Experiment set32S564 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; solid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_10720 +1.7 10.1 chemotaxis protein CheY compare
PS417_16370 +1.6 9.7 chemotaxis protein CheY compare
PS417_19825 +1.6 14.8 ATPase AAA compare
PS417_08230 +1.4 4.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_06945 +1.2 3.0 membrane protein compare
PS417_20635 +1.2 2.5 ABC transporter ATP-binding protein compare
PS417_20650 +1.2 9.0 hypothetical protein compare
PS417_27135 +1.1 1.4 glutamine synthetase compare
PS417_27945 +1.1 2.7 type VI secretion protein ImpA compare
PS417_20715 +1.1 2.1 cytochrome Cbb3 compare
PS417_08185 +1.1 4.1 glycosyl transferase compare
PS417_19560 +1.0 7.6 amino acid ABC transporter substrate-binding protein compare
PS417_17945 +1.0 1.6 hypothetical protein compare
PS417_08220 +1.0 1.8 epimerase compare
PS417_27940 +1.0 2.9 type VI secretion protein compare
PS417_08205 +0.9 3.8 acetyltransferase compare
PS417_08190 +0.9 7.9 membrane protein compare
PS417_00960 +0.9 3.5 transcriptional regulator compare
PS417_20660 +0.9 6.6 hypothetical protein compare
PS417_20670 +0.9 5.2 glycosyl transferase family 2 compare
PS417_01405 +0.9 3.3 sugar transporter compare
PS417_27005 +0.9 1.8 membrane protein compare
PS417_01115 +0.9 2.0 serine acetyltransferase compare
PS417_26175 +0.9 1.5 sarcosine oxidase subunit gamma compare
PS417_01390 +0.9 6.3 PbsX family transcriptional regulator compare
PS417_04375 +0.9 1.7 ABC transporter ATP-binding protein compare
PS417_27155 +0.9 1.6 aliphatic sulfonates transport ATP-binding subunit compare
PS417_20655 +0.9 6.4 group 1 glycosyl transferase compare
PS417_11510 +0.8 2.2 AraC family transcriptional regulator compare
PS417_01415 +0.8 6.6 glycosyl transferase family 1 compare
PS417_22990 +0.8 2.1 iron dicitrate transport regulator FecR compare
PS417_08195 +0.8 5.3 hypothetical protein compare
PS417_26120 +0.8 1.8 hypothetical protein compare
PS417_28265 +0.8 1.0 pyridoxamine kinase compare
PS417_24885 +0.8 2.4 transcriptional regulator compare
PS417_11945 +0.7 2.4 hypothetical protein compare
PS417_24355 +0.7 2.0 MFS transporter compare
PS417_01410 +0.7 4.8 transporter compare
PS417_17070 +0.7 2.0 RNA polymerase subunit sigma-24 compare
PS417_23580 +0.7 1.3 peptidylprolyl isomerase compare
PS417_01395 +0.7 6.3 biofilm formation protein PelB compare
PS417_01420 +0.7 6.2 histidine kinase compare
PS417_08320 +0.7 2.3 metal-chelation protein CHAD compare
PS417_26645 +0.7 2.1 chemotaxis protein compare
PS417_07620 +0.7 1.5 beta-hexosaminidase compare
PS417_24275 +0.7 5.9 diguanylate phosphodiesterase compare
PS417_01400 +0.7 2.5 hypothetical protein compare
PS417_17590 +0.6 2.3 ABC transporter substrate-binding protein compare
PS417_08200 +0.6 2.6 hypothetical protein compare
PS417_04225 +0.6 3.1 conjugal transfer protein TraR compare
PS417_10245 +0.6 1.2 hypothetical protein compare
PS417_24500 +0.6 1.5 DEAD/DEAH box helicase compare
PS417_03725 +0.6 1.2 acyltransferase compare
PS417_17830 +0.6 1.9 4-hydroxyphenylacetate isomerase compare
PS417_05785 +0.6 2.8 tail protein compare
PS417_20645 +0.6 5.0 membrane protein compare
PS417_19830 +0.6 2.7 flagellar assembly protein FliT compare
PS417_11555 +0.6 2.7 (2Fe-2S)-binding protein compare
PS417_22630 +0.6 1.4 hypothetical protein compare
PS417_23855 +0.6 1.3 ABC transporter substrate-binding protein compare
PS417_00915 +0.6 3.3 aminotransferase compare
PS417_09460 +0.6 2.1 alkanesulfonate monooxygenase compare
PS417_22945 +0.6 1.0 phosphoribosylglycinamide formyltransferase compare
PS417_19275 +0.6 0.8 hypothetical protein compare
PS417_06970 +0.6 1.5 LysR family transcriptional regulator compare
PS417_24615 +0.6 1.3 hypothetical protein compare
PS417_19600 +0.6 0.9 exonuclease compare
PS417_27490 +0.6 1.3 hypothetical protein compare
PS417_27875 +0.6 3.7 histidine kinase compare
PS417_09470 +0.6 1.0 hypothetical protein compare
PS417_11450 +0.5 2.6 AraC family transcriptional regulator compare
PS417_21865 +0.5 1.9 hypothetical protein compare
PS417_24370 +0.5 0.8 (2Fe-2S)-binding protein compare
PS417_06745 +0.5 1.4 polysaccharide deacetylase compare
PS417_00455 +0.5 1.6 hypothetical protein compare
PS417_08225 +0.5 2.3 acetolactate synthase compare
PS417_16855 +0.5 1.0 cation:proton antiporter compare
PS417_00630 +0.5 3.3 nitrate ABC transporter substrate-binding protein compare
PS417_24835 +0.5 3.0 hypothetical protein compare
PS417_20610 +0.5 1.2 hypothetical protein compare
PS417_08150 +0.5 1.5 hypothetical protein compare
PS417_09695 +0.5 1.4 hydrolase compare
PS417_19095 +0.5 0.8 hypothetical protein compare
PS417_26295 +0.5 1.4 gamma-butyrobetaine dioxygenase compare
PS417_22640 +0.5 1.7 cytochrome C biogenesis protein CcmE compare
PS417_03100 +0.5 0.9 pilus assembly protein compare
PS417_03120 +0.5 2.0 histidine kinase compare
PS417_18885 +0.5 1.0 GntR family transcriptional regulator compare
PS417_20025 +0.5 1.1 alpha-ribazole phosphatase compare
PS417_16160 +0.5 1.0 ABC transporter substrate-binding protein compare
PS417_18200 +0.5 1.2 glyoxalase compare
PS417_18130 +0.5 2.3 ABC transporter substrate-binding protein compare
PS417_05120 +0.5 1.7 RNA polymerase subunit sigma-24 compare
PS417_23135 +0.5 0.8 GTP-binding protein compare
PS417_15215 +0.5 1.2 protein activator of alkane oxidation PraA compare
PS417_11800 +0.5 3.1 LysR family transcriptional regulator compare
PS417_13100 +0.5 2.0 ABC transporter ATP-binding protein compare
PS417_20785 +0.5 1.2 transcriptional regulator compare
PS417_03385 +0.5 0.9 flavin reductase compare
PS417_00355 +0.5 1.7 metal ABC transporter permease compare
PS417_14940 +0.5 1.3 LysR family transcriptional regulator compare
PS417_19555 +0.5 2.3 RNA polymerase sigma70 compare
PS417_13095 +0.5 3.1 MFS transporter compare
PS417_17470 +0.4 1.8 LuxR family transcriptional regulator compare
PS417_18010 +0.4 2.3 acid phosphatase compare
PS417_06685 +0.4 0.6 beta-ketoadipyl CoA thiolase compare
PS417_09720 +0.4 3.1 methyltransferase compare
PS417_18490 +0.4 1.7 hypothetical protein compare
PS417_10710 +0.4 1.2 GNAT family acetyltransferase compare
PS417_08465 +0.4 2.5 elongation factor GreAB compare
PS417_20665 +0.4 2.2 hypothetical protein compare
PS417_22780 +0.4 1.0 XRE family transcriptional regulator compare
PS417_13855 +0.4 1.0 acetyl-CoA acetyltransferase compare
PS417_03655 +0.4 1.8 short-chain dehydrogenase compare
PS417_02080 +0.4 2.0 histidine ammonia-lyase compare
PS417_12660 +0.4 1.0 hypothetical protein compare
PS417_25705 +0.4 2.2 lipoate--protein ligase compare
PS417_19285 +0.4 0.8 ankyrin compare
PS417_14280 +0.4 1.6 hypothetical protein compare
PS417_01790 +0.4 2.9 glucan biosynthesis protein G compare
PS417_27900 +0.4 1.0 ABC transporter ATP-binding protein compare
PS417_14580 +0.4 1.9 saccharopine dehydrogenase compare
PS417_23570 +0.4 1.9 hypothetical protein compare
PS417_01795 +0.4 3.7 glucosyltransferase MdoH compare
PS417_13735 +0.4 0.9 hypothetical protein compare
PS417_19200 +0.4 1.0 fumarate hydratase compare
PS417_17705 +0.4 0.9 LacI family transcriptional regulator compare
PS417_00650 +0.4 0.6 LysR family transcriptional regulator compare
PS417_28280 +0.4 1.6 hypothetical protein compare
PS417_03045 +0.4 1.0 hypothetical protein compare
PS417_11480 +0.4 1.7 hypothetical protein compare
PS417_25105 +0.4 2.3 hypothetical protein compare
PS417_14810 +0.4 0.9 Fosmidomycin resistance protein compare
PS417_07275 +0.4 1.5 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_18250 +0.4 1.5 chemotaxis protein compare
PS417_25120 +0.4 2.7 capsular biosynthesis protein compare
PS417_00625 +0.4 2.6 taurine dioxygenase compare
PS417_20520 +0.4 2.1 3-phosphoglycerate kinase compare
PS417_11075 +0.4 1.9 hydroxypyruvate isomerase compare
PS417_12455 +0.4 1.1 hydrolase compare
PS417_14870 +0.4 2.3 transporter compare
PS417_18765 +0.4 2.2 hypothetical protein compare
PS417_15305 +0.4 1.7 type VI secretion protein compare
PS417_26725 +0.4 1.9 hypothetical protein compare
PS417_27935 +0.4 0.9 type VI secretion protein compare
PS417_02385 +0.4 1.0 esterase compare
PS417_04220 +0.4 0.8 4-carboxymuconolactone decarboxylase compare
PS417_23535 +0.4 1.6 glutathione peroxidase compare
PS417_13895 +0.4 1.8 chemotaxis protein CheB compare
PS417_20170 +0.4 1.8 hypothetical protein compare
PS417_11185 +0.4 0.8 dimethylallyltransferase compare
PS417_25155 +0.4 0.8 hypothetical protein compare
PS417_09215 +0.4 2.0 MFS transporter compare
PS417_27085 +0.4 1.2 AraC family transcriptional regulator compare
PS417_01140 +0.4 1.3 taurine ABC transporter permease compare
PS417_22230 +0.4 1.5 class I peptide chain release factor compare
PS417_21670 +0.4 1.6 6,7-dimethyl-8-ribityllumazine synthase compare
PS417_05760 +0.4 2.4 phage tail protein compare
PS417_11445 +0.4 1.7 enoyl-CoA hydratase compare
PS417_28315 +0.4 1.6 zinc ABC transporter permease compare
PS417_26365 +0.4 1.1 EmrB/QacA subfamily drug resistance transporter compare
PS417_01385 +0.4 1.6 NAD-dependent dehydratase compare
PS417_26225 +0.4 2.0 electron transfer flavoprotein subunit beta compare
PS417_09020 +0.4 1.0 esterase compare
PS417_05235 +0.4 1.2 peptidase inhibitor I42 compare
PS417_04985 +0.4 1.4 ketosteroid isomerase compare
PS417_12765 +0.4 1.3 oxidoreductase compare
PS417_25645 +0.4 1.9 peptidase M23 compare
PS417_05905 +0.4 0.5 hypothetical protein compare
PS417_18225 +0.4 2.0 phenol degradation protein meta compare
PS417_20845 +0.4 2.0 hypothetical protein compare
PS417_28275 +0.4 1.6 cobalamin biosynthesis protein CobW compare
PS417_27100 +0.4 1.5 phosphohydrolase compare
PS417_01145 +0.4 0.6 taurine transporter ATP-binding subunit compare
PS417_11900 +0.4 2.9 conjugal transfer protein TraR compare
PS417_24225 +0.4 1.3 hypothetical protein compare
PS417_04650 +0.4 0.2 D-alanine--D-alanine ligase compare
PS417_11455 +0.4 1.6 hypothetical protein compare
PS417_03495 +0.4 0.9 type III secretory protein EscS compare
PS417_25225 +0.4 1.1 MFS transporter compare
PS417_02155 +0.4 1.6 chemotaxis protein compare
PS417_25175 +0.4 1.2 hypothetical protein compare
PS417_06030 +0.4 1.3 hypothetical protein compare
PS417_19620 +0.4 1.0 hypothetical protein compare
PS417_20255 +0.4 2.1 copper resistance protein CopB compare
PS417_22150 +0.4 1.2 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_06120 +0.4 2.0 hypothetical protein compare
PS417_16190 +0.4 1.6 bile acid:sodium symporter compare
PS417_21780 +0.4 1.3 argininosuccinate lyase compare
PS417_13395 +0.4 2.7 phosphoglucomutase compare
PS417_26445 +0.4 0.6 ArsR family transcriptional regulator compare
PS417_19030 +0.4 1.0 sodium:dicarboxylate symporter compare
PS417_12065 +0.4 2.5 xylitol ABC transporter, ATPase component (from data) compare
PS417_20340 +0.4 1.0 hypothetical protein compare
PS417_08545 +0.4 0.8 aromatic ring-opening dioxygenase LigB compare
PS417_21220 +0.4 1.6 acetyl-CoA acetyltransferase compare
PS417_22870 +0.4 1.2 lipoprotein compare
PS417_14815 +0.4 1.0 diguanylate cyclase compare
PS417_15890 +0.4 0.9 RNA polymerase sigma factor compare
PS417_24125 +0.4 1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms