Experiment set32S565 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_21480 -4.7 -2.9 23S rRNA pseudouridylate synthase compare
PS417_23915 -4.1 -5.6 pantoate--beta-alanine ligase compare
PS417_27795 -3.2 -1.2 orotate phosphoribosyltransferase compare
PS417_23380 -3.0 -4.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_01915 -2.8 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_18310 -2.8 -1.7 hypothetical protein compare
PS417_08155 -2.8 -2.2 integration host factor subunit beta compare
PS417_04380 -2.6 -1.6 ABC transporter permease compare
PS417_06680 -2.5 -6.2 nuclease PIN compare
PS417_04385 -2.4 -2.3 organic solvent ABC transporter substrate-binding protein compare
PS417_27870 -2.4 -3.3 ATP-dependent DNA helicase RecG compare
PS417_16555 -2.3 -2.5 cupin compare
PS417_26990 -2.3 -1.2 RNA pyrophosphohydrolase compare
PS417_01580 -2.3 -2.4 imidazole glycerol phosphate synthase compare
PS417_27195 -2.3 -2.0 N-acetylglutamate synthase compare
PS417_01565 -2.2 -8.4 imidazole glycerol phosphate synthase compare
PS417_10645 -2.2 -6.2 magnesium ABC transporter ATPase compare
PS417_28050 -2.2 -1.6 hypothetical protein compare
PS417_05595 -2.2 -7.9 ornithine carbamoyltransferase compare
PS417_27135 -2.2 -1.1 glutamine synthetase compare
PS417_23375 -2.2 -2.7 cytochrome C oxidase compare
PS417_23385 -2.2 -8.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_26730 -2.2 -1.1 pyrroline-5-carboxylate reductase compare
PS417_09590 -2.1 -3.3 membrane protein compare
PS417_24605 -2.0 -5.0 thiamine-phosphate pyrophosphorylase compare
PS417_19350 -2.0 -4.2 GTP cyclohydrolase compare
PS417_24600 -2.0 -7.2 hydrogenase compare
PS417_26775 -1.9 -9.2 thiazole synthase compare
PS417_01575 -1.9 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04365 -1.8 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23370 -1.7 -4.0 protoheme IX farnesyltransferase compare
PS417_24615 -1.7 -1.9 hypothetical protein compare
PS417_22445 -1.7 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_01855 -1.7 -2.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_13205 -1.6 -2.8 isochorismate-pyruvate lyase compare
PS417_02510 -1.6 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22570 -1.5 -1.1 H-NS histone compare
PS417_02280 -1.5 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_02555 -1.5 -7.8 exoribonuclease R compare
PS417_04390 -1.5 -2.3 toluene tolerance protein compare
PS417_08410 -1.4 -2.6 hypothetical protein compare
PS417_04420 -1.4 -7.6 histidinol dehydrogenase compare
PS417_06245 -1.4 -1.6 zinc metallopeptidase RseP compare
PS417_16490 -1.4 -1.2 cell division protein FtsK compare
PS417_09600 -1.4 -4.4 glycosyl transferase family 1 compare
PS417_27425 -1.4 -3.8 exopolyphosphatase compare
PS417_28070 -1.4 -6.1 phosphate ABC transporter ATP-binding protein compare
PS417_23390 -1.4 -6.4 ubiquinol oxidase subunit II compare
PS417_04585 -1.4 -1.7 hypothetical protein compare
PS417_22620 -1.3 -3.3 pyruvate kinase compare
PS417_06895 -1.3 -2.8 DNA-binding protein compare
PS417_21430 -1.3 -1.4 3-oxoacyl-ACP synthase compare
PS417_00650 -1.3 -1.1 LysR family transcriptional regulator compare
PS417_02255 -1.3 -2.1 lipopolysaccharide kinase compare
PS417_22690 -1.2 -1.8 phosphogluconate dehydratase compare
PS417_05325 -1.2 -2.4 fimbrial protein compare
PS417_07710 -1.2 -2.8 membrane protein compare
PS417_21625 -1.2 -1.2 DNA-binding protein compare
PS417_01560 -1.2 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_01850 -1.2 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_17805 -1.1 -2.3 microcin B17 processing protein McbC compare
PS417_21915 -1.1 -2.9 LysR family transcriptional regulator compare
PS417_09595 -1.1 -4.1 membrane protein compare
PS417_27300 -1.1 -0.8 cell division protein ZapA compare
PS417_08090 -1.1 -0.9 3-oxoacyl-ACP reductase compare
PS417_28080 -1.1 -7.8 phosphate ABC transporter permease compare
PS417_26995 -1.1 -6.6 phosphoserine phosphatase compare
PS417_20855 -1.1 -1.3 hypothetical protein compare
PS417_03830 -1.1 -6.1 protein disaggregation chaperone compare
PS417_24745 -1.0 -2.0 gamma-glutamyl phosphate reductase compare
PS417_18425 -1.0 -1.4 sporulation protein compare
PS417_02415 -1.0 -2.4 phosphoserine phosphatase compare
PS417_23995 -1.0 -0.9 preprotein translocase subunit SecG compare
PS417_22450 -1.0 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_25720 -1.0 -5.1 anthranilate synthase component II compare
PS417_02225 -1.0 -2.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_15975 -1.0 -2.2 glutamate carboxypeptidase compare
PS417_09830 -0.9 -3.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_02485 -0.9 -1.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04415 -0.9 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02880 -0.9 -1.3 copper chaperone compare
PS417_03300 -0.9 -2.4 alanine acetyltransferase compare
PS417_07695 -0.9 -3.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_24370 -0.9 -0.9 (2Fe-2S)-binding protein compare
PS417_14045 -0.9 -2.4 alkyl hydroperoxide reductase compare
PS417_23810 -0.9 -5.4 acetolactate synthase 3 catalytic subunit compare
PS417_23900 -0.9 -4.9 poly(A) polymerase compare
PS417_22935 -0.9 -2.3 hypothetical protein compare
PS417_22535 -0.9 -3.5 ornithine acetyltransferase compare
PS417_02975 -0.9 -3.8 3-dehydroquinate dehydratase compare
PS417_01955 -0.9 -4.4 peptidase compare
PS417_02885 -0.9 -2.3 hypothetical protein compare
PS417_23910 -0.9 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_06735 -0.8 -1.7 3-oxoadipate enol-lactonase compare
PS417_04440 -0.8 -1.8 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_27835 -0.8 -4.6 endoribonuclease compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_17680 -0.8 -1.7 ABC transporter compare
PS417_10275 -0.8 -2.3 histidine kinase compare
PS417_02270 -0.8 -2.3 carbamoyltransferase compare
PS417_20985 -0.8 -0.5 porin compare
PS417_21360 -0.8 -1.0 termination factor Rho compare
PS417_09615 -0.8 -2.9 glycosyl transferase family 1 compare
PS417_06770 -0.8 -3.7 multidrug transporter compare
PS417_22695 -0.8 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_27705 -0.8 -1.3 amino acid dehydrogenase compare
PS417_22530 -0.8 -3.4 hypothetical protein compare
PS417_24895 -0.8 -1.1 hypothetical protein compare
PS417_22575 -0.8 -4.5 exonuclease I compare
PS417_22205 -0.7 -4.3 potassium transporter TrkH compare
PS417_01945 -0.7 -2.0 nuclease compare
PS417_01620 -0.7 -1.9 preprotein translocase subunit SecB compare
PS417_27315 -0.7 -1.0 hypothetical protein compare
PS417_16715 -0.7 -0.9 DoxX family protein compare
PS417_06355 -0.7 -1.3 protein-L-isoaspartate O-methyltransferase compare
PS417_26605 -0.7 -0.8 malonate decarboxylase subunit beta compare
PS417_20880 -0.7 -2.2 GntR family transcriptional regulator compare
PS417_21425 -0.7 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_08990 -0.7 -2.3 ABC transporter substrate-binding protein compare
PS417_24800 -0.7 -3.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_27595 -0.7 -1.0 recombinase XerC compare
PS417_04410 -0.7 -1.7 hypothetical protein compare
PS417_28085 -0.7 -5.4 phosphate-binding protein compare
PS417_01285 -0.7 -0.9 haloacid dehalogenase compare
PS417_22400 -0.7 -4.7 7-cyano-7-deazaguanine synthase compare
PS417_11615 -0.7 -1.4 urea ABC transporter ATP-binding protein compare
PS417_12695 -0.7 -2.2 mannitol dehydrogenase compare
PS417_02355 -0.7 -4.4 thiamine biosynthesis protein ThiC compare
PS417_10015 -0.7 -0.9 hypothetical protein compare
PS417_18105 -0.7 -1.3 iron-dicitrate transporter substrate-binding subunit compare
PS417_04595 -0.7 -1.3 cell division protein MraZ compare
PS417_08540 -0.7 -1.5 RNA helicase compare
PS417_27605 -0.7 -4.0 hypothetical protein compare
PS417_12585 -0.7 -3.5 acriflavine resistance protein B compare
PS417_15110 -0.7 -2.6 protein BatD compare
PS417_11930 -0.7 -3.2 hypothetical protein compare
PS417_21830 -0.7 -3.0 TetR family transcriptional regulator compare
PS417_11440 -0.7 -1.3 hypothetical protein compare
PS417_23250 -0.7 -3.0 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_22895 -0.7 -4.4 tyrosine recombinase XerD compare
PS417_07595 -0.7 -2.3 PasA protein compare
PS417_23775 -0.7 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_24155 -0.7 -0.4 ATP-binding protein compare
PS417_06145 -0.7 -0.9 hypothetical protein compare
PS417_22855 -0.6 -2.4 ssDNA exonuclease RecJ compare
PS417_09625 -0.6 -1.7 sugar ABC transporter substrate-binding protein compare
PS417_23805 -0.6 -1.9 acetolactate synthase 3 regulatory subunit compare
PS417_23045 -0.6 -2.2 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_13510 -0.6 -0.8 polyketide cyclase compare
PS417_04115 -0.6 -3.6 alpha/beta hydrolase compare
PS417_21655 -0.6 -0.8 aspartate kinase compare
PS417_06775 -0.6 -3.1 antibiotic transporter compare
PS417_05830 -0.6 -1.9 hypothetical protein compare
PS417_12805 -0.6 -4.7 glycogen branching protein compare
PS417_08580 -0.6 -2.5 histidine kinase compare
PS417_27075 -0.6 -1.5 thiol-disulfide isomerase compare
PS417_25270 -0.6 -1.8 NrdR family transcriptional regulator compare
PS417_10405 -0.6 -0.8 filamentous hemagglutinin compare
PS417_03145 -0.6 -0.9 acetyl-CoA acetyltransferase compare
PS417_27245 -0.6 -1.3 aminotransferase DegT compare
PS417_03465 -0.6 -0.8 type III secretion protein compare
PS417_19425 -0.6 -0.8 allantoicase compare
PS417_05815 -0.6 -2.1 recombinase RecA compare
PS417_14550 -0.6 -1.7 acetylpolyamine aminohydrolase compare
PS417_26470 -0.6 -1.3 cytochrome C compare
PS417_07575 -0.6 -2.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_06695 -0.6 -3.2 4-hydroxybenzoate transporter compare
PS417_13525 -0.6 -2.2 membrane protein compare
PS417_00385 -0.6 -0.8 Fur family transcriptional regulator compare
PS417_16510 -0.6 -2.1 Clp protease ClpX compare
PS417_22840 -0.6 -1.0 tRNA-Met compare
PS417_01685 -0.6 -1.3 membrane protein compare
PS417_18265 -0.6 -1.3 AsnC family transcriptional regulator compare
PS417_12595 -0.6 -0.8 transcriptional regulator compare
PS417_02385 -0.6 -0.9 esterase compare
PS417_27295 -0.6 -2.9 hypothetical protein compare
PS417_06200 -0.6 -2.5 protein-PII uridylyltransferase compare
PS417_00220 -0.6 -1.0 hypothetical protein compare
PS417_07140 -0.6 -2.0 peptidase M48 compare
PS417_25390 -0.6 -2.2 MFS transporter compare
PS417_21070 -0.6 -1.4 aconitate hydratase compare
PS417_12795 -0.6 -3.9 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_24315 -0.6 -2.6 catalase compare
PS417_16390 -0.6 -3.6 peroxiredoxin compare
PS417_09325 -0.6 -2.0 peptidase S41 compare
PS417_11810 -0.6 -1.5 oxidoreductase compare
PS417_08685 -0.6 -1.0 flagellar hook-length control protein FliK compare
PS417_21000 -0.6 -1.2 CrfX protein compare
PS417_12855 -0.5 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25730 -0.5 -3.3 phosphoglycolate phosphatase compare
PS417_02370 -0.5 -1.3 ADP-ribose pyrophosphatase compare
PS417_03705 -0.5 -2.3 2-alkenal reductase compare
PS417_16255 -0.5 -2.0 RNA polymerase sigma factor compare
PS417_15095 -0.5 -1.8 hypothetical protein compare
PS417_21105 -0.5 -3.0 aminodeoxychorismate synthase compare
PS417_18355 -0.5 -3.7 DNA-binding protein compare
PS417_12175 -0.5 -2.3 peptide ABC transporter permease compare
PS417_01185 -0.5 -1.7 ribosomal protein S6 modification protein compare
PS417_01270 -0.5 -1.2 iron ABC transporter substrate-binding protein compare
PS417_18545 -0.5 -1.6 cell division protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms