Experiment set33S247 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23950 -3.8 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_23915 -3.7 -4.4 pantoate--beta-alanine ligase compare
PS417_05975 -3.5 -1.5 chemotaxis protein CheW compare
PS417_20855 -3.5 -2.1 hypothetical protein compare
PS417_08410 -2.9 -2.6 hypothetical protein compare
PS417_26335 -2.5 -2.2 BetI family transcriptional regulator compare
PS417_00920 -2.4 -6.3 diguanylate cyclase compare
PS417_28050 -2.4 -1.9 hypothetical protein compare
PS417_03260 -2.3 -1.3 5S ribosomal RNA compare
PS417_02280 -2.0 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_04365 -2.0 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_13620 -2.0 -2.7 thermostable hemolysin compare
PS417_18545 -1.9 -3.3 cell division protein compare
PS417_16555 -1.9 -1.8 cupin compare
PS417_27300 -1.8 -1.1 cell division protein ZapA compare
PS417_24605 -1.8 -3.3 thiamine-phosphate pyrophosphorylase compare
PS417_04595 -1.7 -2.1 cell division protein MraZ compare
PS417_26990 -1.7 -1.0 RNA pyrophosphohydrolase compare
PS417_02975 -1.7 -2.6 3-dehydroquinate dehydratase compare
PS417_06245 -1.7 -1.6 zinc metallopeptidase RseP compare
PS417_18310 -1.7 -1.1 hypothetical protein compare
PS417_06680 -1.6 -3.4 nuclease PIN compare
PS417_19350 -1.6 -3.4 GTP cyclohydrolase compare
PS417_19995 -1.6 -6.6 Long-chain fatty acid transport protein compare
PS417_26775 -1.6 -5.6 thiazole synthase compare
PS417_21105 -1.6 -7.9 aminodeoxychorismate synthase compare
PS417_04305 -1.5 -1.8 aspartate ammonia-lyase compare
PS417_02880 -1.5 -1.6 copper chaperone compare
PS417_26805 -1.5 -1.3 cell division protein FtsE compare
PS417_23545 -1.5 -2.0 gamma-glutamyl kinase compare
PS417_08170 -1.5 -8.3 capsular biosynthesis protein compare
PS417_24600 -1.5 -4.4 hydrogenase compare
PS417_00345 -1.5 -1.7 copper-binding protein compare
PS417_04380 -1.5 -1.0 ABC transporter permease compare
PS417_23580 -1.5 -1.7 peptidylprolyl isomerase compare
PS417_10645 -1.4 -4.3 magnesium ABC transporter ATPase compare
PS417_24935 -1.4 -1.3 hypothetical protein compare
PS417_24710 -1.4 -5.8 lipoprotein compare
PS417_22450 -1.4 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_06375 -1.4 -0.6 deoxycytidine triphosphate deaminase compare
PS417_25720 -1.4 -6.7 anthranilate synthase component II compare
PS417_09915 -1.4 -2.0 hypothetical protein compare
PS417_13730 -1.4 -2.8 hypothetical protein compare
PS417_01715 -1.3 -1.6 hypothetical protein compare
PS417_07820 -1.3 -1.7 transposase compare
PS417_07875 -1.3 -1.2 hypothetical protein compare
PS417_15135 -1.2 -1.3 hypothetical protein compare
PS417_11570 -1.2 -2.8 ABC transporter permease compare
PS417_01605 -1.2 -1.0 phosphoglycerate mutase compare
PS417_16855 -1.2 -1.5 cation:proton antiporter compare
PS417_02805 -1.2 -1.6 urease subunit gamma compare
PS417_07615 -1.2 -3.8 TetR family transcriptional regulator compare
PS417_06095 -1.1 -1.8 energy transducer TonB compare
PS417_17805 -1.1 -1.4 microcin B17 processing protein McbC compare
PS417_21430 -1.1 -1.1 3-oxoacyl-ACP synthase compare
PS417_15090 -1.1 -1.2 hypothetical protein compare
PS417_16195 -1.1 -1.2 AraC family transcriptional regulator compare
PS417_20875 -1.1 -3.7 chromosome segregation protein SMC compare
PS417_20705 -1.1 -2.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_20785 -1.0 -1.7 transcriptional regulator compare
PS417_01855 -1.0 -2.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_25985 -1.0 -1.8 dethiobiotin synthetase compare
PS417_06365 -1.0 -3.9 RNA polymerase sigma factor compare
PS417_19190 -1.0 -2.7 BolA family transcriptional regulator compare
PS417_27040 -1.0 -2.1 3-phosphoglycerate dehydrogenase compare
PS417_03300 -1.0 -2.0 alanine acetyltransferase compare
PS417_20880 -1.0 -1.1 GntR family transcriptional regulator compare
PS417_27865 -1.0 -2.0 LysR family transcriptional regulator compare
PS417_02765 -0.9 -1.5 phosphate starvation-inducible protein PsiF compare
PS417_22575 -0.9 -4.3 exonuclease I compare
PS417_19095 -0.9 -0.9 hypothetical protein compare
PS417_22620 -0.9 -2.1 pyruvate kinase compare
PS417_15325 -0.9 -1.2 type VI secretion protein compare
PS417_27595 -0.9 -1.6 recombinase XerC compare
PS417_08155 -0.9 -0.9 integration host factor subunit beta compare
PS417_10720 -0.9 -5.6 chemotaxis protein CheY compare
PS417_22530 -0.9 -2.8 hypothetical protein compare
PS417_11615 -0.9 -1.7 urea ABC transporter ATP-binding protein compare
PS417_16665 -0.9 -1.5 hypothetical protein compare
PS417_21630 -0.9 -1.2 magnesium transporter compare
PS417_05045 -0.9 -3.0 acetamidase compare
PS417_12005 -0.9 -2.4 hypothetical protein compare
PS417_02950 -0.9 -1.5 tRNA-dihydrouridine synthase B compare
PS417_09470 -0.9 -1.0 hypothetical protein compare
PS417_09615 -0.9 -3.0 glycosyl transferase family 1 compare
PS417_18425 -0.9 -1.1 sporulation protein compare
PS417_05985 -0.9 -1.2 chemotaxis protein CheY compare
PS417_27910 -0.8 -2.0 PppA compare
PS417_22260 -0.8 -2.1 segregation and condensation protein B compare
PS417_27075 -0.8 -1.3 thiol-disulfide isomerase compare
PS417_05695 -0.8 -2.5 transcriptional regulator compare
PS417_16775 -0.8 -2.1 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_09830 -0.8 -2.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_22705 -0.8 -1.5 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_27605 -0.8 -3.8 hypothetical protein compare
PS417_00705 -0.8 -1.1 MarR family transcriptional regulator compare
PS417_15095 -0.8 -2.0 hypothetical protein compare
PS417_27425 -0.8 -4.3 exopolyphosphatase compare
PS417_02210 -0.8 -2.9 diguanylate cyclase compare
PS417_20025 -0.8 -1.1 alpha-ribazole phosphatase compare
PS417_07470 -0.8 -1.0 hypothetical protein compare
PS417_08580 -0.8 -2.7 histidine kinase compare
PS417_05860 -0.8 -1.7 hypothetical protein compare
PS417_27835 -0.8 -4.4 endoribonuclease compare
PS417_08220 -0.8 -0.7 epimerase compare
PS417_05235 -0.8 -1.5 peptidase inhibitor I42 compare
PS417_18370 -0.8 -1.5 hypothetical protein compare
PS417_07410 -0.8 -1.7 hypothetical protein compare
PS417_22060 -0.8 -1.0 hypothetical protein compare
PS417_19970 -0.7 -3.0 recombinase RmuC compare
PS417_05595 -0.7 -3.3 ornithine carbamoyltransferase compare
PS417_23135 -0.7 -1.2 GTP-binding protein compare
PS417_20365 -0.7 -2.2 Cro/Cl family transcriptional regulator compare
PS417_27585 -0.7 -0.9 diaminopimelate epimerase compare
PS417_28315 -0.7 -1.7 zinc ABC transporter permease compare
PS417_24620 -0.7 -1.4 hypothetical protein compare
PS417_19065 -0.7 -0.8 monooxygenase compare
PS417_07015 -0.7 -2.3 helicase compare
PS417_02575 -0.7 -2.0 membrane protein compare
PS417_27785 -0.7 -2.5 phosphoglucomutase compare
PS417_05120 -0.7 -1.6 RNA polymerase subunit sigma-24 compare
PS417_03145 -0.7 -0.9 acetyl-CoA acetyltransferase compare
PS417_04410 -0.7 -1.5 hypothetical protein compare
PS417_23025 -0.7 -2.1 murein transglycosylase compare
PS417_26370 -0.7 -1.3 RNA helicase compare
PS417_17840 -0.7 -1.7 betaine-aldehyde dehydrogenase compare
PS417_27810 -0.7 -3.8 ribonuclease PH compare
PS417_09640 -0.7 -3.5 capsular biosynthesis protein compare
PS417_27180 -0.7 -1.6 peroxidase compare
PS417_04390 -0.7 -1.1 toluene tolerance protein compare
PS417_18235 -0.7 -2.1 nitrile hydratase compare
PS417_02175 -0.7 -1.6 transcriptional regulator compare
PS417_08730 -0.7 -0.9 cytochrome C compare
PS417_17755 -0.7 -1.5 hypothetical protein compare
PS417_03455 -0.7 -0.9 type III secretion protein compare
PS417_06745 -0.7 -1.4 polysaccharide deacetylase compare
PS417_19155 -0.7 -3.1 DSBA oxidoreductase compare
PS417_20715 -0.7 -0.9 cytochrome Cbb3 compare
PS417_02555 -0.6 -3.8 exoribonuclease R compare
PS417_28510 -0.6 -2.0 chromosome partitioning protein compare
PS417_00510 -0.6 -0.9 membrane protein compare
PS417_28030 -0.6 -1.6 hypothetical protein compare
PS417_23825 -0.6 -2.4 penicillin-binding protein compare
PS417_26145 -0.6 -1.3 hypothetical protein compare
PS417_07950 -0.6 -1.6 MFS transporter compare
PS417_01885 -0.6 -2.0 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_02270 -0.6 -1.1 carbamoyltransferase compare
PS417_04475 -0.6 -1.5 hypothetical protein compare
PS417_26515 -0.6 -1.5 hypothetical protein compare
PS417_21515 -0.6 -4.1 transcriptional regulator compare
PS417_03780 -0.6 -1.1 general secretion pathway protein GspH compare
PS417_21425 -0.6 -1.2 4-amino-4-deoxychorismate lyase compare
PS417_16715 -0.6 -0.8 DoxX family protein compare
PS417_12540 -0.6 -1.9 hypothetical protein compare
PS417_01565 -0.6 -2.0 imidazole glycerol phosphate synthase compare
PS417_19955 -0.6 -0.9 hypothetical protein compare
PS417_06100 -0.6 -1.1 SAM-dependent methyltransferase compare
PS417_24835 -0.6 -2.3 hypothetical protein compare
PS417_22400 -0.6 -3.7 7-cyano-7-deazaguanine synthase compare
PS417_26260 -0.6 -1.1 hypothetical protein compare
PS417_21600 -0.6 -2.6 pilus assembly protein PilZ compare
PS417_06865 -0.6 -1.5 transporter compare
PS417_02040 -0.6 -2.5 3-hydroxylacyl-ACP dehydratase compare
PS417_27925 -0.6 -1.8 hypothetical protein compare
PS417_10105 -0.6 -2.3 hypothetical protein compare
PS417_19145 -0.6 -4.2 membrane protein compare
PS417_27245 -0.6 -0.9 aminotransferase DegT compare
PS417_00380 -0.6 -1.2 zinc ABC transporter ATP-binding protein compare
PS417_12530 -0.6 -2.0 LysR family transcriptional regulator compare
PS417_09630 -0.6 -2.1 glycosyl transferase compare
PS417_27640 -0.6 -0.7 TetR family transcriptional regulator compare
PS417_11720 -0.6 -1.6 class V aminotransferase compare
PS417_02415 -0.6 -1.7 phosphoserine phosphatase compare
PS417_03465 -0.6 -0.8 type III secretion protein compare
PS417_19720 -0.6 -1.1 DNA-binding protein compare
PS417_03970 -0.6 -1.0 1-phosphofructokinase compare
PS417_08230 -0.6 -0.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_15770 -0.6 -0.8 pyridoxine 5'-phosphate oxidase compare
PS417_16510 -0.6 -1.7 Clp protease ClpX compare
PS417_08295 -0.6 -2.3 ATPase compare
PS417_26755 -0.6 -1.5 nucleoside-triphosphate diphosphatase compare
PS417_06145 -0.6 -0.7 hypothetical protein compare
PS417_12125 -0.6 -3.1 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) compare
PS417_13900 -0.6 -2.7 chemotaxis protein CheR compare
PS417_22610 -0.6 -2.3 pilus assembly protein PilZ compare
PS417_26530 -0.6 -0.8 hypothetical protein compare
PS417_26770 -0.6 -1.4 tRNA (guanine-N7)-methyltransferase compare
PS417_07795 -0.6 -1.9 hypothetical protein compare
PS417_06150 -0.6 -1.2 SAM-dependent methlyltransferase compare
PS417_10550 -0.6 -2.0 DNA topoisomerase III compare
PS417_08315 -0.6 -2.2 hypothetical protein compare
PS417_08190 -0.6 -3.9 membrane protein compare
PS417_10815 -0.6 -2.3 TetR family transcriptional regulator compare
PS417_15475 -0.6 -2.1 IclR family transcriptional regulator compare
PS417_04875 -0.6 -0.5 molybdenum cofactor biosynthesis protein MoaE compare
PS417_02485 -0.6 -1.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08685 -0.6 -0.8 flagellar hook-length control protein FliK compare
PS417_18570 -0.6 -1.7 peptidoglycan-binding protein compare
PS417_16160 -0.6 -1.3 ABC transporter substrate-binding protein compare
PS417_07120 -0.6 -1.9 RNA polymerase sigma-H factor compare


Specific Phenotypes

For 4 genes in this experiment

For liquid stress 80% Methanol in Pseudomonas simiae WCS417

For liquid stress 80% Methanol across organisms