Experiment set33S251 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23950 -3.9 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_16555 -3.0 -2.0 cupin compare
PS417_22450 -2.8 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_16490 -2.8 -1.6 cell division protein FtsK compare
PS417_28050 -2.7 -2.1 hypothetical protein compare
PS417_27795 -2.6 -1.1 orotate phosphoribosyltransferase compare
PS417_24605 -2.5 -2.9 thiamine-phosphate pyrophosphorylase compare
PS417_06600 -2.4 -1.5 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_01915 -2.2 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23915 -2.2 -4.1 pantoate--beta-alanine ligase compare
PS417_27195 -2.1 -1.8 N-acetylglutamate synthase compare
PS417_26775 -2.1 -10.1 thiazole synthase compare
PS417_04365 -2.0 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01605 -2.0 -1.4 phosphoglycerate mutase compare
PS417_13510 -1.9 -1.4 polyketide cyclase compare
PS417_08090 -1.9 -1.1 3-oxoacyl-ACP reductase compare
PS417_08410 -1.9 -2.8 hypothetical protein compare
PS417_27870 -1.8 -2.1 ATP-dependent DNA helicase RecG compare
PS417_18310 -1.8 -1.2 hypothetical protein compare
PS417_01030 -1.8 -2.1 glutamine ABC transporter substrate-binding protein compare
PS417_27865 -1.7 -2.5 LysR family transcriptional regulator compare
PS417_25710 -1.7 -1.8 indole-3-glycerol-phosphate synthase compare
PS417_01855 -1.7 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_26335 -1.6 -2.7 BetI family transcriptional regulator compare
PS417_00920 -1.6 -3.6 diguanylate cyclase compare
PS417_03560 -1.6 -1.5 GTP-binding protein compare
PS417_26730 -1.6 -0.9 pyrroline-5-carboxylate reductase compare
PS417_08155 -1.6 -1.5 integration host factor subunit beta compare
PS417_24600 -1.6 -4.6 hydrogenase compare
PS417_24705 -1.6 -1.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_19350 -1.5 -3.8 GTP cyclohydrolase compare
PS417_08545 -1.5 -2.4 aromatic ring-opening dioxygenase LigB compare
PS417_23375 -1.5 -2.0 cytochrome C oxidase compare
PS417_08125 -1.5 -0.6 prephenate dehydratase compare
PS417_17070 -1.4 -2.2 RNA polymerase subunit sigma-24 compare
PS417_22565 -1.4 -0.6 formyltetrahydrofolate deformylase compare
PS417_20705 -1.4 -2.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_06375 -1.4 -0.6 deoxycytidine triphosphate deaminase compare
PS417_10645 -1.4 -4.1 magnesium ABC transporter ATPase compare
PS417_04595 -1.4 -1.8 cell division protein MraZ compare
PS417_07615 -1.3 -4.1 TetR family transcriptional regulator compare
PS417_02270 -1.3 -2.1 carbamoyltransferase compare
PS417_20725 -1.3 -1.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_06680 -1.3 -3.4 nuclease PIN compare
PS417_21655 -1.3 -1.3 aspartate kinase compare
PS417_20785 -1.3 -1.8 transcriptional regulator compare
PS417_21475 -1.3 -2.0 HAD family hydrolase compare
PS417_02555 -1.3 -7.2 exoribonuclease R compare
PS417_24710 -1.3 -6.1 lipoprotein compare
PS417_27040 -1.2 -1.6 3-phosphoglycerate dehydrogenase compare
PS417_07470 -1.2 -1.3 hypothetical protein compare
PS417_21425 -1.2 -2.1 4-amino-4-deoxychorismate lyase compare
PS417_20025 -1.2 -0.9 alpha-ribazole phosphatase compare
PS417_01850 -1.2 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27360 -1.2 -3.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_00385 -1.1 -1.2 Fur family transcriptional regulator compare
PS417_27835 -1.1 -6.2 endoribonuclease compare
PS417_18545 -1.1 -2.4 cell division protein compare
PS417_16195 -1.1 -1.2 AraC family transcriptional regulator compare
PS417_20880 -1.1 -1.3 GntR family transcriptional regulator compare
PS417_24935 -1.1 -1.0 hypothetical protein compare
PS417_15095 -1.1 -2.4 hypothetical protein compare
PS417_24745 -1.1 -1.6 gamma-glutamyl phosphate reductase compare
PS417_20635 -1.1 -1.0 ABC transporter ATP-binding protein compare
PS417_22620 -1.1 -3.1 pyruvate kinase compare
PS417_07710 -1.1 -1.6 membrane protein compare
PS417_02225 -1.0 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_06145 -1.0 -1.1 hypothetical protein compare
PS417_01920 -1.0 -0.8 ATP-dependent protease subunit HslV compare
PS417_23475 -1.0 -1.3 hypothetical protein compare
PS417_08185 -1.0 -2.8 glycosyl transferase compare
PS417_02280 -1.0 -0.6 GlcNAc-PI de-N-acetylase compare
PS417_27425 -1.0 -4.2 exopolyphosphatase compare
PS417_23545 -1.0 -1.0 gamma-glutamyl kinase compare
PS417_27705 -1.0 -1.4 amino acid dehydrogenase compare
PS417_04390 -1.0 -2.1 toluene tolerance protein compare
PS417_01095 -1.0 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_19415 -1.0 -2.2 allantoinase compare
PS417_23370 -1.0 -1.8 protoheme IX farnesyltransferase compare
PS417_08200 -1.0 -2.2 hypothetical protein compare
PS417_09235 -1.0 -0.9 molecular chaperone compare
PS417_02975 -1.0 -3.2 3-dehydroquinate dehydratase compare
PS417_22530 -1.0 -3.3 hypothetical protein compare
PS417_12035 -1.0 -2.4 dihydroxyacetone kinase compare
PS417_11400 -1.0 -1.4 phosphoglycerate mutase compare
PS417_08170 -0.9 -5.3 capsular biosynthesis protein compare
PS417_05595 -0.9 -5.2 ornithine carbamoyltransferase compare
PS417_03100 -0.9 -0.9 pilus assembly protein compare
PS417_27245 -0.9 -1.3 aminotransferase DegT compare
PS417_16065 -0.9 -1.5 3-phytase compare
PS417_23385 -0.9 -4.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_00080 -0.9 -4.6 potassium transporter peripheral membrane component compare
PS417_09595 -0.9 -3.5 membrane protein compare
PS417_19995 -0.9 -4.4 Long-chain fatty acid transport protein compare
PS417_21625 -0.9 -0.9 DNA-binding protein compare
PS417_07865 -0.9 -2.0 hypothetical protein compare
PS417_16715 -0.9 -1.2 DoxX family protein compare
PS417_02485 -0.9 -1.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02880 -0.9 -1.1 copper chaperone compare
PS417_27610 -0.9 -2.9 hypothetical protein compare
PS417_19305 -0.9 -2.9 acireductone dioxygenase compare
PS417_12005 -0.9 -2.4 hypothetical protein compare
PS417_00375 -0.9 -1.6 membrane protein compare
PS417_05470 -0.9 -2.4 DSBA oxidoreductase compare
PS417_02980 -0.9 -1.1 chemotaxis protein compare
PS417_27605 -0.8 -2.9 hypothetical protein compare
PS417_19645 -0.8 -2.1 chemotaxis protein compare
PS417_10245 -0.8 -1.1 hypothetical protein compare
PS417_03260 -0.8 -0.8 5S ribosomal RNA compare
PS417_07575 -0.8 -2.5 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_23910 -0.8 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_06895 -0.8 -2.0 DNA-binding protein compare
PS417_05820 -0.8 -1.9 recombinase RecX compare
PS417_05500 -0.8 -2.2 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_23380 -0.8 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_24370 -0.8 -0.7 (2Fe-2S)-binding protein compare
PS417_21480 -0.8 -0.9 23S rRNA pseudouridylate synthase compare
PS417_23825 -0.8 -2.6 penicillin-binding protein compare
PS417_04800 -0.8 -1.8 alginate O-acetyltransferase compare
PS417_08540 -0.8 -1.4 RNA helicase compare
PS417_12565 -0.8 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_00380 -0.8 -1.6 zinc ABC transporter ATP-binding protein compare
PS417_07565 -0.8 -1.5 hypothetical protein compare
PS417_08220 -0.8 -0.7 epimerase compare
PS417_28510 -0.8 -3.6 chromosome partitioning protein compare
PS417_20715 -0.8 -1.3 cytochrome Cbb3 compare
PS417_16560 -0.8 -1.8 GNAT family acetyltransferase compare
PS417_26275 -0.8 -2.0 glycine/betaine ABC transporter substrate-binding protein compare
PS417_08575 -0.8 -1.4 MarR family transcriptional regulator compare
PS417_00660 -0.8 -1.8 DSBA oxidoreductase compare
PS417_04585 -0.8 -1.1 hypothetical protein compare
PS417_07120 -0.8 -1.9 RNA polymerase sigma-H factor compare
PS417_13620 -0.7 -0.9 thermostable hemolysin compare
PS417_18235 -0.7 -2.3 nitrile hydratase compare
PS417_28225 -0.7 -1.0 hypothetical protein compare
PS417_05235 -0.7 -1.5 peptidase inhibitor I42 compare
PS417_15750 -0.7 -1.3 protease compare
PS417_10985 -0.7 -0.8 NADH:flavin oxidoreductase compare
PS417_06455 -0.7 -1.7 Fe(II)-dependent oxygenase compare
PS417_25320 -0.7 -4.2 dTDP-4-dehydrorhamnose reductase compare
PS417_14540 -0.7 -1.1 cytochrome C oxidase subunit III compare
PS417_13255 -0.7 -1.1 ABC transporter compare
PS417_12310 -0.7 -3.1 methionine synthase compare
PS417_09625 -0.7 -2.3 sugar ABC transporter substrate-binding protein compare
PS417_04960 -0.7 -1.2 hypothetical protein compare
PS417_13640 -0.7 -1.3 ribose ABC transporter permease compare
PS417_23360 -0.7 -0.7 hypothetical protein compare
PS417_06365 -0.7 -2.9 RNA polymerase sigma factor compare
PS417_23995 -0.7 -0.6 preprotein translocase subunit SecG compare
PS417_05735 -0.7 -2.6 tail fiber protein compare
PS417_10145 -0.7 -1.8 hypothetical protein compare
PS417_15285 -0.7 -0.8 type VI secretion protein compare
PS417_08435 -0.7 -0.9 pilus assembly protein PilZ compare
PS417_18370 -0.7 -1.6 hypothetical protein compare
PS417_02370 -0.7 -1.0 ADP-ribose pyrophosphatase compare
PS417_16080 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_27935 -0.7 -0.9 type VI secretion protein compare
PS417_05365 -0.7 -0.9 FAD-binding protein compare
PS417_07165 -0.7 -2.5 dihydrodipicolinate synthase compare
PS417_26985 -0.7 -2.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_22935 -0.7 -1.7 hypothetical protein compare
PS417_04060 -0.7 -1.7 dipeptide ABC transporter, permease component (from data) compare
PS417_03465 -0.7 -0.9 type III secretion protein compare
PS417_27785 -0.7 -2.5 phosphoglucomutase compare
PS417_24675 -0.7 -0.8 lipoyl synthase compare
PS417_05100 -0.7 -1.3 RNA polymerase sigma factor compare
PS417_25120 -0.7 -2.5 capsular biosynthesis protein compare
PS417_15110 -0.7 -2.1 protein BatD compare
PS417_02255 -0.7 -1.0 lipopolysaccharide kinase compare
PS417_05975 -0.6 -0.5 chemotaxis protein CheW compare
PS417_09635 -0.6 -3.5 mannose-1-phosphate guanylyltransferase compare
PS417_09045 -0.6 -1.9 histidine kinase compare
PS417_11925 -0.6 -1.0 hypothetical protein compare
PS417_06770 -0.6 -3.0 multidrug transporter compare
PS417_04590 -0.6 -2.0 methyltransferase compare
PS417_16510 -0.6 -1.3 Clp protease ClpX compare
PS417_16710 -0.6 -2.0 hydrolase compare
PS417_04475 -0.6 -1.9 hypothetical protein compare
PS417_15085 -0.6 -1.8 ATPase AAA compare
PS417_14605 -0.6 -1.3 adenylate kinase compare
PS417_14590 -0.6 -0.8 LysR family transcriptional regulator compare
PS417_09330 -0.6 -1.3 NAD(P)H-quinone oxidoreductase compare
PS417_12805 -0.6 -3.5 glycogen branching protein compare
PS417_09615 -0.6 -1.8 glycosyl transferase family 1 compare
PS417_07815 -0.6 -2.1 hypothetical protein compare
PS417_01945 -0.6 -1.2 nuclease compare
PS417_11390 -0.6 -2.0 LysR family transcriptional regulator compare
PS417_27305 -0.6 -2.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_19275 -0.6 -0.6 hypothetical protein compare
PS417_21105 -0.6 -3.2 aminodeoxychorismate synthase compare
PS417_15235 -0.6 -1.9 short-chain dehydrogenase compare
PS417_21535 -0.6 -1.6 chemotaxis protein CheY compare
PS417_03080 -0.6 -0.8 hypothetical protein compare
PS417_19155 -0.6 -2.3 DSBA oxidoreductase compare
PS417_18460 -0.6 -2.2 transcriptional regulator compare
PS417_05865 -0.6 -1.2 hypothetical protein compare
PS417_04420 -0.6 -2.6 histidinol dehydrogenase compare
PS417_19665 -0.6 -1.9 flagellar motor protein MotD compare
PS417_27910 -0.6 -1.3 PppA compare
PS417_22400 -0.6 -3.3 7-cyano-7-deazaguanine synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Scopoletin across organisms