Experiment set32S573 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -6.3 -4.4 LysR family transcriptional regulator compare
PS417_00650 -4.9 -1.9 LysR family transcriptional regulator compare
PS417_00660 -4.8 -4.7 DSBA oxidoreductase compare
PS417_00665 -4.4 -7.1 RND transporter compare
PS417_21480 -4.3 -2.7 23S rRNA pseudouridylate synthase compare
PS417_28070 -3.9 -7.4 phosphate ABC transporter ATP-binding protein compare
PS417_28085 -3.8 -13.3 phosphate-binding protein compare
PS417_27835 -3.8 -8.0 endoribonuclease compare
PS417_06775 -3.7 -8.7 antibiotic transporter compare
PS417_28080 -3.6 -14.6 phosphate ABC transporter permease compare
PS417_14045 -3.4 -7.2 alkyl hydroperoxide reductase compare
PS417_10645 -3.4 -10.3 magnesium ABC transporter ATPase compare
PS417_06770 -3.3 -6.4 multidrug transporter compare
PS417_00655 -3.1 -5.0 DSBA oxidoreductase compare
PS417_27605 -3.0 -6.1 hypothetical protein compare
PS417_24615 -3.0 -2.3 hypothetical protein compare
PS417_23385 -2.9 -7.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_05590 -2.9 -9.7 iron ABC transporter ATP-binding protein compare
PS417_23380 -2.9 -3.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_27195 -2.8 -2.1 N-acetylglutamate synthase compare
PS417_01915 -2.7 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_26605 -2.7 -1.8 malonate decarboxylase subunit beta compare
PS417_27300 -2.6 -1.4 cell division protein ZapA compare
PS417_22935 -2.6 -4.4 hypothetical protein compare
PS417_26985 -2.6 -5.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_28050 -2.5 -1.8 hypothetical protein compare
PS417_28075 -2.4 -5.0 phosphate ABC transporter permease compare
PS417_18310 -2.3 -1.5 hypothetical protein compare
PS417_26990 -2.3 -1.2 RNA pyrophosphohydrolase compare
PS417_27870 -2.2 -3.0 ATP-dependent DNA helicase RecG compare
PS417_22735 -2.2 -11.3 thiol oxidoreductase compare
PS417_22195 -2.1 -7.2 peptidase compare
PS417_04380 -2.1 -1.4 ABC transporter permease compare
PS417_27585 -2.1 -2.6 diaminopimelate epimerase compare
PS417_17215 -2.1 -2.5 peptidylprolyl isomerase compare
PS417_02485 -2.1 -3.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_00345 -2.1 -3.1 copper-binding protein compare
PS417_16555 -2.1 -1.7 cupin compare
PS417_06680 -2.0 -5.2 nuclease PIN compare
PS417_02555 -2.0 -9.5 exoribonuclease R compare
PS417_16370 -1.9 -10.3 chemotaxis protein CheY compare
PS417_07615 -1.9 -5.5 TetR family transcriptional regulator compare
PS417_20855 -1.9 -1.7 hypothetical protein compare
PS417_07140 -1.9 -3.8 peptidase M48 compare
PS417_22565 -1.8 -0.7 formyltetrahydrofolate deformylase compare
PS417_06375 -1.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_01185 -1.8 -6.0 ribosomal protein S6 modification protein compare
PS417_22570 -1.8 -1.2 H-NS histone compare
PS417_27610 -1.8 -4.6 hypothetical protein compare
PS417_01955 -1.8 -10.7 peptidase compare
PS417_10720 -1.7 -3.8 chemotaxis protein CheY compare
PS417_23390 -1.7 -5.2 ubiquinol oxidase subunit II compare
PS417_12750 -1.7 -6.0 acriflavine resistance protein B compare
PS417_23375 -1.7 -1.8 cytochrome C oxidase compare
PS417_03990 -1.7 -11.3 ligand-gated channel protein compare
PS417_27640 -1.7 -1.6 TetR family transcriptional regulator compare
PS417_12755 -1.6 -4.3 RND transporter compare
PS417_02975 -1.6 -3.4 3-dehydroquinate dehydratase compare
PS417_05365 -1.6 -1.7 FAD-binding protein compare
PS417_06365 -1.5 -7.4 RNA polymerase sigma factor compare
PS417_21430 -1.5 -1.7 3-oxoacyl-ACP synthase compare
PS417_18545 -1.5 -3.1 cell division protein compare
PS417_01620 -1.5 -2.6 preprotein translocase subunit SecB compare
PS417_22450 -1.4 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_18355 -1.4 -6.8 DNA-binding protein compare
PS417_05535 -1.4 -1.6 Fis family transcriptional regulator compare
PS417_08540 -1.4 -2.3 RNA helicase compare
PS417_09600 -1.4 -4.0 glycosyl transferase family 1 compare
PS417_04385 -1.3 -2.0 organic solvent ABC transporter substrate-binding protein compare
PS417_16360 -1.3 -3.3 histidine kinase compare
PS417_01600 -1.3 -3.8 peptidase M23 compare
PS417_05975 -1.3 -0.8 chemotaxis protein CheW compare
PS417_27135 -1.3 -0.8 glutamine synthetase compare
PS417_01565 -1.3 -4.0 imidazole glycerol phosphate synthase compare
PS417_05210 -1.3 -3.8 copper oxidase compare
PS417_22065 -1.3 -6.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_22745 -1.3 -5.1 hypothetical protein compare
PS417_07170 -1.3 -3.1 hypothetical protein compare
PS417_03830 -1.3 -6.7 protein disaggregation chaperone compare
PS417_02255 -1.3 -2.0 lipopolysaccharide kinase compare
PS417_04585 -1.3 -0.9 hypothetical protein compare
PS417_23915 -1.2 -2.4 pantoate--beta-alanine ligase compare
PS417_07710 -1.2 -2.5 membrane protein compare
PS417_22400 -1.2 -8.8 7-cyano-7-deazaguanine synthase compare
PS417_09590 -1.2 -3.0 membrane protein compare
PS417_13525 -1.2 -2.0 membrane protein compare
PS417_26175 -1.2 -1.0 sarcosine oxidase subunit gamma compare
PS417_06205 -1.2 -7.2 methionine aminopeptidase compare
PS417_24385 -1.2 -5.3 tRNA (uracil-5-)-methyltransferase compare
PS417_24800 -1.2 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_04365 -1.2 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_15095 -1.2 -3.1 hypothetical protein compare
PS417_03995 -1.2 -4.9 Fe(II)-dependent oxygenase compare
PS417_01580 -1.2 -1.6 imidazole glycerol phosphate synthase compare
PS417_07695 -1.2 -4.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_01795 -1.2 -7.9 glucosyltransferase MdoH compare
PS417_12745 -1.2 -4.8 multidrug transporter compare
PS417_27535 -1.2 -6.6 chemotaxis protein CheY compare
PS417_27295 -1.2 -3.9 hypothetical protein compare
PS417_01920 -1.1 -1.0 ATP-dependent protease subunit HslV compare
PS417_12005 -1.1 -3.7 hypothetical protein compare
PS417_22115 -1.1 -2.3 transcriptional regulator compare
PS417_05595 -1.1 -4.2 ornithine carbamoyltransferase compare
PS417_18690 -1.1 -3.7 aromatic amino acid aminotransferase compare
PS417_09235 -1.1 -1.1 molecular chaperone compare
PS417_23950 -1.1 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_15800 -1.1 -5.5 photosynthetic protein synthase I compare
PS417_12595 -1.1 -2.0 transcriptional regulator compare
PS417_15105 -1.1 -3.9 membrane protein compare
PS417_28265 -1.1 -1.3 pyridoxamine kinase compare
PS417_12695 -1.1 -3.7 mannitol dehydrogenase compare
PS417_04390 -1.1 -1.7 toluene tolerance protein compare
PS417_10265 -1.1 -2.6 peptidase compare
PS417_22405 -1.1 -4.6 7-carboxy-7-deazaguanine synthase compare
PS417_15090 -1.1 -1.6 hypothetical protein compare
PS417_04000 -1.1 -7.1 hypothetical protein compare
PS417_03000 -1.1 -3.4 translation initiation factor Sui1 compare
PS417_24710 -1.1 -5.6 lipoprotein compare
PS417_25710 -1.0 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_23025 -1.0 -3.6 murein transglycosylase compare
PS417_04415 -1.0 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26500 -1.0 -3.6 thioesterase compare
PS417_19415 -1.0 -2.2 allantoinase compare
PS417_25270 -1.0 -1.8 NrdR family transcriptional regulator compare
PS417_09625 -1.0 -3.0 sugar ABC transporter substrate-binding protein compare
PS417_04420 -1.0 -5.3 histidinol dehydrogenase compare
PS417_22740 -1.0 -4.0 imelysin compare
PS417_12740 -1.0 -2.4 secretion protein HlyD compare
PS417_23820 -1.0 -3.5 hypothetical protein compare
PS417_24585 -1.0 -6.7 AMP nucleosidase compare
PS417_22575 -1.0 -4.4 exonuclease I compare
PS417_15075 -1.0 -5.4 NAD-glutamate dehydrogenase compare
PS417_09620 -1.0 -5.3 lipopolysaccharide biosynthesis protein compare
PS417_21000 -0.9 -1.9 CrfX protein compare
PS417_06145 -0.9 -1.1 hypothetical protein compare
PS417_03985 -0.9 -6.2 flavodoxin compare
PS417_09830 -0.9 -2.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_09595 -0.9 -4.6 membrane protein compare
PS417_08580 -0.9 -3.0 histidine kinase compare
PS417_26730 -0.9 -0.6 pyrroline-5-carboxylate reductase compare
PS417_07565 -0.9 -1.8 hypothetical protein compare
PS417_27490 -0.9 -1.1 hypothetical protein compare
PS417_25320 -0.9 -5.0 dTDP-4-dehydrorhamnose reductase compare
PS417_06100 -0.9 -1.6 SAM-dependent methyltransferase compare
PS417_12855 -0.9 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23370 -0.9 -2.8 protoheme IX farnesyltransferase compare
PS417_20880 -0.9 -2.4 GntR family transcriptional regulator compare
PS417_09615 -0.9 -4.1 glycosyl transferase family 1 compare
PS417_12310 -0.9 -3.4 methionine synthase compare
PS417_15100 -0.9 -1.6 BatB protein compare
PS417_13885 -0.9 -2.9 chemotaxis protein CheY compare
PS417_03560 -0.9 -1.0 GTP-binding protein compare
PS417_01575 -0.9 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_08155 -0.9 -0.8 integration host factor subunit beta compare
PS417_22825 -0.8 -3.1 hypothetical protein compare
PS417_26800 -0.8 -3.8 cell division protein FtsX compare
PS417_01560 -0.8 -1.2 imidazoleglycerol-phosphate dehydratase compare
PS417_05105 -0.8 -2.5 membrane protein compare
PS417_01605 -0.8 -0.8 phosphoglycerate mutase compare
PS417_02530 -0.8 -4.6 iron ABC transporter substrate-binding protein compare
PS417_04590 -0.8 -2.8 methyltransferase compare
PS417_20125 -0.8 -2.3 phosphoribosylglycinamide formyltransferase compare
PS417_27935 -0.8 -1.3 type VI secretion protein compare
PS417_22170 -0.8 -2.3 acetyltransferase compare
PS417_27125 -0.8 -4.1 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_02525 -0.8 -5.9 iron ABC transporter permease compare
PS417_15110 -0.8 -4.3 protein BatD compare
PS417_06200 -0.8 -3.3 protein-PII uridylyltransferase compare
PS417_19350 -0.8 -2.8 GTP cyclohydrolase compare
PS417_01790 -0.8 -3.6 glucan biosynthesis protein G compare
PS417_02270 -0.8 -1.5 carbamoyltransferase compare
PS417_13165 -0.8 -1.8 peroxidase compare
PS417_18885 -0.8 -1.5 GntR family transcriptional regulator compare
PS417_04475 -0.8 -2.2 hypothetical protein compare
PS417_11930 -0.8 -3.5 hypothetical protein compare
PS417_24415 -0.8 -3.0 siderophore-interacting protein compare
PS417_03935 -0.8 -2.5 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_02510 -0.8 -2.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_15540 -0.8 -1.3 NUDIX hydrolase compare
PS417_24780 -0.8 -5.0 peptidase C13 compare
PS417_06530 -0.8 -1.8 membrane protein compare
PS417_27245 -0.8 -1.5 aminotransferase DegT compare
PS417_16160 -0.8 -1.8 ABC transporter substrate-binding protein compare
PS417_19995 -0.8 -3.9 Long-chain fatty acid transport protein compare
PS417_14890 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_03260 -0.7 -0.8 5S ribosomal RNA compare
PS417_25975 -0.7 -4.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_00385 -0.7 -1.0 Fur family transcriptional regulator compare
PS417_27505 -0.7 -2.7 transcriptional regulator compare
PS417_14085 -0.7 -3.1 hypothetical protein compare
PS417_19480 -0.7 -3.5 aminopeptidase compare
PS417_24115 -0.7 -1.6 hypothetical protein compare
PS417_23825 -0.7 -3.5 penicillin-binding protein compare
PS417_09150 -0.7 -1.3 energy transducer TonB compare
PS417_25720 -0.7 -3.1 anthranilate synthase component II compare
PS417_21655 -0.7 -0.9 aspartate kinase compare
PS417_15805 -0.7 -1.3 transporter compare
PS417_07165 -0.7 -2.7 dihydrodipicolinate synthase compare
PS417_27915 -0.7 -3.2 type VI secretion system protein ImpM compare
PS417_01855 -0.7 -1.0 phosphoribosyl-AMP cyclohydrolase compare


Specific Phenotypes

For 16 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms