Experiment set32S567 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; solid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_10720 +1.3 8.2 chemotaxis protein CheY compare
PS417_19825 +1.1 10.8 ATPase AAA compare
PS417_16370 +1.1 8.9 chemotaxis protein CheY compare
PS417_20785 +1.0 4.0 transcriptional regulator compare
PS417_26175 +1.0 1.3 sarcosine oxidase subunit gamma compare
PS417_20650 +1.0 8.1 hypothetical protein compare
PS417_08125 +1.0 0.6 prephenate dehydratase compare
PS417_00845 +0.9 2.8 transcriptional regulator compare
PS417_08220 +0.9 1.7 epimerase compare
PS417_17805 +0.9 2.3 microcin B17 processing protein McbC compare
PS417_16825 +0.9 2.1 membrane protein compare
PS417_19560 +0.8 7.2 amino acid ABC transporter substrate-binding protein compare
PS417_24885 +0.8 4.2 transcriptional regulator compare
PS417_06945 +0.8 1.7 membrane protein compare
PS417_08230 +0.8 2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08205 +0.8 4.3 acetyltransferase compare
PS417_08245 +0.8 1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_10275 +0.8 2.6 histidine kinase compare
PS417_27875 +0.8 4.4 histidine kinase compare
PS417_20635 +0.8 1.5 ABC transporter ATP-binding protein compare
PS417_27935 +0.8 1.9 type VI secretion protein compare
PS417_08090 +0.7 0.8 3-oxoacyl-ACP reductase compare
PS417_04860 +0.7 4.8 ATPase compare
PS417_26530 +0.7 1.8 hypothetical protein compare
PS417_24835 +0.7 4.3 hypothetical protein compare
PS417_08190 +0.7 5.6 membrane protein compare
PS417_00075 +0.7 1.6 hypothetical protein compare
PS417_07470 +0.7 1.3 hypothetical protein compare
PS417_21000 +0.7 2.1 CrfX protein compare
PS417_16680 +0.7 1.5 MFS transporter compare
PS417_22060 +0.7 1.3 hypothetical protein compare
PS417_15890 +0.7 1.3 RNA polymerase sigma factor compare
PS417_25645 +0.7 3.2 peptidase M23 compare
PS417_11350 +0.7 2.1 biopolymer transporter ExbB compare
PS417_02895 +0.7 2.3 precorrin-6Y C5,15-methyltransferase compare
PS417_28265 +0.7 1.1 pyridoxamine kinase compare
PS417_24615 +0.6 1.6 hypothetical protein compare
PS417_15480 +0.6 1.6 ABC transporter substrate-binding protein compare
PS417_03100 +0.6 1.0 pilus assembly protein compare
PS417_20705 +0.6 1.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_22210 +0.6 1.4 AraC family transcriptional regulator compare
PS417_08195 +0.6 4.0 hypothetical protein compare
PS417_19195 +0.6 2.1 hypothetical protein compare
PS417_04305 +0.6 1.1 aspartate ammonia-lyase compare
PS417_10765 +0.6 2.7 hypothetical protein compare
PS417_19600 +0.6 0.8 exonuclease compare
PS417_02160 +0.6 1.3 hypothetical protein compare
PS417_03525 +0.6 1.8 hypothetical protein compare
PS417_25650 +0.6 2.2 anhydro-N-acetylmuramic acid kinase compare
PS417_18940 +0.6 3.4 LysR family transcriptional regulator compare
PS417_24030 +0.6 2.2 MFS transporter compare
PS417_01915 +0.6 0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20670 +0.6 3.5 glycosyl transferase family 2 compare
PS417_02770 +0.6 2.7 membrane protein compare
PS417_22000 +0.6 2.9 glutathione S-transferase compare
PS417_04290 +0.6 2.9 hypothetical protein compare
PS417_08365 +0.6 1.0 hypothetical protein compare
PS417_20655 +0.5 3.9 group 1 glycosyl transferase compare
PS417_20660 +0.5 3.7 hypothetical protein compare
PS417_03380 +0.5 0.8 hypothetical protein compare
PS417_25120 +0.5 1.8 capsular biosynthesis protein compare
PS417_09705 +0.5 1.5 hypothetical protein compare
PS417_01405 +0.5 2.4 sugar transporter compare
PS417_25145 +0.5 1.3 hypothetical protein compare
PS417_02705 +0.5 1.2 urease accessory protein UreF compare
PS417_18265 +0.5 2.3 AsnC family transcriptional regulator compare
PS417_11865 +0.5 1.8 xylose isomerase compare
PS417_12190 +0.5 1.9 microcin ABC transporter ATP-binding protein compare
PS417_18765 +0.5 2.0 hypothetical protein compare
PS417_13075 +0.5 1.3 hypothetical protein compare
PS417_19200 +0.5 2.6 fumarate hydratase compare
PS417_07275 +0.5 1.1 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_13455 +0.5 1.9 alkaline proteinase inhibitor compare
PS417_10675 +0.5 1.0 TetR family transcriptional regulator compare
PS417_21360 +0.5 0.9 termination factor Rho compare
PS417_01415 +0.5 4.3 glycosyl transferase family 1 compare
PS417_11175 +0.5 1.8 AraC family transcriptional regulator compare
PS417_13575 +0.5 1.6 succinylglutamate desuccinylase compare
PS417_04985 +0.5 2.2 ketosteroid isomerase compare
PS417_17215 +0.5 1.7 peptidylprolyl isomerase compare
PS417_06780 +0.5 1.9 TetR family transcriptional regulator compare
PS417_17125 +0.5 1.9 transcriptional regulator compare
PS417_13095 +0.5 2.6 MFS transporter compare
PS417_22980 +0.5 1.8 GntR family transcriptional regulator compare
PS417_10025 +0.5 1.3 bacteriophage lambda NinG family protein compare
PS417_20840 +0.5 2.8 hypothetical protein compare
PS417_05825 +0.5 2.1 cytochrome D ubiquinol oxidase subunit II compare
PS417_21120 +0.5 2.1 phosphoserine phosphatase compare
PS417_06730 +0.5 1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_06125 +0.5 1.9 hypothetical protein compare
PS417_18885 +0.5 1.1 GntR family transcriptional regulator compare
PS417_03725 +0.5 1.2 acyltransferase compare
PS417_00865 +0.5 1.8 hypothetical protein compare
PS417_11510 +0.5 1.2 AraC family transcriptional regulator compare
PS417_13645 +0.5 2.0 ABC transporter compare
PS417_11445 +0.5 2.3 enoyl-CoA hydratase compare
PS417_24655 +0.5 2.4 hypothetical protein compare
PS417_04185 +0.5 0.7 hypothetical protein compare
PS417_13195 +0.5 1.6 RND transporter MFP subunit compare
PS417_11500 +0.5 2.7 hypothetical protein compare
PS417_01115 +0.5 1.3 serine acetyltransferase compare
PS417_10040 +0.4 0.8 MFS transporter compare
PS417_07440 +0.4 1.3 cyclic nucleotide-binding protein compare
PS417_15770 +0.4 1.0 pyridoxine 5'-phosphate oxidase compare
PS417_00195 +0.4 1.2 hypothetical protein compare
PS417_01410 +0.4 3.4 transporter compare
PS417_01145 +0.4 0.7 taurine transporter ATP-binding subunit compare
PS417_10145 +0.4 1.5 hypothetical protein compare
PS417_11585 +0.4 1.4 LuxR family transcriptional regulator compare
PS417_00810 +0.4 1.1 RNA polymerase sigma factor compare
PS417_07190 +0.4 1.1 MFS transporter compare
PS417_10370 +0.4 1.2 ATPase compare
PS417_09545 +0.4 1.4 aldehyde-activating protein compare
PS417_01395 +0.4 3.8 biofilm formation protein PelB compare
PS417_15370 +0.4 1.6 kinase compare
PS417_24155 +0.4 0.7 ATP-binding protein compare
PS417_24370 +0.4 0.6 (2Fe-2S)-binding protein compare
PS417_19240 +0.4 1.4 peptidase M42 compare
PS417_05435 +0.4 2.2 diguanylate cyclase compare
PS417_15400 +0.4 1.2 hypothetical protein compare
PS417_23615 +0.4 1.5 sulfate transporter compare
PS417_20645 +0.4 3.4 membrane protein compare
PS417_22350 +0.4 1.5 Fis family transcriptional regulator compare
PS417_25105 +0.4 2.2 hypothetical protein compare
PS417_20170 +0.4 1.6 hypothetical protein compare
PS417_22375 +0.4 0.7 cold-shock protein compare
PS417_12250 +0.4 2.2 LysR family transcriptional regulator compare
PS417_19270 +0.4 2.0 hypothetical protein compare
PS417_21990 +0.4 1.2 LacI family transcriptional regulator compare
PS417_17830 +0.4 1.7 4-hydroxyphenylacetate isomerase compare
PS417_17645 +0.4 1.0 RND transporter compare
PS417_15030 +0.4 0.9 short-chain dehydrogenase compare
PS417_08435 +0.4 0.8 pilus assembly protein PilZ compare
PS417_08200 +0.4 1.5 hypothetical protein compare
PS417_01420 +0.4 3.0 histidine kinase compare
PS417_13395 +0.4 2.8 phosphoglucomutase compare
PS417_16715 +0.4 1.1 DoxX family protein compare
PS417_07560 +0.4 0.7 universal stress protein UspA compare
PS417_22330 +0.4 1.3 arginine deiminase compare
PS417_11900 +0.4 2.2 conjugal transfer protein TraR compare
PS417_14305 +0.4 1.6 hydroxyproline-2-epimerase compare
PS417_24840 +0.4 0.5 hypothetical protein compare
PS417_19295 +0.4 2.6 hypothetical protein compare
PS417_17855 +0.4 1.6 major facilitator transporter compare
PS417_21185 +0.4 0.8 hypothetical protein compare
PS417_19095 +0.4 0.8 hypothetical protein compare
PS417_28295 +0.4 1.4 glutamine synthetase compare
PS417_18635 +0.4 1.5 4-hydroxybenzoyl-CoA thioesterase compare
PS417_10245 +0.4 1.0 hypothetical protein compare
PS417_03015 +0.4 2.8 hypothetical protein compare
PS417_24560 +0.4 1.4 ferrous iron transporter compare
PS417_20140 +0.4 0.7 nucleoprotein/polynucleotide-associated enzyme compare
PS417_26400 +0.4 1.8 metal-dependent hydrolase compare
PS417_15285 +0.4 0.7 type VI secretion protein compare
PS417_13065 +0.4 2.0 UDP pyrophosphate phosphatase compare
PS417_26230 +0.4 1.4 electron transfer flavoprotein subunit alpha compare
PS417_04800 +0.4 1.1 alginate O-acetyltransferase compare
PS417_11950 +0.4 0.9 hypothetical protein compare
PS417_07110 +0.4 1.3 hypothetical protein compare
PS417_19830 +0.4 1.5 flagellar assembly protein FliT compare
PS417_05160 +0.4 0.6 DNA polymerase III subunit chi compare
PS417_02020 +0.4 1.5 LysR family transcriptional regulator compare
PS417_18225 +0.4 2.1 phenol degradation protein meta compare
PS417_06970 +0.4 1.5 LysR family transcriptional regulator compare
PS417_08420 +0.4 1.9 lipoprotein compare
PS417_27965 +0.4 2.2 hypothetical protein compare
PS417_08155 +0.4 0.5 integration host factor subunit beta compare
PS417_08825 +0.4 1.5 TetR family transcriptional regulator compare
PS417_24355 +0.4 1.3 MFS transporter compare
PS417_01685 +0.4 1.3 membrane protein compare
PS417_14050 +0.4 1.5 recombinase compare
PS417_15750 +0.4 1.1 protease compare
PS417_01390 +0.4 2.9 PbsX family transcriptional regulator compare
PS417_08360 +0.4 1.4 DoxX family protein compare
PS417_22870 +0.4 0.9 lipoprotein compare
PS417_13780 +0.3 1.9 integrase compare
PS417_07700 +0.3 0.8 chromosome partitioning protein ParA compare
PS417_26730 +0.3 0.3 pyrroline-5-carboxylate reductase compare
PS417_20440 +0.3 2.2 integrase compare
PS417_25775 +0.3 1.8 lipoprotein compare
PS417_07010 +0.3 1.6 pseudouridine synthase compare
PS417_12280 +0.3 1.2 MerR family transcriptional regulator compare
PS417_08225 +0.3 1.7 acetolactate synthase compare
PS417_26850 +0.3 0.5 twin-arginine translocation pathway signal protein compare
PS417_15330 +0.3 1.9 type VI secretion protein ImpA compare
PS417_10600 +0.3 1.0 hypothetical protein compare
PS417_00900 +0.3 1.1 4-aminobutyrate aminotransferase compare
PS417_23710 +0.3 1.8 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
PS417_16520 +0.3 0.9 cold-shock protein compare
PS417_18055 +0.3 0.7 general secretion pathway protein GspK compare
PS417_19430 +0.3 1.3 ureidoglycolate hydrolase compare
PS417_05290 +0.3 1.7 hypothetical protein compare
PS417_16065 +0.3 1.3 3-phytase compare
PS417_16120 +0.3 1.8 transcriptional regulator compare
PS417_09930 +0.3 0.6 hypothetical protein compare
PS417_09220 +0.3 1.2 cupin compare
PS417_16400 +0.3 1.1 NAD(P)H-quinone oxidoreductase compare
PS417_27680 +0.3 2.1 acetyl-CoA hydrolase compare
PS417_04845 +0.3 2.4 GDP-mannose dehydrogenase compare
PS417_06845 +0.3 0.9 lipoprotein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Fraxetin across organisms