Experiment set32S568 for Pseudomonas simiae WCS417

Fraxetin 2 mM; solid stress

Group: solid stress
Media: + Fraxetin (2 mM)
Culturing: fluoroDangl_ML3b
By: Max Stassen on 29-Mar-24

Specific Phenotypes

For 15 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms

SEED Subsystems

Subsystem	#Specific
Iron acquisition in Vibrio	3
Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria	2
Transport of Iron	2
Biogenesis of cytochrome c oxidases	1
Coenzyme B12 biosynthesis	1
Oxidative stress	1
Photorespiration (oxidative C2 cycle)	1
Thioredoxin-disulfide reductase	1
Transport of Manganese	1
ZZ gjo need homes	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Tryptophan metabolism
• Selenoamino acid metabolism
• Methane metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
superoxide radicals degradation	2	2	1
methanol oxidation to formaldehyde IV	2	1	1
ethanol degradation IV	3	3	1
Ac/N-end rule pathway	21	6	6
reactive oxygen species degradation	4	4	1
Arg/N-end rule pathway (eukaryotic)	14	8	1