare
PS417_25320 -1.1 -8.3 dTDP-4-dehydrorhamnose reductase compare
PS417_04365 -1.1 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08365 -1.1 -1.1 hypothetical protein compare
PS417_06770 -1.1 -3.5 multidrug transporter compare
PS417_08730 -1.1 -1.6 cytochrome C compare
PS417_02255 -1.1 -2.7 lipopolysaccharide kinase compare
PS417_27425 -1.1 -4.4 exopolyphosphatase compare
PS417_22530 -1.1 -2.9 hypothetical protein compare
PS417_27605 -1.0 -4.9 hypothetical protein compare
PS417_06540 -1.0 -1.0 membrane protein compare
PS417_19350 -1.0 -2.9 GTP cyclohydrolase compare
PS417_09830 -1.0 -4.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_25315 -1.0 -2.8 membrane protein compare
PS417_26800 -1.0 -4.6 cell division protein FtsX compare
PS417_02950 -1.0 -2.4 tRNA-dihydrouridine synthase B compare
PS417_04440 -1.0 -2.0 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_06530 -1.0 -2.1 membrane protein compare
PS417_21425 -1.0 -1.9 4-amino-4-deoxychorismate lyase compare
PS417_14890 -1.0 -1.9 LysR family transcriptional regulator compare
PS417_21625 -1.0 -1.0 DNA-binding protein compare
PS417_07120 -1.0 -4.0 RNA polymerase sigma-H factor compare
PS417_15935 -1.0 -1.6 Rrf2 family transcriptional regulator compare
PS417_10040 -1.0 -1.0 MFS transporter compare
PS417_02270 -1.0 -2.4 carbamoyltransferase compare
PS417_27360 -1.0 -2.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_12310 -1.0 -3.4 methionine synthase compare
PS417_27520 -1.0 -2.1 uroporphyrin-III methyltransferase compare
PS417_26985 -0.9 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_06150 -0.9 -2.3 SAM-dependent methlyltransferase compare
PS417_17675 -0.9 -1.5 ABC transporter compare
PS417_00925 -0.9 -1.6 hypothetical protein compare
PS417_19305 -0.9 -3.0 acireductone dioxygenase compare
PS417_07695 -0.9 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_15095 -0.9 -1.7 hypothetical protein compare
PS417_19955 -0.9 -1.3 hypothetical protein compare
PS417_23095 -0.9 -1.1 exodeoxyribonuclease compare
PS417_28510 -0.9 -3.9 chromosome partitioning protein compare
PS417_10810 -0.9 -1.5 hypothetical protein compare
PS417_17780 -0.9 -1.2 Ais protein compare
PS417_26695 -0.9 -1.3 uracil phosphoribosyltransferase compare
PS417_26420 -0.9 -1.1 hypothetical protein compare
PS417_12805 -0.9 -4.9 glycogen branching protein compare
PS417_23390 -0.9 -2.8 ubiquinol oxidase subunit II compare
PS417_01795 -0.9 -5.9 glucosyltransferase MdoH compare
PS417_14655 -0.9 -1.1 lysine transporter LysE compare
PS417_18355 -0.9 -3.7 DNA-binding protein compare
PS417_27005 -0.9 -1.0 membrane protein compare
PS417_24385 -0.9 -3.4 tRNA (uracil-5-)-methyltransferase compare
PS417_08170 -0.9 -4.6 capsular biosynthesis protein compare
PS417_21185 -0.9 -2.1 hypothetical protein compare
PS417_13620 -0.9 -1.3 thermostable hemolysin compare
PS417_02485 -0.9 -2.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_09865 -0.9 -1.0 hypothetical protein compare
PS417_04595 -0.9 -1.4 cell division protein MraZ compare
PS417_20705 -0.9 -1.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_08540 -0.9 -1.6 RNA helicase compare
PS417_22575 -0.8 -3.4 exonuclease I compare
PS417_25270 -0.8 -1.7 NrdR family transcriptional regulator compare
PS417_23135 -0.8 -1.4 GTP-binding protein compare
PS417_27245 -0.8 -1.3 aminotransferase DegT compare
PS417_24745 -0.8 -1.5 gamma-glutamyl phosphate reductase compare
PS417_05575 -0.8 -4.6 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_00450 -0.8 -2.2 chemotaxis protein CheY compare
PS417_27795 -0.8 -0.5 orotate phosphoribosyltransferase compare
PS417_19995 -0.8 -4.0 Long-chain fatty acid transport protein compare
PS417_08945 -0.8 -3.9 heat shock protein 90 compare
PS417_06365 -0.8 -4.0 RNA polymerase sigma factor compare
PS417_14065 -0.8 -4.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_27865 -0.8 -2.1 LysR family transcriptional regulator compare
PS417_04475 -0.8 -1.8 hypothetical protein compare
PS417_08025 -0.8 -0.9 acetylornithine aminotransferase compare
PS417_23105 -0.8 -1.3 hypothetical protein compare
PS417_07565 -0.8 -1.1 hypothetical protein compare
PS417_22690 -0.8 -1.9 phosphogluconate dehydratase compare
PS417_23820 -0.8 -3.1 hypothetical protein compare
PS417_01715 -0.8 -1.1 hypothetical protein compare
PS417_08410 -0.8 -1.2 hypothetical protein compare
PS417_24525 -0.8 -1.0 nuclease compare
PS417_14305 -0.8 -1.9 hydroxyproline-2-epimerase compare
PS417_21850 -0.8 -1.0 LysR family transcriptional regulator compare
PS417_09010 -0.8 -1.6 phosphohistidine phosphatase compare
PS417_20280 -0.8 -2.6 mechanosensitive ion channel protein MscS compare
PS417_24675 -0.7 -1.6 lipoyl synthase compare
PS417_01790 -0.7 -4.1 glucan biosynthesis protein G compare
PS417_13445 -0.7 -1.4 D-aminopeptidase compare
PS417_27690 -0.7 -2.6 XRE family transcriptional regulator compare
PS417_03300 -0.7 -1.4 alanine acetyltransferase compare
PS417_00510 -0.7 -0.5 membrane protein compare
PS417_09915 -0.7 -1.1 hypothetical protein compare
PS417_17795 -0.7 -1.4 ABC transporter permease compare
PS417_19600 -0.7 -1.0 exonuclease compare
PS417_09210 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_04800 -0.7 -1.3 alginate O-acetyltransferase compare
PS417_19705 -0.7 -1.4 flagellar biosynthesis regulator FlhF compare
PS417_01565 -0.7 -3.2 imidazole glycerol phosphate synthase compare
PS417_00825 -0.7 -2.2 recombinase RecF compare
PS417_02415 -0.7 -2.1 phosphoserine phosphatase compare
PS417_27945 -0.7 -0.9 type VI secretion protein ImpA compare
PS417_06970 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_00475 -0.7 -2.9 membrane protein compare
PS417_10125 -0.7 -1.3 hypothetical protein compare
PS417_04420 -0.7 -3.3 histidinol dehydrogenase compare
PS417_27295 -0.7 -1.6 hypothetical protein compare
PS417_09420 -0.7 -1.0 LysR family transcriptional regulator compare
PS417_01600 -0.7 -3.4 peptidase M23 compare
PS417_11180 -0.7 -2.0 TetR family transcriptional regulator compare
PS417_07305 -0.7 -1.7 3-beta hydroxysteroid dehydrogenase compare
PS417_13425 -0.7 -1.3 cupin compare
PS417_18540 -0.7 -1.6 colicin V production CvpA compare
PS417_22405 -0.7 -3.2 7-carboxy-7-deazaguanine synthase compare
PS417_01710 -0.7 -3.0 histidine utilization repressor compare
PS417_24580 -0.7 -1.3 pseudouridine synthase compare
PS417_08155 -0.7 -0.7 integration host factor subunit beta compare
PS417_25290 -0.7 -1.5 hypothetical protein compare
PS417_01280 -0.7 -1.9 peptidoglycan-binding protein LysM compare
PS417_06200 -0.7 -2.3 protein-PII uridylyltransferase compare
PS417_16855 -0.7 -1.4 cation:proton antiporter compare
PS417_00590 -0.7 -1.8 5S ribosomal RNA compare
PS417_23250 -0.7 -2.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_28070 -0.7 -3.6 phosphate ABC transporter ATP-binding protein compare
PS417_18010 -0.6 -2.2 acid phosphatase compare
PS417_11585 -0.6 -1.4 LuxR family transcriptional regulator compare
PS417_08680 -0.6 -2.0 flagellar biosynthesis protein FlhB compare
PS417_20875 -0.6 -2.0 chromosome segregation protein SMC compare
PS417_18060 -0.6 -1.3 general secretion pathway protein GspJ compare
PS417_11475 -0.6 -1.4 membrane protein compare
PS417_27705 -0.6 -1.1 amino acid dehydrogenase compare


Specific Phenotypes

For 3 genes in this experiment

For liquid stress Scopoletin in Pseudomonas simiae WCS417

For liquid stress Scopoletin across organisms