Experiment set32S566 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -4.2 -3.3 hypothetical protein compare
PS417_23915 -4.0 -5.4 pantoate--beta-alanine ligase compare
PS417_16555 -3.9 -2.7 cupin compare
PS417_27865 -3.6 -5.4 LysR family transcriptional regulator compare
PS417_06680 -2.8 -6.4 nuclease PIN compare
PS417_22570 -2.7 -1.5 H-NS histone compare
PS417_21480 -2.5 -2.2 23S rRNA pseudouridylate synthase compare
PS417_04380 -2.5 -1.7 ABC transporter permease compare
PS417_22450 -2.3 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_10645 -2.1 -6.2 magnesium ABC transporter ATPase compare
PS417_19955 -2.1 -2.6 hypothetical protein compare
PS417_08125 -2.0 -0.8 prephenate dehydratase compare
PS417_22565 -2.0 -0.8 formyltetrahydrofolate deformylase compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_13510 -1.8 -1.6 polyketide cyclase compare
PS417_23805 -1.8 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_02280 -1.7 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_02555 -1.7 -8.6 exoribonuclease R compare
PS417_27595 -1.7 -3.0 recombinase XerC compare
PS417_28070 -1.6 -7.8 phosphate ABC transporter ATP-binding protein compare
PS417_08135 -1.6 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23810 -1.5 -7.2 acetolactate synthase 3 catalytic subunit compare
PS417_26775 -1.4 -8.1 thiazole synthase compare
PS417_03830 -1.4 -6.7 protein disaggregation chaperone compare
PS417_08335 -1.4 -2.5 hypothetical protein compare
PS417_00755 -1.4 -1.1 biofilm PGA synthesis protein PgaD compare
PS417_28080 -1.3 -9.2 phosphate ABC transporter permease compare
PS417_02485 -1.3 -2.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02975 -1.3 -4.6 3-dehydroquinate dehydratase compare
PS417_24600 -1.3 -5.1 hydrogenase compare
PS417_27425 -1.3 -5.2 exopolyphosphatase compare
PS417_23370 -1.3 -3.2 protoheme IX farnesyltransferase compare
PS417_02255 -1.3 -2.7 lipopolysaccharide kinase compare
PS417_19605 -1.3 -1.4 hypothetical protein compare
PS417_02865 -1.3 -4.5 peptidase compare
PS417_09590 -1.2 -4.6 membrane protein compare
PS417_07710 -1.2 -2.6 membrane protein compare
PS417_00650 -1.2 -1.1 LysR family transcriptional regulator compare
PS417_02720 -1.1 -1.2 TetR family transcriptional regulator compare
PS417_17610 -1.1 -1.8 AsnC family transcriptional regulator compare
PS417_04390 -1.1 -3.0 toluene tolerance protein compare
PS417_05815 -1.1 -3.4 recombinase RecA compare
PS417_13075 -1.1 -1.7 hypothetical protein compare
PS417_16195 -1.1 -1.4 AraC family transcriptional regulator compare
PS417_04365 -1.1 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_05365 -1.1 -1.5 FAD-binding protein compare
PS417_26805 -1.1 -1.3 cell division protein FtsE compare
PS417_11705 -1.0 -4.7 cyclic peptide transporter compare
PS417_19850 -1.0 -5.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_01620 -1.0 -1.3 preprotein translocase subunit SecB compare
PS417_15540 -1.0 -1.9 NUDIX hydrolase compare
PS417_27195 -1.0 -1.2 N-acetylglutamate synthase compare
PS417_22445 -1.0 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_15465 -1.0 -2.2 carboxynorspermidine decarboxylase compare
PS417_19675 -1.0 -2.9 chemotaxis protein CheY compare
PS417_01915 -0.9 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08090 -0.9 -0.9 3-oxoacyl-ACP reductase compare
PS417_25175 -0.9 -2.7 hypothetical protein compare
PS417_00510 -0.9 -1.1 membrane protein compare
PS417_02270 -0.9 -2.9 carbamoyltransferase compare
PS417_13175 -0.9 -2.2 iron transporter compare
PS417_12655 -0.9 -4.0 methionine aminopeptidase compare
PS417_19835 -0.9 -1.9 flagellar biosynthesis protein FliS compare
PS417_13205 -0.9 -1.5 isochorismate-pyruvate lyase compare
PS417_20715 -0.9 -1.5 cytochrome Cbb3 compare
PS417_27815 -0.9 -1.0 hypothetical protein compare
PS417_07640 -0.9 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04270 -0.9 -5.7 ribonuclease G compare
PS417_09470 -0.9 -1.3 hypothetical protein compare
PS417_27870 -0.9 -1.3 ATP-dependent DNA helicase RecG compare
PS417_23910 -0.9 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_01920 -0.9 -0.9 ATP-dependent protease subunit HslV compare
PS417_19755 -0.8 -1.8 flagellar motor switch protein FliM compare
PS417_09595 -0.8 -4.1 membrane protein compare
PS417_01290 -0.8 -1.8 ADP-ribose diphosphatase compare
PS417_23385 -0.8 -4.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_08170 -0.8 -5.6 capsular biosynthesis protein compare
PS417_08410 -0.8 -1.4 hypothetical protein compare
PS417_27135 -0.8 -0.7 glutamine synthetase compare
PS417_08540 -0.8 -1.8 RNA helicase compare
PS417_22990 -0.8 -1.3 iron dicitrate transport regulator FecR compare
PS417_21625 -0.8 -1.0 DNA-binding protein compare
PS417_20880 -0.8 -1.2 GntR family transcriptional regulator compare
PS417_20025 -0.8 -1.6 alpha-ribazole phosphatase compare
PS417_04385 -0.8 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_19425 -0.8 -1.0 allantoicase compare
PS417_04410 -0.8 -2.2 hypothetical protein compare
PS417_18455 -0.8 -1.4 hypothetical protein compare
PS417_16490 -0.8 -1.0 cell division protein FtsK compare
PS417_20985 -0.8 -0.5 porin compare
PS417_09730 -0.8 -2.7 adenylylsulfate kinase compare
PS417_15915 -0.8 -1.1 hypothetical protein compare
PS417_16855 -0.8 -1.8 cation:proton antiporter compare
PS417_23390 -0.8 -3.4 ubiquinol oxidase subunit II compare
PS417_25720 -0.8 -4.0 anthranilate synthase component II compare
PS417_14940 -0.8 -1.5 LysR family transcriptional regulator compare
PS417_21425 -0.8 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_19730 -0.7 -3.2 flagellar biosynthesis protein FliR compare
PS417_00995 -0.7 -1.0 alpha/beta hydrolase compare
PS417_02765 -0.7 -1.5 phosphate starvation-inducible protein PsiF compare
PS417_22895 -0.7 -4.0 tyrosine recombinase XerD compare
PS417_22535 -0.7 -3.1 ornithine acetyltransferase compare
PS417_11460 -0.7 -3.0 divalent metal cation transporter MntH compare
PS417_19655 -0.7 -2.5 chemotaxis protein CheW compare
PS417_00655 -0.7 -4.3 DSBA oxidoreductase compare
PS417_15560 -0.7 -2.3 hypothetical protein compare
PS417_15075 -0.7 -4.9 NAD-glutamate dehydrogenase compare
PS417_10920 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_19350 -0.7 -2.2 GTP cyclohydrolase compare
PS417_07950 -0.7 -2.7 MFS transporter compare
PS417_02510 -0.7 -2.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_00705 -0.7 -1.4 MarR family transcriptional regulator compare
PS417_19860 -0.7 -5.5 flagellar hook protein FlgL compare
PS417_06245 -0.7 -0.8 zinc metallopeptidase RseP compare
PS417_11715 -0.7 -2.3 chromophore maturation protein PvdO compare
PS417_09680 -0.7 -1.4 hydrolase compare
PS417_15400 -0.7 -1.5 hypothetical protein compare
PS417_19785 -0.7 -1.8 flagellar biogenesis protein compare
PS417_08435 -0.7 -1.3 pilus assembly protein PilZ compare
PS417_06895 -0.7 -2.1 DNA-binding protein compare
PS417_25730 -0.7 -2.5 phosphoglycolate phosphatase compare
PS417_25710 -0.7 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_05635 -0.6 -4.9 membrane protein compare
PS417_16510 -0.6 -2.8 Clp protease ClpX compare
PS417_02805 -0.6 -1.0 urease subunit gamma compare
PS417_19840 -0.6 -5.3 flagellar cap protein FliD compare
PS417_11755 -0.6 -2.9 diacetyl reductase compare
PS417_21065 -0.6 -1.4 3-methylitaconate isomerase compare
PS417_07565 -0.6 -1.5 hypothetical protein compare
PS417_14925 -0.6 -2.6 2-methylcitrate dehydratase compare
PS417_27435 -0.6 -3.9 polyphosphate kinase compare
PS417_26145 -0.6 -2.0 hypothetical protein compare
PS417_11300 -0.6 -2.1 general secretion pathway protein GspE compare
PS417_26295 -0.6 -1.3 gamma-butyrobetaine dioxygenase compare
PS417_19805 -0.6 -2.9 flagellar M-ring protein FliF compare
PS417_08330 -0.6 -1.9 terminase compare
PS417_18150 -0.6 -2.1 chemotaxis protein CheY compare
PS417_19695 -0.6 -4.2 flagellar biosynthesis sigma factor compare
PS417_22810 -0.6 -1.7 DNA base-flipping protein YbaZ compare
PS417_22400 -0.6 -4.1 7-cyano-7-deazaguanine synthase compare
PS417_12390 -0.6 -0.8 hypothetical protein compare
PS417_28075 -0.6 -1.9 phosphate ABC transporter permease compare
PS417_16560 -0.6 -2.0 GNAT family acetyltransferase compare
PS417_24935 -0.6 -0.8 hypothetical protein compare
PS417_23900 -0.6 -3.3 poly(A) polymerase compare
PS417_09625 -0.6 -1.9 sugar ABC transporter substrate-binding protein compare
PS417_28515 -0.6 -1.5 16S rRNA methyltransferase compare
PS417_05210 -0.6 -2.9 copper oxidase compare
PS417_10815 -0.6 -2.3 TetR family transcriptional regulator compare
PS417_09220 -0.6 -1.1 cupin compare
PS417_11345 -0.6 -2.0 membrane protein compare
PS417_19795 -0.6 -5.1 flagellar assembly protein FliH compare
PS417_03260 -0.6 -0.7 5S ribosomal RNA compare
PS417_02175 -0.6 -1.7 transcriptional regulator compare
PS417_10695 -0.6 -2.6 decarboxylase compare
PS417_27795 -0.6 -0.4 orotate phosphoribosyltransferase compare
PS417_22840 -0.6 -1.1 tRNA-Met compare
PS417_12310 -0.6 -2.9 methionine synthase compare
PS417_23775 -0.6 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_07170 -0.6 -1.9 hypothetical protein compare
PS417_21555 -0.5 -4.4 flagellar hook protein FlgE compare
PS417_27490 -0.5 -1.6 hypothetical protein compare
PS417_27605 -0.5 -2.1 hypothetical protein compare
PS417_23855 -0.5 -1.2 ABC transporter substrate-binding protein compare
PS417_05840 -0.5 -1.7 LuxR family transcriptional regulator compare
PS417_19870 -0.5 -1.5 flagellar rod assembly protein FlgJ compare
PS417_17505 -0.5 -2.0 LuxR family transcriptional regulator compare
PS417_09600 -0.5 -2.2 glycosyl transferase family 1 compare
PS417_25985 -0.5 -1.3 dethiobiotin synthetase compare
PS417_12840 -0.5 -1.5 TetR family transcriptional regulator compare
PS417_01945 -0.5 -1.2 nuclease compare
PS417_06335 -0.5 -1.6 S-formylglutathione hydrolase compare
PS417_17680 -0.5 -1.5 ABC transporter compare
PS417_21600 -0.5 -2.6 pilus assembly protein PilZ compare
PS417_21740 -0.5 -2.6 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_11940 -0.5 -3.7 TonB-dependent receptor compare
PS417_24500 -0.5 -1.1 DEAD/DEAH box helicase compare
PS417_00665 -0.5 -2.6 RND transporter compare
PS417_08105 -0.5 -4.1 N-ethylammeline chlorohydrolase compare
PS417_20775 -0.5 -1.8 coproporphyrinogen III oxidase compare
PS417_04420 -0.5 -2.9 histidinol dehydrogenase compare
PS417_11375 -0.5 -1.0 hypothetical protein compare
PS417_02395 -0.5 -1.2 DNA topoisomerase IV subunit B compare
PS417_24385 -0.5 -2.4 tRNA (uracil-5-)-methyltransferase compare
PS417_00870 -0.5 -1.8 hypothetical protein compare
PS417_06400 -0.5 -1.6 succinylglutamate desuccinylase compare
PS417_27585 -0.5 -0.7 diaminopimelate epimerase compare
PS417_19885 -0.5 -1.1 flagellar basal body rod protein FlgG compare
PS417_10810 -0.5 -1.4 hypothetical protein compare
PS417_24345 -0.5 -1.9 ubiquinol oxidase subunit II compare
PS417_04170 -0.5 -2.3 stringent starvation protein A compare
PS417_04180 -0.5 -2.1 GntR family transcriptional regulator compare
PS417_06770 -0.5 -2.2 multidrug transporter compare
PS417_04865 -0.5 -2.2 molybdenum cofactor biosynthesis protein MoaC compare
PS417_12855 -0.5 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26985 -0.5 -2.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10985 -0.5 -0.7 NADH:flavin oxidoreductase compare
PS417_00485 -0.5 -0.9 ABC transporter permease compare
PS417_17155 -0.5 -0.9 cytochrome B561 compare
PS417_12835 -0.5 -3.0 GNAT family acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Fraxetin across organisms