Experiment set32S571 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_28070 -6.2 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_14045 -5.6 -5.4 alkyl hydroperoxide reductase compare
PS417_00665 -5.2 -6.9 RND transporter compare
PS417_06770 -4.9 -8.2 multidrug transporter compare
PS417_00650 -4.9 -1.8 LysR family transcriptional regulator compare
PS417_00660 -4.8 -4.7 DSBA oxidoreductase compare
PS417_23380 -4.4 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_27835 -4.0 -7.9 endoribonuclease compare
PS417_28080 -3.9 -13.8 phosphate ABC transporter permease compare
PS417_06775 -3.9 -9.2 antibiotic transporter compare
PS417_27865 -3.7 -3.0 LysR family transcriptional regulator compare
PS417_28085 -3.5 -12.4 phosphate-binding protein compare
PS417_07615 -3.5 -8.4 TetR family transcriptional regulator compare
PS417_02225 -3.3 -3.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_00655 -3.3 -5.3 DSBA oxidoreductase compare
PS417_05590 -3.3 -9.8 iron ABC transporter ATP-binding protein compare
PS417_10645 -3.3 -9.7 magnesium ABC transporter ATPase compare
PS417_13510 -3.2 -1.7 polyketide cyclase compare
PS417_04385 -3.1 -2.1 organic solvent ABC transporter substrate-binding protein compare
PS417_00345 -3.0 -3.4 copper-binding protein compare
PS417_22735 -3.0 -14.0 thiol oxidoreductase compare
PS417_27605 -3.0 -5.1 hypothetical protein compare
PS417_23385 -3.0 -9.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_22935 -2.8 -3.9 hypothetical protein compare
PS417_23375 -2.8 -2.5 cytochrome C oxidase compare
PS417_22195 -2.8 -4.4 peptidase compare
PS417_01915 -2.7 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27300 -2.6 -1.4 cell division protein ZapA compare
PS417_26985 -2.6 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_15095 -2.4 -2.7 hypothetical protein compare
PS417_28075 -2.3 -5.0 phosphate ABC transporter permease compare
PS417_26990 -2.3 -1.2 RNA pyrophosphohydrolase compare
PS417_21430 -2.3 -2.0 3-oxoacyl-ACP synthase compare
PS417_23390 -2.3 -7.7 ubiquinol oxidase subunit II compare
PS417_01955 -2.3 -10.4 peptidase compare
PS417_04380 -2.2 -1.4 ABC transporter permease compare
PS417_02485 -2.2 -3.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_10720 -2.2 -6.8 chemotaxis protein CheY compare
PS417_17215 -2.1 -2.6 peptidylprolyl isomerase compare
PS417_02280 -2.1 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_26730 -2.1 -1.1 pyrroline-5-carboxylate reductase compare
PS417_06205 -2.1 -8.9 methionine aminopeptidase compare
PS417_00045 -2.1 -2.2 glycerol acyltransferase compare
PS417_05975 -2.1 -1.1 chemotaxis protein CheW compare
PS417_27610 -2.1 -5.6 hypothetical protein compare
PS417_04590 -2.0 -5.0 methyltransferase compare
PS417_28050 -2.0 -1.7 hypothetical protein compare
PS417_02555 -2.0 -9.2 exoribonuclease R compare
PS417_16370 -2.0 -10.9 chemotaxis protein CheY compare
PS417_06365 -1.9 -7.9 RNA polymerase sigma factor compare
PS417_16360 -1.9 -4.5 histidine kinase compare
PS417_02255 -1.9 -1.9 lipopolysaccharide kinase compare
PS417_00370 -1.9 -1.4 hypothetical protein compare
PS417_27870 -1.9 -2.6 ATP-dependent DNA helicase RecG compare
PS417_23775 -1.9 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_03990 -1.9 -12.9 ligand-gated channel protein compare
PS417_06375 -1.8 -0.6 deoxycytidine triphosphate deaminase compare
PS417_12745 -1.8 -6.9 multidrug transporter compare
PS417_27595 -1.8 -2.2 recombinase XerC compare
PS417_06680 -1.8 -5.1 nuclease PIN compare
PS417_05365 -1.8 -2.0 FAD-binding protein compare
PS417_18370 -1.8 -2.5 hypothetical protein compare
PS417_24385 -1.8 -6.4 tRNA (uracil-5-)-methyltransferase compare
PS417_12740 -1.7 -3.3 secretion protein HlyD compare
PS417_01185 -1.7 -5.7 ribosomal protein S6 modification protein compare
PS417_27585 -1.7 -2.1 diaminopimelate epimerase compare
PS417_23025 -1.7 -4.7 murein transglycosylase compare
PS417_05210 -1.7 -6.1 copper oxidase compare
PS417_22065 -1.7 -6.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_07695 -1.7 -6.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_19350 -1.6 -4.1 GTP cyclohydrolase compare
PS417_07170 -1.6 -4.1 hypothetical protein compare
PS417_27640 -1.6 -1.5 TetR family transcriptional regulator compare
PS417_12750 -1.6 -5.9 acriflavine resistance protein B compare
PS417_03830 -1.6 -6.8 protein disaggregation chaperone compare
PS417_18355 -1.6 -6.5 DNA-binding protein compare
PS417_12695 -1.6 -6.3 mannitol dehydrogenase compare
PS417_01855 -1.5 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_27290 -1.5 -2.1 hypothetical protein compare
PS417_24615 -1.5 -1.7 hypothetical protein compare
PS417_07710 -1.5 -2.5 membrane protein compare
PS417_01575 -1.5 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_14065 -1.5 -5.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_04390 -1.4 -2.7 toluene tolerance protein compare
PS417_13205 -1.4 -2.1 isochorismate-pyruvate lyase compare
PS417_22405 -1.4 -8.1 7-carboxy-7-deazaguanine synthase compare
PS417_25320 -1.4 -6.8 dTDP-4-dehydrorhamnose reductase compare
PS417_27295 -1.4 -5.5 hypothetical protein compare
PS417_03300 -1.4 -2.8 alanine acetyltransferase compare
PS417_15105 -1.4 -4.5 membrane protein compare
PS417_09830 -1.3 -4.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_07140 -1.3 -1.6 peptidase M48 compare
PS417_12310 -1.3 -4.6 methionine synthase compare
PS417_27135 -1.3 -0.8 glutamine synthetase compare
PS417_19415 -1.3 -2.1 allantoinase compare
PS417_05595 -1.3 -5.0 ornithine carbamoyltransferase compare
PS417_15110 -1.3 -4.1 protein BatD compare
PS417_24265 -1.3 -3.8 ABC transporter ATP-binding protein compare
PS417_16490 -1.3 -1.0 cell division protein FtsK compare
PS417_03995 -1.3 -4.7 Fe(II)-dependent oxygenase compare
PS417_23250 -1.3 -4.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_01795 -1.2 -8.2 glucosyltransferase MdoH compare
PS417_18545 -1.2 -2.7 cell division protein compare
PS417_03985 -1.2 -6.6 flavodoxin compare
PS417_01620 -1.2 -3.1 preprotein translocase subunit SecB compare
PS417_28265 -1.2 -1.4 pyridoxamine kinase compare
PS417_23370 -1.2 -3.2 protoheme IX farnesyltransferase compare
PS417_21655 -1.2 -1.3 aspartate kinase compare
PS417_08155 -1.2 -1.1 integration host factor subunit beta compare
PS417_02270 -1.2 -2.7 carbamoyltransferase compare
PS417_02975 -1.2 -2.7 3-dehydroquinate dehydratase compare
PS417_24800 -1.2 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_12755 -1.2 -2.6 RND transporter compare
PS417_12355 -1.2 -1.9 magnesium chelatase compare
PS417_01600 -1.1 -4.4 peptidase M23 compare
PS417_01995 -1.1 -1.9 hypothetical protein compare
PS417_03935 -1.1 -1.9 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_13855 -1.1 -1.3 acetyl-CoA acetyltransferase compare
PS417_24780 -1.1 -6.7 peptidase C13 compare
PS417_04420 -1.1 -6.1 histidinol dehydrogenase compare
PS417_22740 -1.1 -4.1 imelysin compare
PS417_08220 -1.1 -1.0 epimerase compare
PS417_01300 -1.1 -3.2 thioesterase compare
PS417_15075 -1.1 -5.6 NAD-glutamate dehydrogenase compare
PS417_23915 -1.1 -3.4 pantoate--beta-alanine ligase compare
PS417_22400 -1.1 -5.1 7-cyano-7-deazaguanine synthase compare
PS417_07165 -1.1 -2.3 dihydrodipicolinate synthase compare
PS417_27105 -1.1 -3.6 spermidine/putrescine ABC transporter permease compare
PS417_04000 -1.1 -6.5 hypothetical protein compare
PS417_12595 -1.1 -1.5 transcriptional regulator compare
PS417_01790 -1.1 -5.6 glucan biosynthesis protein G compare
PS417_09590 -1.1 -4.7 membrane protein compare
PS417_04270 -1.1 -6.2 ribonuclease G compare
PS417_04475 -1.1 -3.2 hypothetical protein compare
PS417_22745 -1.1 -4.2 hypothetical protein compare
PS417_01115 -1.1 -1.4 serine acetyltransferase compare
PS417_15325 -1.1 -1.3 type VI secretion protein compare
PS417_24710 -1.1 -5.3 lipoprotein compare
PS417_21425 -1.0 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_28350 -1.0 -4.3 fatty acid methyltransferase compare
PS417_10265 -1.0 -2.3 peptidase compare
PS417_23950 -1.0 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_24585 -1.0 -6.5 AMP nucleosidase compare
PS417_22775 -1.0 -5.8 histidine kinase compare
PS417_26500 -1.0 -4.5 thioesterase compare
PS417_01715 -1.0 -1.2 hypothetical protein compare
PS417_22825 -1.0 -4.2 hypothetical protein compare
PS417_02525 -1.0 -5.9 iron ABC transporter permease compare
PS417_28250 -1.0 -6.8 cell wall assembly protein compare
PS417_23820 -1.0 -4.3 hypothetical protein compare
PS417_09620 -1.0 -5.5 lipopolysaccharide biosynthesis protein compare
PS417_25270 -1.0 -1.7 NrdR family transcriptional regulator compare
PS417_22795 -1.0 -1.2 exclusion suppressor FxsA compare
PS417_26260 -1.0 -1.1 hypothetical protein compare
PS417_09625 -0.9 -2.7 sugar ABC transporter substrate-binding protein compare
PS417_02460 -0.9 -4.5 epoxyqueuosine reductase compare
PS417_12540 -0.9 -1.8 hypothetical protein compare
PS417_06200 -0.9 -3.4 protein-PII uridylyltransferase compare
PS417_05105 -0.9 -3.1 membrane protein compare
PS417_09600 -0.9 -2.5 glycosyl transferase family 1 compare
PS417_27535 -0.9 -5.5 chemotaxis protein CheY compare
PS417_26800 -0.9 -4.0 cell division protein FtsX compare
PS417_09615 -0.9 -2.9 glycosyl transferase family 1 compare
PS417_26070 -0.9 -3.9 amino acid ABC transporter substrate-binding protein compare
PS417_24115 -0.9 -0.9 hypothetical protein compare
PS417_25700 -0.9 -1.3 cyclic AMP receptor protein compare
PS417_07515 -0.9 -5.9 aconitate hydratase compare
PS417_24705 -0.9 -1.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_04440 -0.9 -1.9 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_26390 -0.9 -1.6 acyltransferase compare
PS417_02175 -0.9 -2.8 transcriptional regulator compare
PS417_23095 -0.9 -1.0 exodeoxyribonuclease compare
PS417_14040 -0.9 -4.9 alkyl hydroperoxide reductase compare
PS417_19560 -0.9 -5.0 amino acid ABC transporter substrate-binding protein compare
PS417_08130 -0.9 -1.6 aspartate aminotransferase compare
PS417_24885 -0.8 -3.6 transcriptional regulator compare
PS417_25975 -0.8 -4.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_22170 -0.8 -1.3 acetyltransferase compare
PS417_27785 -0.8 -4.2 phosphoglucomutase compare
PS417_27125 -0.8 -3.9 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_25720 -0.8 -3.5 anthranilate synthase component II compare
PS417_11945 -0.8 -1.2 hypothetical protein compare
PS417_22210 -0.8 -1.1 AraC family transcriptional regulator compare
PS417_26775 -0.8 -4.8 thiazole synthase compare
PS417_19720 -0.8 -1.4 DNA-binding protein compare
PS417_24415 -0.8 -3.4 siderophore-interacting protein compare
PS417_07820 -0.8 -1.3 transposase compare
PS417_26805 -0.8 -0.9 cell division protein FtsE compare
PS417_05965 -0.8 -1.9 chemotaxis protein CheW compare
PS417_17160 -0.8 -1.7 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_00385 -0.8 -1.0 Fur family transcriptional regulator compare
PS417_15135 -0.8 -1.2 hypothetical protein compare
PS417_25710 -0.8 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_12805 -0.8 -4.8 glycogen branching protein compare
PS417_04415 -0.8 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_24570 -0.8 -2.3 AsnC family transcriptional regulator compare
PS417_21480 -0.8 -0.7 23S rRNA pseudouridylate synthase compare
PS417_20130 -0.8 -5.4 dehydrogenase compare
PS417_22575 -0.8 -4.5 exonuclease I compare
PS417_00440 -0.8 -2.8 N-acetylmuramoyl-L-alanine amidase compare


Specific Phenotypes

For 20 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms