Experiment set32S564 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -3.8 -3.5 hypothetical protein compare
PS417_02880 -3.6 -1.7 copper chaperone compare
PS417_03260 -3.0 -1.5 5S ribosomal RNA compare
PS417_16555 -2.9 -2.8 cupin compare
PS417_23915 -2.8 -2.5 pantoate--beta-alanine ligase compare
PS417_09590 -2.7 -8.5 membrane protein compare
PS417_04365 -2.6 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06680 -2.6 -5.7 nuclease PIN compare
PS417_27195 -2.4 -1.4 N-acetylglutamate synthase compare
PS417_23380 -2.4 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_01855 -2.4 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_01560 -2.4 -3.9 imidazoleglycerol-phosphate dehydratase compare
PS417_26990 -2.3 -1.2 RNA pyrophosphohydrolase compare
PS417_19350 -2.2 -5.6 GTP cyclohydrolase compare
PS417_13510 -2.2 -1.7 polyketide cyclase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_21480 -1.8 -1.6 23S rRNA pseudouridylate synthase compare
PS417_05595 -1.8 -8.3 ornithine carbamoyltransferase compare
PS417_21630 -1.7 -2.3 magnesium transporter compare
PS417_10645 -1.7 -4.8 magnesium ABC transporter ATPase compare
PS417_09600 -1.6 -3.5 glycosyl transferase family 1 compare
PS417_26775 -1.5 -7.9 thiazole synthase compare
PS417_02975 -1.5 -5.0 3-dehydroquinate dehydratase compare
PS417_02555 -1.5 -8.5 exoribonuclease R compare
PS417_07710 -1.5 -2.8 membrane protein compare
PS417_04385 -1.4 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_09595 -1.4 -5.0 membrane protein compare
PS417_08540 -1.3 -2.4 RNA helicase compare
PS417_06895 -1.3 -3.8 DNA-binding protein compare
PS417_01575 -1.3 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22445 -1.3 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_09585 -1.3 -6.4 acetyltransferase compare
PS417_22450 -1.3 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_27795 -1.3 -0.7 orotate phosphoribosyltransferase compare
PS417_03830 -1.3 -7.0 protein disaggregation chaperone compare
PS417_27870 -1.3 -2.0 ATP-dependent DNA helicase RecG compare
PS417_23805 -1.3 -3.0 acetolactate synthase 3 regulatory subunit compare
PS417_09605 -1.3 -2.5 glycosyl transferase compare
PS417_23385 -1.2 -7.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_04390 -1.2 -2.4 toluene tolerance protein compare
PS417_27425 -1.2 -4.5 exopolyphosphatase compare
PS417_23370 -1.2 -2.4 protoheme IX farnesyltransferase compare
PS417_09615 -1.1 -4.9 glycosyl transferase family 1 compare
PS417_10675 -1.1 -1.3 TetR family transcriptional regulator compare
PS417_06735 -1.1 -1.6 3-oxoadipate enol-lactonase compare
PS417_24600 -1.1 -3.6 hydrogenase compare
PS417_02255 -1.1 -1.6 lipopolysaccharide kinase compare
PS417_01565 -1.1 -3.7 imidazole glycerol phosphate synthase compare
PS417_22535 -1.1 -3.9 ornithine acetyltransferase compare
PS417_03465 -1.0 -1.8 type III secretion protein compare
PS417_02395 -1.0 -3.6 DNA topoisomerase IV subunit B compare
PS417_04420 -1.0 -5.2 histidinol dehydrogenase compare
PS417_20855 -1.0 -1.2 hypothetical protein compare
PS417_28070 -1.0 -4.9 phosphate ABC transporter ATP-binding protein compare
PS417_22840 -1.0 -1.3 tRNA-Met compare
PS417_22570 -1.0 -0.8 H-NS histone compare
PS417_24605 -1.0 -2.4 thiamine-phosphate pyrophosphorylase compare
PS417_00755 -1.0 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_18455 -1.0 -2.2 hypothetical protein compare
PS417_20725 -0.9 -1.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_02510 -0.9 -2.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_03875 -0.9 -1.5 membrane protein compare
PS417_23910 -0.9 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_02705 -0.9 -1.7 urease accessory protein UreF compare
PS417_02870 -0.9 -4.4 TonB-dependent receptor compare
PS417_00185 -0.9 -2.3 tryptophan synthase subunit beta compare
PS417_23810 -0.9 -4.6 acetolactate synthase 3 catalytic subunit compare
PS417_08155 -0.9 -1.2 integration host factor subunit beta compare
PS417_02270 -0.9 -2.7 carbamoyltransferase compare
PS417_25710 -0.9 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_26530 -0.9 -1.1 hypothetical protein compare
PS417_04380 -0.9 -0.7 ABC transporter permease compare
PS417_13165 -0.9 -0.9 peroxidase compare
PS417_16560 -0.8 -1.7 GNAT family acetyltransferase compare
PS417_23390 -0.8 -4.0 ubiquinol oxidase subunit II compare
PS417_19425 -0.8 -1.0 allantoicase compare
PS417_00385 -0.8 -1.1 Fur family transcriptional regulator compare
PS417_23375 -0.8 -1.2 cytochrome C oxidase compare
PS417_02885 -0.8 -1.8 hypothetical protein compare
PS417_02485 -0.8 -1.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02990 -0.8 -2.0 hypothetical protein compare
PS417_00550 -0.8 -1.0 hypothetical protein compare
PS417_27865 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_09625 -0.8 -2.0 sugar ABC transporter substrate-binding protein compare
PS417_01850 -0.8 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01620 -0.8 -1.2 preprotein translocase subunit SecB compare
PS417_20985 -0.8 -0.5 porin compare
PS417_26420 -0.8 -1.3 hypothetical protein compare
PS417_27245 -0.7 -1.3 aminotransferase DegT compare
PS417_19650 -0.7 -2.7 chemotaxis protein CheW compare
PS417_15915 -0.7 -1.4 hypothetical protein compare
PS417_25720 -0.7 -4.4 anthranilate synthase component II compare
PS417_09235 -0.7 -0.9 molecular chaperone compare
PS417_00465 -0.7 -2.7 hypothetical protein compare
PS417_28080 -0.7 -5.7 phosphate ABC transporter permease compare
PS417_00045 -0.7 -1.2 glycerol acyltransferase compare
PS417_19955 -0.7 -1.2 hypothetical protein compare
PS417_10265 -0.7 -1.5 peptidase compare
PS417_22575 -0.7 -3.6 exonuclease I compare
PS417_04340 -0.7 -2.7 ribosome hibernation promoting factor HPF compare
PS417_25730 -0.7 -2.6 phosphoglycolate phosphatase compare
PS417_06335 -0.7 -1.1 S-formylglutathione hydrolase compare
PS417_08410 -0.7 -0.8 hypothetical protein compare
PS417_00660 -0.7 -2.1 DSBA oxidoreductase compare
PS417_15115 -0.7 -2.5 exonuclease SbcD compare
PS417_18740 -0.7 -2.5 acetyltransferase compare
PS417_13990 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_07140 -0.7 -2.0 peptidase M48 compare
PS417_05830 -0.7 -1.7 hypothetical protein compare
PS417_17675 -0.7 -1.4 ABC transporter compare
PS417_15135 -0.7 -1.0 hypothetical protein compare
PS417_21430 -0.7 -0.7 3-oxoacyl-ACP synthase compare
PS417_15325 -0.7 -1.1 type VI secretion protein compare
PS417_21090 -0.7 -1.3 hypothetical protein compare
PS417_04305 -0.7 -0.9 aspartate ammonia-lyase compare
PS417_10095 -0.7 -1.6 hypothetical protein compare
PS417_10815 -0.7 -2.8 TetR family transcriptional regulator compare
PS417_21355 -0.7 -2.0 hypothetical protein compare
PS417_16520 -0.7 -1.3 cold-shock protein compare
PS417_17645 -0.7 -1.2 RND transporter compare
PS417_10405 -0.7 -0.9 filamentous hemagglutinin compare
PS417_05865 -0.7 -1.6 hypothetical protein compare
PS417_09830 -0.7 -2.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_04800 -0.7 -1.9 alginate O-acetyltransferase compare
PS417_22875 -0.7 -1.4 hypothetical protein compare
PS417_27605 -0.6 -3.9 hypothetical protein compare
PS417_19850 -0.6 -3.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_02895 -0.6 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_09210 -0.6 -1.2 TetR family transcriptional regulator compare
PS417_22895 -0.6 -4.0 tyrosine recombinase XerD compare
PS417_27075 -0.6 -1.7 thiol-disulfide isomerase compare
PS417_07615 -0.6 -2.4 TetR family transcriptional regulator compare
PS417_06500 -0.6 -1.1 hypothetical protein compare
PS417_09420 -0.6 -1.2 LysR family transcriptional regulator compare
PS417_24560 -0.6 -1.4 ferrous iron transporter compare
PS417_27640 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_27665 -0.6 -2.7 diguanylate cyclase compare
PS417_15510 -0.6 -1.3 hypothetical protein compare
PS417_04270 -0.6 -3.4 ribonuclease G compare
PS417_02360 -0.6 -2.3 nitrate reductase compare
PS417_27040 -0.6 -0.9 3-phosphoglycerate dehydrogenase compare
PS417_19645 -0.6 -1.4 chemotaxis protein compare
PS417_11925 -0.6 -1.7 hypothetical protein compare
PS417_07695 -0.6 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_14305 -0.6 -1.9 hydroxyproline-2-epimerase compare
PS417_17155 -0.6 -1.5 cytochrome B561 compare
PS417_21105 -0.6 -2.7 aminodeoxychorismate synthase compare
PS417_02770 -0.6 -2.0 membrane protein compare
PS417_22400 -0.6 -4.2 7-cyano-7-deazaguanine synthase compare
PS417_08025 -0.6 -0.7 acetylornithine aminotransferase compare
PS417_02165 -0.6 -2.0 ZapA compare
PS417_08580 -0.6 -2.3 histidine kinase compare
PS417_04415 -0.6 -2.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23995 -0.6 -0.6 preprotein translocase subunit SecG compare
PS417_10105 -0.6 -2.4 hypothetical protein compare
PS417_05985 -0.6 -0.9 chemotaxis protein CheY compare
PS417_06200 -0.6 -2.3 protein-PII uridylyltransferase compare
PS417_09085 -0.6 -1.0 hypothetical protein compare
PS417_21830 -0.6 -1.3 TetR family transcriptional regulator compare
PS417_01605 -0.6 -0.6 phosphoglycerate mutase compare
PS417_18865 -0.6 -2.8 hypothetical protein compare
PS417_23900 -0.6 -3.3 poly(A) polymerase compare
PS417_28230 -0.6 -1.5 transcriptional regulator compare
PS417_18055 -0.6 -0.9 general secretion pathway protein GspK compare
PS417_23775 -0.6 -0.6 exodeoxyribonuclease V subunit beta compare
PS417_21760 -0.5 -1.1 hypothetical protein compare
PS417_08335 -0.5 -1.2 hypothetical protein compare
PS417_02040 -0.5 -0.9 3-hydroxylacyl-ACP dehydratase compare
PS417_22205 -0.5 -2.5 potassium transporter TrkH compare
PS417_24935 -0.5 -0.7 hypothetical protein compare
PS417_02210 -0.5 -2.8 diguanylate cyclase compare
PS417_08680 -0.5 -1.5 flagellar biosynthesis protein FlhB compare
PS417_17980 -0.5 -1.2 ABC transporter permease compare
PS417_08685 -0.5 -1.0 flagellar hook-length control protein FliK compare
PS417_06730 -0.5 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_09620 -0.5 -3.4 lipopolysaccharide biosynthesis protein compare
PS417_21655 -0.5 -0.8 aspartate kinase compare
PS417_08090 -0.5 -0.5 3-oxoacyl-ACP reductase compare
PS417_00655 -0.5 -3.1 DSBA oxidoreductase compare
PS417_02280 -0.5 -0.6 GlcNAc-PI de-N-acetylase compare
PS417_17505 -0.5 -1.7 LuxR family transcriptional regulator compare
PS417_03190 -0.5 -1.4 antibiotic biosynthesis monooxygenase compare
PS417_01570 -0.5 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20950 -0.5 -2.1 hypothetical protein compare
PS417_06445 -0.5 -1.3 iron-siderophore ABC transporter permease compare
PS417_11930 -0.5 -2.4 hypothetical protein compare
PS417_15540 -0.5 -1.0 NUDIX hydrolase compare
PS417_15095 -0.5 -1.2 hypothetical protein compare
PS417_05010 -0.5 -1.0 IclR family transcriptional regulator compare
PS417_16510 -0.5 -2.2 Clp protease ClpX compare
PS417_02160 -0.5 -0.8 hypothetical protein compare
PS417_01920 -0.5 -0.6 ATP-dependent protease subunit HslV compare
PS417_24460 -0.5 -1.3 hypothetical protein compare
PS417_17755 -0.5 -1.4 hypothetical protein compare
PS417_06205 -0.5 -2.9 methionine aminopeptidase compare
PS417_06620 -0.5 -0.9 hypothetical protein compare
PS417_19835 -0.5 -1.1 flagellar biosynthesis protein FliS compare
PS417_19065 -0.5 -0.6 monooxygenase compare
PS417_14850 -0.5 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms