Experiment set33S248 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_05975 -3.3 -1.5 chemotaxis protein CheW compare
PS417_13510 -2.5 -1.6 polyketide cyclase compare
PS417_21625 -2.4 -1.6 DNA-binding protein compare
PS417_28050 -2.2 -1.7 hypothetical protein compare
PS417_27585 -2.1 -2.1 diaminopimelate epimerase compare
PS417_02280 -2.0 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_27870 -2.0 -1.9 ATP-dependent DNA helicase RecG compare
PS417_06685 -2.0 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_20855 -1.9 -1.2 hypothetical protein compare
PS417_24935 -1.8 -1.4 hypothetical protein compare
PS417_09595 -1.7 -4.4 membrane protein compare
PS417_27300 -1.7 -1.1 cell division protein ZapA compare
PS417_08090 -1.7 -1.0 3-oxoacyl-ACP reductase compare
PS417_27075 -1.7 -2.5 thiol-disulfide isomerase compare
PS417_23950 -1.7 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_26990 -1.6 -1.0 RNA pyrophosphohydrolase compare
PS417_11400 -1.6 -2.1 phosphoglycerate mutase compare
PS417_09590 -1.6 -4.0 membrane protein compare
PS417_21425 -1.6 -2.0 4-amino-4-deoxychorismate lyase compare
PS417_08335 -1.6 -2.1 hypothetical protein compare
PS417_23915 -1.6 -3.2 pantoate--beta-alanine ligase compare
PS417_23775 -1.6 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_02485 -1.5 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_10645 -1.5 -4.2 magnesium ABC transporter ATPase compare
PS417_12565 -1.5 -2.4 2-dehydro-3-deoxygluconokinase compare
PS417_19655 -1.4 -2.7 chemotaxis protein CheW compare
PS417_09330 -1.4 -3.0 NAD(P)H-quinone oxidoreductase compare
PS417_24605 -1.4 -2.9 thiamine-phosphate pyrophosphorylase compare
PS417_18310 -1.4 -0.9 hypothetical protein compare
PS417_03100 -1.4 -1.0 pilus assembly protein compare
PS417_03380 -1.4 -1.5 hypothetical protein compare
PS417_24600 -1.3 -4.9 hydrogenase compare
PS417_19350 -1.3 -3.0 GTP cyclohydrolase compare
PS417_06710 -1.3 -1.8 beta-ketoadipyl CoA thiolase compare
PS417_26850 -1.3 -1.0 twin-arginine translocation pathway signal protein compare
PS417_08125 -1.3 -0.5 prephenate dehydratase compare
PS417_06375 -1.2 -0.5 deoxycytidine triphosphate deaminase compare
PS417_01855 -1.2 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_21480 -1.2 -1.2 23S rRNA pseudouridylate synthase compare
PS417_06540 -1.2 -1.2 membrane protein compare
PS417_06680 -1.2 -2.9 nuclease PIN compare
PS417_23375 -1.2 -1.0 cytochrome C oxidase compare
PS417_27135 -1.2 -0.7 glutamine synthetase compare
PS417_17945 -1.2 -0.9 hypothetical protein compare
PS417_09625 -1.2 -2.2 sugar ABC transporter substrate-binding protein compare
PS417_15100 -1.1 -1.8 BatB protein compare
PS417_17645 -1.1 -1.5 RND transporter compare
PS417_11440 -1.1 -1.7 hypothetical protein compare
PS417_09600 -1.1 -3.4 glycosyl transferase family 1 compare
PS417_27360 -1.1 -2.5 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_08410 -1.0 -1.7 hypothetical protein compare
PS417_14850 -1.0 -2.2 hypothetical protein compare
PS417_18545 -1.0 -2.0 cell division protein compare
PS417_02575 -1.0 -2.6 membrane protein compare
PS417_02475 -1.0 -1.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_05365 -1.0 -1.5 FAD-binding protein compare
PS417_00180 -1.0 -1.3 tryptophan synthase subunit alpha compare
PS417_25720 -1.0 -4.2 anthranilate synthase component II compare
PS417_15540 -1.0 -1.5 NUDIX hydrolase compare
PS417_27605 -1.0 -4.2 hypothetical protein compare
PS417_03830 -1.0 -5.1 protein disaggregation chaperone compare
PS417_09830 -1.0 -3.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_00550 -1.0 -1.0 hypothetical protein compare
PS417_00385 -0.9 -1.0 Fur family transcriptional regulator compare
PS417_26530 -0.9 -1.0 hypothetical protein compare
PS417_09420 -0.9 -1.4 LysR family transcriptional regulator compare
PS417_27865 -0.9 -2.0 LysR family transcriptional regulator compare
PS417_27425 -0.9 -4.1 exopolyphosphatase compare
PS417_21210 -0.9 -1.6 amidotransferase compare
PS417_10405 -0.9 -1.0 filamentous hemagglutinin compare
PS417_04965 -0.9 -1.6 hypothetical protein compare
PS417_15400 -0.9 -1.2 hypothetical protein compare
PS417_22570 -0.9 -0.7 H-NS histone compare
PS417_24765 -0.9 -2.7 membrane protein compare
PS417_28510 -0.9 -3.7 chromosome partitioning protein compare
PS417_02555 -0.9 -5.2 exoribonuclease R compare
PS417_06735 -0.9 -1.4 3-oxoadipate enol-lactonase compare
PS417_19705 -0.9 -1.2 flagellar biosynthesis regulator FlhF compare
PS417_24570 -0.9 -3.1 AsnC family transcriptional regulator compare
PS417_13710 -0.9 -2.1 hypothetical protein compare
PS417_27195 -0.9 -0.9 N-acetylglutamate synthase compare
PS417_26420 -0.9 -1.3 hypothetical protein compare
PS417_10675 -0.9 -0.9 TetR family transcriptional regulator compare
PS417_26775 -0.9 -4.6 thiazole synthase compare
PS417_26335 -0.9 -1.7 BetI family transcriptional regulator compare
PS417_00590 -0.8 -1.2 5S ribosomal RNA compare
PS417_05535 -0.8 -1.0 Fis family transcriptional regulator compare
PS417_22840 -0.8 -0.8 tRNA-Met compare
PS417_21105 -0.8 -3.8 aminodeoxychorismate synthase compare
PS417_26770 -0.8 -1.2 tRNA (guanine-N7)-methyltransferase compare
PS417_17565 -0.8 -2.3 branched-chain amino acid aminotransferase compare
PS417_22690 -0.8 -1.4 phosphogluconate dehydratase compare
PS417_21320 -0.8 -2.5 transcriptional regulator compare
PS417_25985 -0.8 -1.5 dethiobiotin synthetase compare
PS417_04500 -0.8 -1.1 hypothetical protein compare
PS417_11725 -0.8 -1.7 peptidase M19 compare
PS417_19645 -0.8 -1.4 chemotaxis protein compare
PS417_00465 -0.8 -2.4 hypothetical protein compare
PS417_05695 -0.8 -2.3 transcriptional regulator compare
PS417_04050 -0.8 -1.7 peptide ABC transporter ATP-binding protein compare
PS417_02255 -0.8 -2.1 lipopolysaccharide kinase compare
PS417_12310 -0.8 -3.2 methionine synthase compare
PS417_02070 -0.8 -0.9 membrane protein compare
PS417_15110 -0.8 -3.2 protein BatD compare
PS417_11705 -0.8 -3.1 cyclic peptide transporter compare
PS417_03385 -0.8 -1.0 flavin reductase compare
PS417_04365 -0.8 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_28020 -0.8 -1.6 chorismate--pyruvate lyase compare
PS417_09585 -0.8 -4.0 acetyltransferase compare
PS417_25390 -0.8 -1.5 MFS transporter compare
PS417_13490 -0.8 -1.1 hypothetical protein compare
PS417_02780 -0.8 -2.7 DNA-binding protein compare
PS417_01185 -0.8 -3.6 ribosomal protein S6 modification protein compare
PS417_05550 -0.8 -2.7 amino acid ABC transporter permease compare
PS417_26240 -0.8 -0.8 N-methylproline demethylase compare
PS417_19190 -0.7 -1.8 BolA family transcriptional regulator compare
PS417_27910 -0.7 -2.0 PppA compare
PS417_08170 -0.7 -4.1 capsular biosynthesis protein compare
PS417_11810 -0.7 -1.7 oxidoreductase compare
PS417_24560 -0.7 -1.6 ferrous iron transporter compare
PS417_22065 -0.7 -3.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_18355 -0.7 -3.3 DNA-binding protein compare
PS417_07120 -0.7 -2.4 RNA polymerase sigma-H factor compare
PS417_10860 -0.7 -1.6 flagellar basal body rod protein FlgG compare
PS417_19650 -0.7 -2.0 chemotaxis protein CheW compare
PS417_00185 -0.7 -1.6 tryptophan synthase subunit beta compare
PS417_23810 -0.7 -3.3 acetolactate synthase 3 catalytic subunit compare
PS417_02270 -0.7 -1.5 carbamoyltransferase compare
PS417_24525 -0.7 -1.1 nuclease compare
PS417_22530 -0.7 -1.9 hypothetical protein compare
PS417_18540 -0.7 -2.2 colicin V production CvpA compare
PS417_01965 -0.7 -1.1 fimbriae biosynthesis protein compare
PS417_19675 -0.7 -2.5 chemotaxis protein CheY compare
PS417_01270 -0.7 -1.2 iron ABC transporter substrate-binding protein compare
PS417_20785 -0.7 -1.1 transcriptional regulator compare
PS417_03705 -0.7 -2.0 2-alkenal reductase compare
PS417_22400 -0.7 -3.8 7-cyano-7-deazaguanine synthase compare
PS417_08770 -0.7 -1.5 hypothetical protein compare
PS417_11480 -0.7 -1.6 hypothetical protein compare
PS417_15445 -0.7 -2.7 ABC transporter permease compare
PS417_23250 -0.7 -2.4 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_27640 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_07455 -0.7 -0.8 glutamine amidotransferase compare
PS417_02805 -0.7 -1.0 urease subunit gamma compare
PS417_18600 -0.7 -1.8 isopropylmalate isomerase compare
PS417_02950 -0.7 -1.7 tRNA-dihydrouridine synthase B compare
PS417_08295 -0.7 -1.3 ATPase compare
PS417_05470 -0.7 -1.5 DSBA oxidoreductase compare
PS417_04915 -0.7 -1.2 glutamine ABC transporter ATP-binding protein compare
PS417_17320 -0.7 -1.3 phenylhydantoinase compare
PS417_26120 -0.7 -1.1 hypothetical protein compare
PS417_12900 -0.7 -2.0 Fe-S protein compare
PS417_02210 -0.7 -3.0 diguanylate cyclase compare
PS417_22345 -0.7 -1.4 acetyl-CoA carboxylase compare
PS417_15435 -0.7 -2.1 metallophosphatase compare
PS417_27835 -0.6 -3.3 endoribonuclease compare
PS417_04865 -0.6 -1.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_15480 -0.6 -0.7 ABC transporter substrate-binding protein compare
PS417_18090 -0.6 -2.5 iron ABC transporter compare
PS417_28230 -0.6 -1.5 transcriptional regulator compare
PS417_00920 -0.6 -2.6 diguanylate cyclase compare
PS417_26260 -0.6 -1.1 hypothetical protein compare
PS417_21830 -0.6 -2.3 TetR family transcriptional regulator compare
PS417_03260 -0.6 -0.7 5S ribosomal RNA compare
PS417_13400 -0.6 -1.7 pirin compare
PS417_18370 -0.6 -1.4 hypothetical protein compare
PS417_01850 -0.6 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23025 -0.6 -1.8 murein transglycosylase compare
PS417_01285 -0.6 -0.9 haloacid dehalogenase compare
PS417_21710 -0.6 -2.0 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_21600 -0.6 -2.4 pilus assembly protein PilZ compare
PS417_02880 -0.6 -0.5 copper chaperone compare
PS417_21630 -0.6 -0.8 magnesium transporter compare
PS417_14400 -0.6 -1.7 hypothetical protein compare
PS417_20340 -0.6 -1.0 hypothetical protein compare
PS417_08220 -0.6 -0.6 epimerase compare
PS417_11615 -0.6 -1.1 urea ABC transporter ATP-binding protein compare
PS417_08505 -0.6 -1.8 membrane protein compare
PS417_06365 -0.6 -3.1 RNA polymerase sigma factor compare
PS417_12765 -0.6 -2.0 oxidoreductase compare
PS417_23845 -0.6 -2.1 hemin ABC transporter ATP-binding protein compare
PS417_18860 -0.6 -2.4 transcriptional regulator compare
PS417_15085 -0.6 -1.5 ATPase AAA compare
PS417_14655 -0.6 -0.7 lysine transporter LysE compare
PS417_13055 -0.6 -1.4 aminotransferase compare
PS417_25825 -0.6 -1.7 sulfurtransferase compare
PS417_01565 -0.6 -2.5 imidazole glycerol phosphate synthase compare
PS417_17795 -0.6 -1.0 ABC transporter permease compare
PS417_14140 -0.6 -1.4 membrane protein compare
PS417_22870 -0.6 -0.8 lipoprotein compare
PS417_22405 -0.6 -2.0 7-carboxy-7-deazaguanine synthase compare
PS417_17140 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_13145 -0.6 -0.9 50S ribosomal protein L21 compare
PS417_20030 -0.6 -1.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_20950 -0.6 -1.3 hypothetical protein compare
PS417_06205 -0.6 -2.9 methionine aminopeptidase compare
PS417_19605 -0.6 -0.6 hypothetical protein compare
PS417_17400 -0.6 -2.1 TetR family transcriptional regulator compare
PS417_05045 -0.6 -1.9 acetamidase compare
PS417_07865 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For liquid stress 80% Methanol in Pseudomonas simiae WCS417

For liquid stress 80% Methanol across organisms