Experiment set32S568 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_00045 -6.5 -2.1 glycerol acyltransferase compare
PS417_23915 -5.7 -3.7 pantoate--beta-alanine ligase compare
PS417_28070 -5.6 -7.4 phosphate ABC transporter ATP-binding protein compare
PS417_28080 -5.6 -15.4 phosphate ABC transporter permease compare
PS417_28085 -5.0 -9.5 phosphate-binding protein compare
PS417_02485 -4.8 -5.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05365 -4.7 -2.9 FAD-binding protein compare
PS417_27865 -4.3 -4.4 LysR family transcriptional regulator compare
PS417_28075 -4.2 -5.3 phosphate ABC transporter permease compare
PS417_28050 -4.1 -2.9 hypothetical protein compare
PS417_06335 -4.1 -5.2 S-formylglutathione hydrolase compare
PS417_06775 -4.0 -7.5 antibiotic transporter compare
PS417_06770 -3.9 -8.4 multidrug transporter compare
PS417_23380 -3.8 -3.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_00660 -3.8 -4.1 DSBA oxidoreductase compare
PS417_10645 -3.7 -10.3 magnesium ABC transporter ATPase compare
PS417_23385 -3.6 -7.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_21430 -3.4 -2.3 3-oxoacyl-ACP synthase compare
PS417_04385 -3.3 -2.3 organic solvent ABC transporter substrate-binding protein compare
PS417_27870 -3.3 -3.2 ATP-dependent DNA helicase RecG compare
PS417_02280 -3.2 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_06680 -3.2 -5.7 nuclease PIN compare
PS417_00650 -3.1 -1.4 LysR family transcriptional regulator compare
PS417_02255 -2.9 -4.3 lipopolysaccharide kinase compare
PS417_23390 -2.9 -8.3 ubiquinol oxidase subunit II compare
PS417_00665 -2.9 -9.7 RND transporter compare
PS417_22935 -2.9 -3.7 hypothetical protein compare
PS417_04365 -2.7 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01955 -2.7 -10.1 peptidase compare
PS417_26500 -2.6 -4.3 thioesterase compare
PS417_25405 -2.6 -14.0 catalase compare
PS417_11460 -2.6 -7.3 divalent metal cation transporter MntH compare
PS417_04380 -2.5 -1.4 ABC transporter permease compare
PS417_00655 -2.4 -5.9 DSBA oxidoreductase compare
PS417_21480 -2.4 -1.7 23S rRNA pseudouridylate synthase compare
PS417_02555 -2.4 -10.8 exoribonuclease R compare
PS417_05590 -2.2 -10.0 iron ABC transporter ATP-binding protein compare
PS417_26730 -2.2 -1.0 pyrroline-5-carboxylate reductase compare
PS417_26985 -2.1 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23375 -2.1 -2.3 cytochrome C oxidase compare
PS417_24800 -2.1 -5.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_02270 -2.1 -3.2 carbamoyltransferase compare
PS417_01560 -2.1 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_14045 -2.0 -5.0 alkyl hydroperoxide reductase compare
PS417_08125 -2.0 -0.6 prephenate dehydratase compare
PS417_06375 -2.0 -0.6 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.0 -0.6 formyltetrahydrofolate deformylase compare
PS417_08170 -2.0 -8.9 capsular biosynthesis protein compare
PS417_09600 -1.9 -4.0 glycosyl transferase family 1 compare
PS417_09590 -1.9 -6.9 membrane protein compare
PS417_02975 -1.9 -6.3 3-dehydroquinate dehydratase compare
PS417_26775 -1.9 -8.6 thiazole synthase compare
PS417_22735 -1.8 -10.3 thiol oxidoreductase compare
PS417_01850 -1.8 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01855 -1.8 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_05815 -1.8 -3.8 recombinase RecA compare
PS417_27605 -1.8 -7.0 hypothetical protein compare
PS417_01920 -1.8 -1.1 ATP-dependent protease subunit HslV compare
PS417_23370 -1.7 -2.7 protoheme IX farnesyltransferase compare
PS417_15800 -1.7 -6.0 photosynthetic protein synthase I compare
PS417_07710 -1.7 -3.0 membrane protein compare
PS417_01605 -1.7 -1.4 phosphoglycerate mutase compare
PS417_20130 -1.7 -10.9 dehydrogenase compare
PS417_03260 -1.6 -1.2 5S ribosomal RNA compare
PS417_03560 -1.6 -1.4 GTP-binding protein compare
PS417_22745 -1.6 -5.8 hypothetical protein compare
PS417_23950 -1.6 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_11705 -1.6 -6.0 cyclic peptide transporter compare
PS417_13510 -1.6 -1.2 polyketide cyclase compare
PS417_24600 -1.5 -7.3 hydrogenase compare
PS417_24605 -1.5 -2.6 thiamine-phosphate pyrophosphorylase compare
PS417_13870 -1.5 -4.1 hypothetical protein compare
PS417_27610 -1.5 -5.7 hypothetical protein compare
PS417_20025 -1.5 -1.9 alpha-ribazole phosphatase compare
PS417_21625 -1.5 -1.2 DNA-binding protein compare
PS417_04420 -1.5 -7.6 histidinol dehydrogenase compare
PS417_27585 -1.5 -1.8 diaminopimelate epimerase compare
PS417_03830 -1.5 -7.0 protein disaggregation chaperone compare
PS417_15540 -1.4 -2.0 NUDIX hydrolase compare
PS417_12655 -1.4 -6.1 methionine aminopeptidase compare
PS417_01580 -1.4 -1.6 imidazole glycerol phosphate synthase compare
PS417_27315 -1.4 -1.5 hypothetical protein compare
PS417_08545 -1.4 -2.1 aromatic ring-opening dioxygenase LigB compare
PS417_09470 -1.4 -1.3 hypothetical protein compare
PS417_08410 -1.4 -2.6 hypothetical protein compare
PS417_19955 -1.4 -1.7 hypothetical protein compare
PS417_27295 -1.4 -6.0 hypothetical protein compare
PS417_27795 -1.4 -0.6 orotate phosphoribosyltransferase compare
PS417_06330 -1.3 -3.1 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_27435 -1.3 -4.6 polyphosphate kinase compare
PS417_22450 -1.3 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_19940 -1.3 -8.6 membrane protein compare
PS417_06685 -1.3 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_06735 -1.3 -2.7 3-oxoadipate enol-lactonase compare
PS417_12695 -1.3 -5.5 mannitol dehydrogenase compare
PS417_15075 -1.3 -6.0 NAD-glutamate dehydrogenase compare
PS417_25730 -1.3 -3.9 phosphoglycolate phosphatase compare
PS417_15095 -1.3 -2.3 hypothetical protein compare
PS417_07640 -1.3 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_19350 -1.3 -3.5 GTP cyclohydrolase compare
PS417_05210 -1.2 -5.6 copper oxidase compare
PS417_22690 -1.2 -2.9 phosphogluconate dehydratase compare
PS417_23810 -1.2 -6.8 acetolactate synthase 3 catalytic subunit compare
PS417_19275 -1.2 -1.2 hypothetical protein compare
PS417_24675 -1.2 -2.7 lipoyl synthase compare
PS417_16980 -1.2 -4.1 exonuclease III compare
PS417_09625 -1.2 -2.4 sugar ABC transporter substrate-binding protein compare
PS417_03000 -1.2 -3.5 translation initiation factor Sui1 compare
PS417_00475 -1.2 -3.6 membrane protein compare
PS417_22700 -1.2 -2.7 RNA polymerase subunit sigma-24 compare
PS417_14040 -1.2 -6.4 alkyl hydroperoxide reductase compare
PS417_05595 -1.2 -4.9 ornithine carbamoyltransferase compare
PS417_11945 -1.2 -2.7 hypothetical protein compare
PS417_03995 -1.2 -4.5 Fe(II)-dependent oxygenase compare
PS417_08685 -1.2 -1.3 flagellar hook-length control protein FliK compare
PS417_09615 -1.2 -4.9 glycosyl transferase family 1 compare
PS417_03990 -1.2 -7.8 ligand-gated channel protein compare
PS417_07170 -1.2 -2.9 hypothetical protein compare
PS417_02510 -1.1 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22195 -1.1 -3.2 peptidase compare
PS417_22740 -1.1 -6.1 imelysin compare
PS417_11940 -1.1 -8.1 TonB-dependent receptor compare
PS417_25400 -1.1 -5.7 bacterioferritin compare
PS417_23775 -1.1 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_22270 -1.1 -3.7 hypothetical protein compare
PS417_21360 -1.1 -1.0 termination factor Rho compare
PS417_26990 -1.1 -0.6 RNA pyrophosphohydrolase compare
PS417_08540 -1.1 -1.8 RNA helicase compare
PS417_12855 -1.1 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01565 -1.1 -3.0 imidazole glycerol phosphate synthase compare
PS417_26335 -1.0 -2.0 BetI family transcriptional regulator compare
PS417_09865 -1.0 -1.9 hypothetical protein compare
PS417_06500 -1.0 -1.5 hypothetical protein compare
PS417_15805 -1.0 -1.5 transporter compare
PS417_15090 -1.0 -1.7 hypothetical protein compare
PS417_11925 -1.0 -2.0 hypothetical protein compare
PS417_06730 -1.0 -1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_19705 -1.0 -2.3 flagellar biosynthesis regulator FlhF compare
PS417_18425 -1.0 -1.2 sporulation protein compare
PS417_07575 -1.0 -3.0 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_27290 -1.0 -1.7 hypothetical protein compare
PS417_27515 -1.0 -3.1 heme biosynthesis protein HemY compare
PS417_28515 -1.0 -1.7 16S rRNA methyltransferase compare
PS417_18445 -1.0 -2.5 glycerol-3-phosphatase compare
PS417_06365 -1.0 -4.9 RNA polymerase sigma factor compare
PS417_27505 -1.0 -3.1 transcriptional regulator compare
PS417_23545 -1.0 -1.2 gamma-glutamyl kinase compare
PS417_00175 -1.0 -1.1 CigR compare
PS417_03935 -1.0 -2.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_01550 -1.0 -2.9 cell envelope biogenesis protein AsmA compare
PS417_27640 -1.0 -1.0 TetR family transcriptional regulator compare
PS417_16915 -1.0 -3.4 hemolysin D compare
PS417_15970 -1.0 -3.2 hypothetical protein compare
PS417_01915 -1.0 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02225 -1.0 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_19850 -1.0 -4.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_27195 -0.9 -0.7 N-acetylglutamate synthase compare
PS417_21695 -0.9 -2.1 succinylglutamate-semialdehyde dehydrogenase compare
PS417_18400 -0.9 -2.7 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_07165 -0.9 -2.8 dihydrodipicolinate synthase compare
PS417_09620 -0.9 -5.7 lipopolysaccharide biosynthesis protein compare
PS417_21320 -0.9 -3.4 transcriptional regulator compare
PS417_09595 -0.9 -4.1 membrane protein compare
PS417_27425 -0.9 -4.6 exopolyphosphatase compare
PS417_23900 -0.9 -4.4 poly(A) polymerase compare
PS417_07565 -0.9 -1.8 hypothetical protein compare
PS417_00185 -0.9 -2.1 tryptophan synthase subunit beta compare
PS417_02475 -0.9 -1.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_04390 -0.9 -2.0 toluene tolerance protein compare
PS417_04340 -0.9 -2.9 ribosome hibernation promoting factor HPF compare
PS417_01270 -0.9 -1.3 iron ABC transporter substrate-binding protein compare
PS417_00440 -0.9 -3.8 N-acetylmuramoyl-L-alanine amidase compare
PS417_09210 -0.9 -1.3 TetR family transcriptional regulator compare
PS417_01575 -0.9 -1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04375 -0.9 -1.0 ABC transporter ATP-binding protein compare
PS417_27140 -0.9 -3.0 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_16555 -0.9 -1.2 cupin compare
PS417_06895 -0.9 -2.7 DNA-binding protein compare
PS417_00030 -0.9 -2.4 hypothetical protein compare
PS417_24265 -0.9 -2.7 ABC transporter ATP-binding protein compare
PS417_11360 -0.9 -1.7 energy transducer TonB compare
PS417_24570 -0.8 -3.2 AsnC family transcriptional regulator compare
PS417_07140 -0.8 -2.0 peptidase M48 compare
PS417_10245 -0.8 -1.5 hypothetical protein compare
PS417_23805 -0.8 -1.8 acetolactate synthase 3 regulatory subunit compare
PS417_26260 -0.8 -1.4 hypothetical protein compare
PS417_06530 -0.8 -1.7 membrane protein compare
PS417_04960 -0.8 -1.5 hypothetical protein compare
PS417_16310 -0.8 -2.5 membrane protein compare
PS417_26420 -0.8 -1.2 hypothetical protein compare
PS417_06600 -0.8 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_22715 -0.8 -2.5 heme oxygenase compare
PS417_03625 -0.8 -3.9 lipid A 3-O-deacylase compare
PS417_14835 -0.8 -2.0 amidase compare
PS417_06145 -0.8 -0.9 hypothetical protein compare
PS417_04650 -0.8 -0.3 D-alanine--D-alanine ligase compare
PS417_26365 -0.8 -1.8 EmrB/QacA subfamily drug resistance transporter compare
PS417_16475 -0.8 -1.7 camphor resistance protein CrcB compare
PS417_25825 -0.8 -2.4 sulfurtransferase compare
PS417_19755 -0.8 -1.4 flagellar motor switch protein FliM compare


Specific Phenotypes

For 15 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms