Experiment set33S250 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 1 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23950 -4.6 -3.2 polynucleotide phosphorylase/polyadenylase compare
PS417_23915 -4.4 -5.2 pantoate--beta-alanine ligase compare
PS417_21480 -4.3 -2.9 23S rRNA pseudouridylate synthase compare
PS417_27795 -3.2 -1.4 orotate phosphoribosyltransferase compare
PS417_28050 -3.0 -3.7 hypothetical protein compare
PS417_21430 -2.6 -2.5 3-oxoacyl-ACP synthase compare
PS417_04365 -2.4 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_18310 -2.4 -1.6 hypothetical protein compare
PS417_26730 -2.2 -1.3 pyrroline-5-carboxylate reductase compare
PS417_16490 -2.1 -1.7 cell division protein FtsK compare
PS417_26775 -1.9 -8.1 thiazole synthase compare
PS417_08125 -1.8 -0.7 prephenate dehydratase compare
PS417_06375 -1.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_03560 -1.7 -1.8 GTP-binding protein compare
PS417_06680 -1.7 -4.7 nuclease PIN compare
PS417_24605 -1.5 -3.4 thiamine-phosphate pyrophosphorylase compare
PS417_22570 -1.5 -1.1 H-NS histone compare
PS417_00370 -1.5 -1.4 hypothetical protein compare
PS417_17215 -1.5 -1.9 peptidylprolyl isomerase compare
PS417_24600 -1.4 -5.5 hydrogenase compare
PS417_20715 -1.3 -2.0 cytochrome Cbb3 compare
PS417_24710 -1.2 -7.8 lipoprotein compare
PS417_27135 -1.2 -0.9 glutamine synthetase compare
PS417_00345 -1.2 -2.3 copper-binding protein compare
PS417_19285 -1.2 -1.9 ankyrin compare
PS417_10645 -1.2 -4.1 magnesium ABC transporter ATPase compare
PS417_04380 -1.2 -0.9 ABC transporter permease compare
PS417_10480 -1.2 -1.6 glutathione S-transferase compare
PS417_02270 -1.1 -1.8 carbamoyltransferase compare
PS417_21425 -1.1 -2.1 4-amino-4-deoxychorismate lyase compare
PS417_23375 -1.1 -1.6 cytochrome C oxidase compare
PS417_04585 -1.1 -1.4 hypothetical protein compare
PS417_26990 -1.1 -0.7 RNA pyrophosphohydrolase compare
PS417_02555 -1.1 -6.0 exoribonuclease R compare
PS417_24745 -1.0 -1.5 gamma-glutamyl phosphate reductase compare
PS417_02485 -1.0 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21655 -1.0 -1.2 aspartate kinase compare
PS417_08540 -1.0 -1.9 RNA helicase compare
PS417_03815 -1.0 -1.7 DNA transporter compare
PS417_27640 -1.0 -1.3 TetR family transcriptional regulator compare
PS417_19350 -1.0 -2.2 GTP cyclohydrolase compare
PS417_20855 -1.0 -1.4 hypothetical protein compare
PS417_25390 -1.0 -3.0 MFS transporter compare
PS417_18235 -0.9 -3.0 nitrile hydratase compare
PS417_27870 -0.9 -1.5 ATP-dependent DNA helicase RecG compare
PS417_15095 -0.9 -1.5 hypothetical protein compare
PS417_02255 -0.9 -1.1 lipopolysaccharide kinase compare
PS417_22450 -0.9 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_02415 -0.9 -2.7 phosphoserine phosphatase compare
PS417_01855 -0.9 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_08335 -0.8 -1.6 hypothetical protein compare
PS417_01715 -0.8 -1.4 hypothetical protein compare
PS417_00995 -0.8 -2.1 alpha/beta hydrolase compare
PS417_07710 -0.8 -1.8 membrane protein compare
PS417_27245 -0.8 -1.6 aminotransferase DegT compare
PS417_14400 -0.8 -1.0 hypothetical protein compare
PS417_09160 -0.8 -2.1 GNAT family acetyltransferase compare
PS417_13855 -0.8 -1.2 acetyl-CoA acetyltransferase compare
PS417_00920 -0.8 -2.6 diguanylate cyclase compare
PS417_04385 -0.8 -1.3 organic solvent ABC transporter substrate-binding protein compare
PS417_06095 -0.8 -1.6 energy transducer TonB compare
PS417_03455 -0.8 -0.8 type III secretion protein compare
PS417_06895 -0.8 -1.4 DNA-binding protein compare
PS417_18020 -0.8 -1.4 hypothetical protein compare
PS417_07565 -0.8 -1.0 hypothetical protein compare
PS417_23385 -0.8 -3.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_22530 -0.8 -3.3 hypothetical protein compare
PS417_00080 -0.8 -4.3 potassium transporter peripheral membrane component compare
PS417_09245 -0.8 -0.7 recombinase RdgC compare
PS417_19160 -0.7 -4.3 hypothetical protein compare
PS417_22260 -0.7 -2.1 segregation and condensation protein B compare
PS417_10040 -0.7 -0.9 MFS transporter compare
PS417_13075 -0.7 -1.4 hypothetical protein compare
PS417_09830 -0.7 -3.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_26175 -0.7 -0.8 sarcosine oxidase subunit gamma compare
PS417_24705 -0.7 -1.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_24310 -0.7 -1.9 ankyrin compare
PS417_12015 -0.7 -2.5 phosphoglycerate mutase compare
PS417_19675 -0.7 -2.7 chemotaxis protein CheY compare
PS417_23370 -0.7 -1.7 protoheme IX farnesyltransferase compare
PS417_23810 -0.7 -4.0 acetolactate synthase 3 catalytic subunit compare
PS417_02575 -0.7 -2.6 membrane protein compare
PS417_06245 -0.7 -0.7 zinc metallopeptidase RseP compare
PS417_11925 -0.7 -1.3 hypothetical protein compare
PS417_14140 -0.7 -0.9 membrane protein compare
PS417_02770 -0.7 -1.2 membrane protein compare
PS417_06365 -0.7 -4.0 RNA polymerase sigma factor compare
PS417_07615 -0.7 -2.2 TetR family transcriptional regulator compare
PS417_12805 -0.7 -4.7 glycogen branching protein compare
PS417_09915 -0.6 -0.6 hypothetical protein compare
PS417_00590 -0.6 -1.5 5S ribosomal RNA compare
PS417_01565 -0.6 -2.5 imidazole glycerol phosphate synthase compare
PS417_22065 -0.6 -4.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_28515 -0.6 -1.4 16S rRNA methyltransferase compare
PS417_21090 -0.6 -1.2 hypothetical protein compare
PS417_15235 -0.6 -2.3 short-chain dehydrogenase compare
PS417_10010 -0.6 -1.9 Replication protein P compare
PS417_07770 -0.6 -1.4 hypothetical protein compare
PS417_25030 -0.6 -1.6 hypothetical protein compare
PS417_16665 -0.6 -1.3 hypothetical protein compare
PS417_13425 -0.6 -1.3 cupin compare
PS417_19665 -0.6 -2.4 flagellar motor protein MotD compare
PS417_23390 -0.6 -3.3 ubiquinol oxidase subunit II compare
PS417_09505 -0.6 -1.5 hypothetical protein compare
PS417_15765 -0.6 -2.7 molybdopterin biosynthesis protein B compare
PS417_07700 -0.6 -1.3 chromosome partitioning protein ParA compare
PS417_15885 -0.6 -1.2 GCN5 family acetyltransferase compare
PS417_10840 -0.6 -0.7 amidase compare
PS417_04420 -0.6 -3.5 histidinol dehydrogenase compare
PS417_18425 -0.6 -0.9 sporulation protein compare
PS417_27705 -0.6 -1.2 amino acid dehydrogenase compare
PS417_04390 -0.6 -1.6 toluene tolerance protein compare
PS417_02105 -0.6 -2.0 acyl carrier protein compare
PS417_13195 -0.6 -2.1 RND transporter MFP subunit compare
PS417_08410 -0.6 -1.1 hypothetical protein compare
PS417_15585 -0.6 -1.6 DNA repair nucleotidyltransferase compare
PS417_22935 -0.6 -1.4 hypothetical protein compare
PS417_27195 -0.6 -0.9 N-acetylglutamate synthase compare
PS417_22050 -0.6 -1.8 ribonuclease BN compare
PS417_20115 -0.6 -1.3 hypothetical protein compare
PS417_20985 -0.6 -0.4 porin compare
PS417_03380 -0.6 -0.9 hypothetical protein compare
PS417_23900 -0.6 -3.3 poly(A) polymerase compare
PS417_23505 -0.6 -1.5 cell division protein DedD compare
PS417_01580 -0.6 -0.8 imidazole glycerol phosphate synthase compare
PS417_09600 -0.6 -1.7 glycosyl transferase family 1 compare
PS417_02320 -0.5 -1.8 metal ABC transporter ATPase compare
PS417_01955 -0.5 -3.5 peptidase compare
PS417_22445 -0.5 -0.9 ATP-dependent DNA helicase RuvB compare
PS417_26695 -0.5 -0.8 uracil phosphoribosyltransferase compare
PS417_23995 -0.5 -0.6 preprotein translocase subunit SecG compare
PS417_19275 -0.5 -0.9 hypothetical protein compare
PS417_27140 -0.5 -2.3 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_27595 -0.5 -0.8 recombinase XerC compare
PS417_05235 -0.5 -1.0 peptidase inhibitor I42 compare
PS417_08170 -0.5 -3.8 capsular biosynthesis protein compare
PS417_18930 -0.5 -1.1 restriction endonuclease subunit S compare
PS417_00385 -0.5 -0.8 Fur family transcriptional regulator compare
PS417_10955 -0.5 -1.2 porin compare
PS417_27425 -0.5 -2.6 exopolyphosphatase compare
PS417_05595 -0.5 -3.9 ornithine carbamoyltransferase compare
PS417_10860 -0.5 -1.5 flagellar basal body rod protein FlgG compare
PS417_04440 -0.5 -0.8 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_14890 -0.5 -0.8 LysR family transcriptional regulator compare
PS417_27835 -0.5 -3.6 endoribonuclease compare
PS417_27605 -0.5 -2.9 hypothetical protein compare
PS417_07245 -0.5 -0.5 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_18635 -0.5 -1.5 4-hydroxybenzoyl-CoA thioesterase compare
PS417_22620 -0.5 -1.1 pyruvate kinase compare
PS417_00180 -0.5 -1.1 tryptophan synthase subunit alpha compare
PS417_18590 -0.5 -1.6 SAM-dependent methyltransferase compare
PS417_06335 -0.5 -1.5 S-formylglutathione hydrolase compare
PS417_21105 -0.5 -3.0 aminodeoxychorismate synthase compare
PS417_04305 -0.5 -0.9 aspartate ammonia-lyase compare
PS417_22680 -0.5 -1.7 chemotaxis protein CheY compare
PS417_13305 -0.5 -0.9 hypothetical protein compare
PS417_08990 -0.5 -2.2 ABC transporter substrate-binding protein compare
PS417_17755 -0.5 -1.2 hypothetical protein compare
PS417_22535 -0.5 -1.7 ornithine acetyltransferase compare
PS417_24525 -0.5 -0.8 nuclease compare
PS417_05165 -0.5 -1.5 cytosol aminopeptidase compare
PS417_24115 -0.5 -0.6 hypothetical protein compare
PS417_18395 -0.5 -1.1 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_06620 -0.5 -1.4 hypothetical protein compare
PS417_23605 -0.5 -1.8 permease DsdX compare
PS417_27305 -0.5 -2.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_18445 -0.5 -0.8 glycerol-3-phosphatase compare
PS417_00475 -0.5 -2.5 membrane protein compare
PS417_15455 -0.5 -2.1 ABC transporter substrate-binding protein compare
PS417_27360 -0.5 -1.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_21320 -0.5 -1.6 transcriptional regulator compare
PS417_07575 -0.5 -1.4 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_23580 -0.5 -0.9 peptidylprolyl isomerase compare
PS417_09630 -0.5 -1.9 glycosyl transferase compare
PS417_12585 -0.5 -2.6 acriflavine resistance protein B compare
PS417_05325 -0.5 -0.9 fimbrial protein compare
PS417_01850 -0.5 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_17305 -0.5 -0.9 hypothetical protein compare
PS417_12935 -0.5 -1.5 RNA polymerase sigma factor compare
PS417_26390 -0.5 -1.2 acyltransferase compare
PS417_11425 -0.5 -2.1 transcriptional regulator compare
PS417_06730 -0.5 -0.9 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_25320 -0.5 -2.7 dTDP-4-dehydrorhamnose reductase compare
PS417_13620 -0.5 -0.5 thermostable hemolysin compare
PS417_06400 -0.5 -1.8 succinylglutamate desuccinylase compare
PS417_27490 -0.5 -0.9 hypothetical protein compare
PS417_05635 -0.5 -3.3 membrane protein compare
PS417_19305 -0.5 -1.3 acireductone dioxygenase compare
PS417_09035 -0.5 -1.8 hypothetical protein compare
PS417_09335 -0.5 -1.1 HAD family hydrolase compare
PS417_09330 -0.5 -1.1 NAD(P)H-quinone oxidoreductase compare
PS417_05575 -0.4 -3.0 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_11715 -0.4 -1.7 chromophore maturation protein PvdO compare
PS417_09930 -0.4 -0.8 hypothetical protein compare
PS417_22015 -0.4 -2.2 hypothetical protein compare
PS417_02975 -0.4 -1.5 3-dehydroquinate dehydratase compare
PS417_16515 -0.4 -1.3 Clp protease ClpS compare
PS417_21625 -0.4 -0.5 DNA-binding protein compare
PS417_22205 -0.4 -2.4 potassium transporter TrkH compare
PS417_23825 -0.4 -2.2 penicillin-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Scopoletin across organisms