Experiment set32S567 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -6.6 -4.6 LysR family transcriptional regulator compare
PS417_22570 -4.6 -1.8 H-NS histone compare
PS417_06680 -3.8 -5.1 nuclease PIN compare
PS417_23915 -3.7 -5.4 pantoate--beta-alanine ligase compare
PS417_27795 -3.3 -1.3 orotate phosphoribosyltransferase compare
PS417_27195 -3.0 -2.3 N-acetylglutamate synthase compare
PS417_28050 -2.8 -2.1 hypothetical protein compare
PS417_04365 -2.7 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21430 -2.7 -2.5 3-oxoacyl-ACP synthase compare
PS417_00650 -2.5 -1.7 LysR family transcriptional regulator compare
PS417_03560 -2.1 -2.2 GTP-binding protein compare
PS417_28070 -2.1 -8.5 phosphate ABC transporter ATP-binding protein compare
PS417_06375 -2.1 -0.8 deoxycytidine triphosphate deaminase compare
PS417_04385 -2.1 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_22565 -2.1 -0.8 formyltetrahydrofolate deformylase compare
PS417_10645 -1.9 -5.3 magnesium ABC transporter ATPase compare
PS417_22450 -1.9 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_24605 -1.9 -4.9 thiamine-phosphate pyrophosphorylase compare
PS417_16555 -1.9 -2.1 cupin compare
PS417_23380 -1.8 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_27870 -1.7 -2.1 ATP-dependent DNA helicase RecG compare
PS417_26775 -1.7 -8.5 thiazole synthase compare
PS417_13510 -1.7 -1.6 polyketide cyclase compare
PS417_28080 -1.6 -9.2 phosphate ABC transporter permease compare
PS417_14045 -1.6 -4.2 alkyl hydroperoxide reductase compare
PS417_08540 -1.6 -2.8 RNA helicase compare
PS417_24600 -1.6 -5.8 hydrogenase compare
PS417_02555 -1.6 -8.5 exoribonuclease R compare
PS417_04380 -1.6 -1.2 ABC transporter permease compare
PS417_02975 -1.6 -5.7 3-dehydroquinate dehydratase compare
PS417_27135 -1.5 -1.0 glutamine synthetase compare
PS417_23805 -1.5 -4.2 acetolactate synthase 3 regulatory subunit compare
PS417_21480 -1.5 -1.8 23S rRNA pseudouridylate synthase compare
PS417_23375 -1.5 -2.3 cytochrome C oxidase compare
PS417_09210 -1.5 -2.5 TetR family transcriptional regulator compare
PS417_04390 -1.4 -3.5 toluene tolerance protein compare
PS417_02485 -1.4 -2.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23810 -1.4 -7.2 acetolactate synthase 3 catalytic subunit compare
PS417_00185 -1.3 -3.5 tryptophan synthase subunit beta compare
PS417_03260 -1.3 -1.4 5S ribosomal RNA compare
PS417_02270 -1.3 -3.5 carbamoyltransferase compare
PS417_08410 -1.3 -2.0 hypothetical protein compare
PS417_19955 -1.3 -1.1 hypothetical protein compare
PS417_26990 -1.2 -0.8 RNA pyrophosphohydrolase compare
PS417_00660 -1.2 -3.5 DSBA oxidoreductase compare
PS417_00180 -1.2 -2.0 tryptophan synthase subunit alpha compare
PS417_27290 -1.2 -1.9 hypothetical protein compare
PS417_02255 -1.2 -2.1 lipopolysaccharide kinase compare
PS417_06335 -1.1 -3.5 S-formylglutathione hydrolase compare
PS417_09590 -1.1 -3.6 membrane protein compare
PS417_19350 -1.1 -3.0 GTP cyclohydrolase compare
PS417_23390 -1.1 -6.0 ubiquinol oxidase subunit II compare
PS417_00665 -1.1 -5.4 RND transporter compare
PS417_28075 -1.1 -2.9 phosphate ABC transporter permease compare
PS417_07640 -1.1 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01620 -1.1 -3.2 preprotein translocase subunit SecB compare
PS417_09625 -1.1 -2.6 sugar ABC transporter substrate-binding protein compare
PS417_15090 -1.0 -1.4 hypothetical protein compare
PS417_09600 -1.0 -3.9 glycosyl transferase family 1 compare
PS417_23385 -1.0 -4.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_21625 -1.0 -1.1 DNA-binding protein compare
PS417_03830 -1.0 -6.4 protein disaggregation chaperone compare
PS417_12655 -1.0 -2.9 methionine aminopeptidase compare
PS417_19675 -1.0 -4.5 chemotaxis protein CheY compare
PS417_19790 -1.0 -3.2 ATP synthase compare
PS417_27815 -1.0 -1.7 hypothetical protein compare
PS417_22445 -1.0 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_08170 -1.0 -6.5 capsular biosynthesis protein compare
PS417_00655 -0.9 -4.3 DSBA oxidoreductase compare
PS417_27425 -0.9 -4.0 exopolyphosphatase compare
PS417_02280 -0.9 -1.0 GlcNAc-PI de-N-acetylase compare
PS417_24265 -0.9 -4.2 ABC transporter ATP-binding protein compare
PS417_26985 -0.9 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01855 -0.9 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_06245 -0.9 -1.2 zinc metallopeptidase RseP compare
PS417_07710 -0.9 -2.4 membrane protein compare
PS417_23950 -0.9 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_11705 -0.9 -4.9 cyclic peptide transporter compare
PS417_05595 -0.9 -5.5 ornithine carbamoyltransferase compare
PS417_09330 -0.9 -1.8 NAD(P)H-quinone oxidoreductase compare
PS417_15075 -0.9 -4.8 NAD-glutamate dehydrogenase compare
PS417_16560 -0.9 -2.8 GNAT family acetyltransferase compare
PS417_04585 -0.9 -1.1 hypothetical protein compare
PS417_05590 -0.9 -4.1 iron ABC transporter ATP-binding protein compare
PS417_11075 -0.9 -1.9 hydroxypyruvate isomerase compare
PS417_06500 -0.9 -1.1 hypothetical protein compare
PS417_15805 -0.8 -1.6 transporter compare
PS417_09150 -0.8 -2.1 energy transducer TonB compare
PS417_11940 -0.8 -5.8 TonB-dependent receptor compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_08545 -0.8 -1.0 aromatic ring-opening dioxygenase LigB compare
PS417_07940 -0.8 -2.5 hypothetical protein compare
PS417_27605 -0.8 -4.6 hypothetical protein compare
PS417_21595 -0.8 -3.3 flagellar biosynthesis protein FlgN compare
PS417_19850 -0.8 -4.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_11440 -0.8 -1.9 hypothetical protein compare
PS417_10405 -0.8 -1.1 filamentous hemagglutinin compare
PS417_19520 -0.8 -1.2 transcriptional regulator compare
PS417_01565 -0.8 -3.8 imidazole glycerol phosphate synthase compare
PS417_01605 -0.8 -0.8 phosphoglycerate mutase compare
PS417_15095 -0.8 -2.5 hypothetical protein compare
PS417_22705 -0.8 -2.6 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_06895 -0.8 -2.4 DNA-binding protein compare
PS417_22895 -0.8 -3.3 tyrosine recombinase XerD compare
PS417_19645 -0.8 -2.7 chemotaxis protein compare
PS417_21510 -0.8 -1.7 histidine kinase compare
PS417_19755 -0.8 -1.7 flagellar motor switch protein FliM compare
PS417_07695 -0.7 -3.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_26420 -0.7 -1.5 hypothetical protein compare
PS417_01575 -0.7 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_15505 -0.7 -3.3 glutaminase compare
PS417_22575 -0.7 -3.5 exonuclease I compare
PS417_19805 -0.7 -3.5 flagellar M-ring protein FliF compare
PS417_28085 -0.7 -5.9 phosphate-binding protein compare
PS417_19860 -0.7 -6.1 flagellar hook protein FlgL compare
PS417_03995 -0.7 -3.4 Fe(II)-dependent oxygenase compare
PS417_22195 -0.7 -3.2 peptidase compare
PS417_10920 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_01560 -0.7 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_04410 -0.7 -1.8 hypothetical protein compare
PS417_23370 -0.7 -2.1 protoheme IX farnesyltransferase compare
PS417_11945 -0.7 -2.7 hypothetical protein compare
PS417_22690 -0.7 -2.2 phosphogluconate dehydratase compare
PS417_03990 -0.7 -5.7 ligand-gated channel protein compare
PS417_02510 -0.7 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_28325 -0.7 -1.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_13640 -0.7 -1.3 ribose ABC transporter permease compare
PS417_19800 -0.7 -2.5 flagellar motor switch protein FliG compare
PS417_04375 -0.7 -0.9 ABC transporter ATP-binding protein compare
PS417_09615 -0.7 -3.1 glycosyl transferase family 1 compare
PS417_15540 -0.7 -1.3 NUDIX hydrolase compare
PS417_18235 -0.6 -1.8 nitrile hydratase compare
PS417_15495 -0.6 -4.3 FAD-dependent oxidoreductase compare
PS417_06365 -0.6 -3.9 RNA polymerase sigma factor compare
PS417_27940 -0.6 -1.6 type VI secretion protein compare
PS417_19795 -0.6 -5.4 flagellar assembly protein FliH compare
PS417_02210 -0.6 -3.3 diguanylate cyclase compare
PS417_11400 -0.6 -1.4 phosphoglycerate mutase compare
PS417_04420 -0.6 -3.7 histidinol dehydrogenase compare
PS417_21425 -0.6 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_21600 -0.6 -3.3 pilus assembly protein PilZ compare
PS417_11925 -0.6 -1.5 hypothetical protein compare
PS417_02880 -0.6 -0.8 copper chaperone compare
PS417_06205 -0.6 -3.6 methionine aminopeptidase compare
PS417_00045 -0.6 -1.1 glycerol acyltransferase compare
PS417_16855 -0.6 -1.1 cation:proton antiporter compare
PS417_15800 -0.6 -2.6 photosynthetic protein synthase I compare
PS417_22840 -0.6 -0.7 tRNA-Met compare
PS417_02865 -0.6 -2.0 peptidase compare
PS417_05815 -0.6 -1.9 recombinase RecA compare
PS417_00345 -0.6 -0.9 copper-binding protein compare
PS417_09325 -0.6 -2.7 peptidase S41 compare
PS417_27305 -0.6 -2.3 5-formyltetrahydrofolate cyclo-ligase compare
PS417_18780 -0.6 -1.3 flavin reductase compare
PS417_09595 -0.6 -3.2 membrane protein compare
PS417_19865 -0.6 -4.6 flagellar hook protein FlgK compare
PS417_23095 -0.6 -0.9 exodeoxyribonuclease compare
PS417_05445 -0.6 -1.1 DNA mismatch repair protein MutT compare
PS417_19840 -0.6 -4.5 flagellar cap protein FliD compare
PS417_09245 -0.6 -0.6 recombinase RdgC compare
PS417_23995 -0.6 -0.6 preprotein translocase subunit SecG compare
PS417_07120 -0.6 -2.6 RNA polymerase sigma-H factor compare
PS417_25405 -0.6 -4.5 catalase compare
PS417_27475 -0.6 -1.5 membrane protein compare
PS417_19880 -0.6 -4.2 flagellar basal body L-ring protein compare
PS417_02980 -0.6 -0.9 chemotaxis protein compare
PS417_27140 -0.6 -2.0 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_13145 -0.6 -0.9 50S ribosomal protein L21 compare
PS417_11485 -0.6 -0.9 AraC family transcriptional regulator compare
PS417_19735 -0.6 -4.1 flagellar biosynthesis protein FliQ compare
PS417_20725 -0.6 -1.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_23775 -0.6 -0.6 exodeoxyribonuclease V subunit beta compare
PS417_24500 -0.6 -1.2 DEAD/DEAH box helicase compare
PS417_04270 -0.5 -3.0 ribonuclease G compare
PS417_02575 -0.5 -1.3 membrane protein compare
PS417_11930 -0.5 -2.6 hypothetical protein compare
PS417_24535 -0.5 -1.3 membrane protein compare
PS417_18360 -0.5 -1.8 hypothetical protein compare
PS417_14040 -0.5 -2.9 alkyl hydroperoxide reductase compare
PS417_27585 -0.5 -0.8 diaminopimelate epimerase compare
PS417_19665 -0.5 -1.7 flagellar motor protein MotD compare
PS417_00380 -0.5 -1.5 zinc ABC transporter ATP-binding protein compare
PS417_10095 -0.5 -1.4 hypothetical protein compare
PS417_26605 -0.5 -0.8 malonate decarboxylase subunit beta compare
PS417_25225 -0.5 -0.8 MFS transporter compare
PS417_19740 -0.5 -4.2 flagellar biosynthesis protein flip compare
PS417_07870 -0.5 -1.4 hypothetical protein compare
PS417_20775 -0.5 -1.5 coproporphyrinogen III oxidase compare
PS417_22270 -0.5 -2.0 hypothetical protein compare
PS417_07615 -0.5 -2.6 TetR family transcriptional regulator compare
PS417_11460 -0.5 -2.1 divalent metal cation transporter MntH compare
PS417_21105 -0.5 -2.9 aminodeoxychorismate synthase compare
PS417_16845 -0.5 -1.9 monovalent cation/H+ antiporter subunit E compare
PS417_06735 -0.5 -1.5 3-oxoadipate enol-lactonase compare
PS417_19730 -0.5 -2.3 flagellar biosynthesis protein FliR compare
PS417_03300 -0.5 -1.4 alanine acetyltransferase compare
PS417_11715 -0.5 -1.3 chromophore maturation protein PvdO compare
PS417_05365 -0.5 -0.9 FAD-binding protein compare
PS417_26535 -0.5 -2.2 cytochrome B561 compare
PS417_08580 -0.5 -2.5 histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Fraxetin across organisms