Experiment set32S568 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; solid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_20785 +1.8 6.6 transcriptional regulator compare
PS417_20520 +1.7 1.1 3-phosphoglycerate kinase compare
PS417_08245 +1.5 2.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_07545 +1.4 9.6 ABC transporter ATP-binding protein compare
PS417_02560 +1.4 2.7 23S rRNA methyltransferase compare
PS417_08190 +1.3 10.3 membrane protein compare
PS417_08195 +1.2 6.3 hypothetical protein compare
PS417_14065 +1.2 6.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13795 +1.2 6.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_08220 +1.2 1.9 epimerase compare
PS417_19335 +1.1 4.5 isochorismatase compare
PS417_08150 +1.1 3.3 hypothetical protein compare
PS417_13820 +1.1 8.6 UDP-glucose 6-dehydrogenase compare
PS417_20650 +1.1 6.8 hypothetical protein compare
PS417_27875 +1.1 6.5 histidine kinase compare
PS417_23475 +1.0 2.3 hypothetical protein compare
PS417_08205 +1.0 3.1 acetyltransferase compare
PS417_22060 +1.0 1.9 hypothetical protein compare
PS417_27075 +1.0 2.8 thiol-disulfide isomerase compare
PS417_13790 +1.0 3.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_08185 +1.0 3.3 glycosyl transferase compare
PS417_02160 +1.0 1.9 hypothetical protein compare
PS417_24835 +0.9 5.2 hypothetical protein compare
PS417_15885 +0.9 2.0 GCN5 family acetyltransferase compare
PS417_09545 +0.9 1.9 aldehyde-activating protein compare
PS417_08200 +0.9 1.9 hypothetical protein compare
PS417_12910 +0.9 2.6 alanine racemase compare
PS417_13805 +0.9 6.1 4-amino-4-deoxy-L-arabinose transferase compare
PS417_04860 +0.9 5.8 ATPase compare
PS417_02370 +0.9 2.0 ADP-ribose pyrophosphatase compare
PS417_27555 +0.9 1.7 DNA-binding protein compare
PS417_17240 +0.9 2.9 trigger factor compare
PS417_04915 +0.9 1.8 glutamine ABC transporter ATP-binding protein compare
PS417_25645 +0.9 4.4 peptidase M23 compare
PS417_15745 +0.9 2.5 lipid carrier protein compare
PS417_17070 +0.9 1.3 RNA polymerase subunit sigma-24 compare
PS417_16640 +0.9 1.8 toxin compare
PS417_27040 +0.9 3.0 3-phosphoglycerate dehydrogenase compare
PS417_06780 +0.9 3.5 TetR family transcriptional regulator compare
PS417_20705 +0.9 2.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_22705 +0.8 2.8 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_09245 +0.8 1.8 recombinase RdgC compare
PS417_15470 +0.8 3.4 saccharopine dehydrogenase compare
PS417_08225 +0.8 3.9 acetolactate synthase compare
PS417_23315 +0.8 1.4 transcriptional regulator compare
PS417_01115 +0.8 2.0 serine acetyltransferase compare
PS417_05535 +0.8 1.1 Fis family transcriptional regulator compare
PS417_13800 +0.8 1.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_09045 +0.8 2.7 histidine kinase compare
PS417_19360 +0.8 1.1 hypothetical protein compare
PS417_07275 +0.8 1.7 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_18760 +0.8 2.6 hypothetical protein compare
PS417_05090 +0.8 4.5 ferric citrate outer membrane transporter (fecA) (from data) compare
PS417_19620 +0.8 1.4 hypothetical protein compare
PS417_01735 +0.8 1.8 ABC transporter permease compare
PS417_06945 +0.8 1.2 membrane protein compare
PS417_17785 +0.7 5.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_22480 +0.7 6.4 ferritin compare
PS417_14755 +0.7 2.7 UV damage repair endonuclease UvdE compare
PS417_08090 +0.7 0.6 3-oxoacyl-ACP reductase compare
PS417_23360 +0.7 1.1 hypothetical protein compare
PS417_03385 +0.7 1.4 flavin reductase compare
PS417_20915 +0.7 1.7 hypothetical protein compare
PS417_19825 +0.7 6.7 ATPase AAA compare
PS417_17630 +0.7 1.7 RNA polymerase sigma factor compare
PS417_20660 +0.7 4.5 hypothetical protein compare
PS417_08940 +0.7 1.9 thioesterase compare
PS417_12765 +0.7 4.3 oxidoreductase compare
PS417_16810 +0.7 2.5 acyl-CoA dehydrogenase compare
PS417_01795 +0.7 5.6 glucosyltransferase MdoH compare
PS417_26295 +0.7 3.0 gamma-butyrobetaine dioxygenase compare
PS417_13065 +0.7 2.1 UDP pyrophosphate phosphatase compare
PS417_13735 +0.7 1.2 hypothetical protein compare
PS417_25120 +0.7 2.7 capsular biosynthesis protein compare
PS417_27025 +0.7 2.6 DNA-binding protein compare
PS417_15935 +0.7 1.5 Rrf2 family transcriptional regulator compare
PS417_20340 +0.7 1.5 hypothetical protein compare
PS417_13395 +0.6 4.1 phosphoglucomutase compare
PS417_19800 +0.6 1.2 flagellar motor switch protein FliG compare
PS417_22375 +0.6 0.9 cold-shock protein compare
PS417_07120 +0.6 2.4 RNA polymerase sigma-H factor compare
PS417_21465 +0.6 1.7 septum formation inhibitor Maf compare
PS417_12035 +0.6 2.5 dihydroxyacetone kinase compare
PS417_07595 +0.6 2.2 PasA protein compare
PS417_20840 +0.6 2.0 hypothetical protein compare
PS417_20700 +0.6 3.9 cbb3-type cytochrome c oxidase subunit I compare
PS417_00480 +0.6 1.5 hypothetical protein compare
PS417_27750 +0.6 1.9 transcriptional regulator compare
PS417_22050 +0.6 2.4 ribonuclease BN compare
PS417_05095 +0.6 2.2 membrane protein compare
PS417_17830 +0.6 1.2 4-hydroxyphenylacetate isomerase compare
PS417_17780 +0.6 0.9 Ais protein compare
PS417_10385 +0.6 2.5 peroxiredoxin compare
PS417_01380 +0.6 2.4 nucleotide cyclase compare
PS417_13455 +0.6 1.6 alkaline proteinase inhibitor compare
PS417_09420 +0.6 1.6 LysR family transcriptional regulator compare
PS417_19945 +0.6 1.8 MarR family transcriptional regulator compare
PS417_25315 +0.6 2.4 membrane protein compare
PS417_12740 +0.6 1.5 secretion protein HlyD compare
PS417_13590 +0.6 1.5 histidine kinase compare
PS417_19295 +0.6 3.8 hypothetical protein compare
PS417_28220 +0.6 1.5 LysR family transcriptional regulator compare
PS417_11880 +0.6 1.2 oxidoreductase compare
PS417_11065 +0.6 2.1 S-transferase compare
PS417_28405 +0.6 2.1 hypothetical protein compare
PS417_24460 +0.5 1.1 hypothetical protein compare
PS417_21700 +0.5 2.5 arginine N-succinyltransferase compare
PS417_24355 +0.5 1.2 MFS transporter compare
PS417_13335 +0.5 1.2 aldo/keto reductase compare
PS417_08830 +0.5 2.9 membrane protein compare
PS417_02805 +0.5 1.1 urease subunit gamma compare
PS417_08230 +0.5 1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_27360 +0.5 1.4 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_07360 +0.5 2.5 ArtI protein compare
PS417_03475 +0.5 1.9 type III secretion protein compare
PS417_22300 +0.5 1.0 LTXXQ domain protein compare
PS417_14240 +0.5 2.1 isochorismatase compare
PS417_26850 +0.5 0.6 twin-arginine translocation pathway signal protein compare
PS417_00195 +0.5 0.9 hypothetical protein compare
PS417_17945 +0.5 0.6 hypothetical protein compare
PS417_01095 +0.5 0.9 amino acid ABC transporter ATP-binding protein compare
PS417_18160 +0.5 1.2 YeeE/YedE compare
PS417_14430 +0.5 2.1 AraC family transcriptional regulator compare
PS417_21760 +0.5 1.0 hypothetical protein compare
PS417_08025 +0.5 0.7 acetylornithine aminotransferase compare
PS417_13135 +0.5 1.2 hypothetical protein compare
PS417_27155 +0.5 1.0 aliphatic sulfonates transport ATP-binding subunit compare
PS417_22945 +0.5 0.8 phosphoribosylglycinamide formyltransferase compare
PS417_06805 +0.5 1.8 glycerol acyltransferase compare
PS417_12745 +0.5 2.9 multidrug transporter compare
PS417_22520 +0.5 0.8 histidine kinase compare
PS417_20655 +0.5 3.7 group 1 glycosyl transferase compare
PS417_11535 +0.5 1.6 nicotinate phosphoribosyltransferase compare
PS417_09800 +0.5 1.4 cytosine deaminase compare
PS417_17735 +0.5 1.2 LacI family transcriptional regulator compare
PS417_11405 +0.5 2.0 precorrin 6A synthase compare
PS417_06850 +0.5 1.8 methanol dehydrogenase compare
PS417_20875 +0.5 1.5 chromosome segregation protein SMC compare
PS417_06675 +0.5 1.5 ATP-dependent helicase compare
PS417_21475 +0.5 1.6 HAD family hydrolase compare
PS417_00455 +0.5 0.9 hypothetical protein compare
PS417_01790 +0.5 3.1 glucan biosynthesis protein G compare
PS417_17565 +0.5 1.5 branched-chain amino acid aminotransferase compare
PS417_07840 +0.5 1.4 hypothetical protein compare
PS417_16060 +0.5 1.8 protein tolQ compare
PS417_24840 +0.5 1.3 hypothetical protein compare
PS417_25380 +0.5 1.3 hypothetical protein compare
PS417_00845 +0.5 1.1 transcriptional regulator compare
PS417_19065 +0.5 0.7 monooxygenase compare
PS417_17590 +0.5 1.1 ABC transporter substrate-binding protein compare
PS417_17900 +0.5 1.8 transcriptional regulator compare
PS417_08250 +0.5 1.5 competence protein ComEA compare
PS417_20440 +0.5 1.8 integrase compare
PS417_22875 +0.5 1.0 hypothetical protein compare
PS417_28035 +0.5 2.1 transcriptional regulator PhoB compare
PS417_14075 +0.5 1.1 hypothetical protein compare
PS417_08770 +0.5 1.8 hypothetical protein compare
PS417_06105 +0.5 1.4 TetR family transcriptional regulator compare
PS417_01375 +0.5 1.2 hypothetical protein compare
PS417_05905 +0.5 1.2 hypothetical protein compare
PS417_00085 +0.5 0.9 16S rRNA methyltransferase compare
PS417_20670 +0.5 2.9 glycosyl transferase family 2 compare
PS417_17885 +0.5 1.3 moaF compare
PS417_06970 +0.5 1.6 LysR family transcriptional regulator compare
PS417_23930 +0.5 1.1 histidine kinase compare
PS417_15465 +0.5 1.1 carboxynorspermidine decarboxylase compare
PS417_16020 +0.5 1.3 LysR family transcriptional regulator compare
PS417_21125 +0.5 1.7 phosphoadenosine phosphosulfate reductase compare
PS417_11865 +0.5 0.8 xylose isomerase compare
PS417_01040 +0.5 1.5 RND transporter compare
PS417_17635 +0.5 2.0 hemolysin secretion protein D compare
PS417_16815 +0.4 1.4 acyl-CoA dehydrogenase compare
PS417_24165 +0.4 2.2 hypothetical protein compare
PS417_02675 +0.4 0.9 ABC transporter ATP-binding protein compare
PS417_28040 +0.4 2.3 histidine kinase compare
PS417_01200 +0.4 2.3 phosphoesterase compare
PS417_12755 +0.4 1.2 RND transporter compare
PS417_04090 +0.4 1.3 hypothetical protein compare
PS417_03075 +0.4 2.2 hypothetical protein compare
PS417_18485 +0.4 2.0 membrane protein compare
PS417_24655 +0.4 1.3 hypothetical protein compare
PS417_15920 +0.4 1.8 TetR family transcriptional regulator compare
PS417_15440 +0.4 1.2 iron ABC transporter substrate-binding protein compare
PS417_01475 +0.4 2.0 cell division protein FtsQ compare
PS417_06135 +0.4 3.6 glycerol-3-phosphate acyltransferase compare
PS417_04075 +0.4 1.8 peptide ABC transporter substrate-binding protein compare
PS417_15895 +0.4 1.3 iron dicitrate transport regulator FecR compare
PS417_27250 +0.4 2.4 glycine cleavage system protein H compare
PS417_06845 +0.4 0.7 lipoprotein compare
PS417_24500 +0.4 0.9 DEAD/DEAH box helicase compare
PS417_12805 +0.4 3.1 glycogen branching protein compare
PS417_12730 +0.4 1.2 glycosyltransferase compare
PS417_08785 +0.4 1.5 urea transporter compare
PS417_13010 +0.4 1.1 alpha/beta hydrolase compare
PS417_09930 +0.4 1.1 hypothetical protein compare
PS417_00865 +0.4 2.0 hypothetical protein compare
PS417_26285 +0.4 2.1 3-hydroxybutyryl-CoA dehydrogenase compare
PS417_00795 +0.4 2.1 lipoprotein compare
PS417_13780 +0.4 2.5 integrase compare
PS417_08365 +0.4 0.6 hypothetical protein compare


Specific Phenotypes

For 15 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms