Experiment set32S563 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -4.1 -3.1 hypothetical protein compare
PS417_23915 -3.6 -5.1 pantoate--beta-alanine ligase compare
PS417_16490 -3.4 -1.9 cell division protein FtsK compare
PS417_27795 -3.2 -1.3 orotate phosphoribosyltransferase compare
PS417_13510 -2.8 -1.9 polyketide cyclase compare
PS417_04365 -2.7 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04380 -2.5 -1.7 ABC transporter permease compare
PS417_16555 -2.2 -2.6 cupin compare
PS417_26730 -2.2 -1.2 pyrroline-5-carboxylate reductase compare
PS417_06680 -2.1 -5.5 nuclease PIN compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.0 -0.8 prephenate dehydratase compare
PS417_09470 -2.0 -2.1 hypothetical protein compare
PS417_22565 -2.0 -0.8 formyltetrahydrofolate deformylase compare
PS417_09590 -2.0 -6.3 membrane protein compare
PS417_22570 -1.9 -1.3 H-NS histone compare
PS417_27870 -1.8 -2.7 ATP-dependent DNA helicase RecG compare
PS417_10645 -1.7 -5.1 magnesium ABC transporter ATPase compare
PS417_09600 -1.7 -5.5 glycosyl transferase family 1 compare
PS417_03560 -1.7 -1.9 GTP-binding protein compare
PS417_02555 -1.6 -8.6 exoribonuclease R compare
PS417_21430 -1.6 -1.8 3-oxoacyl-ACP synthase compare
PS417_02485 -1.6 -3.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23810 -1.6 -8.2 acetolactate synthase 3 catalytic subunit compare
PS417_23805 -1.5 -4.6 acetolactate synthase 3 regulatory subunit compare
PS417_10025 -1.5 -2.4 bacteriophage lambda NinG family protein compare
PS417_08090 -1.5 -1.2 3-oxoacyl-ACP reductase compare
PS417_02270 -1.5 -4.2 carbamoyltransferase compare
PS417_09595 -1.5 -6.6 membrane protein compare
PS417_08410 -1.5 -2.8 hypothetical protein compare
PS417_00510 -1.4 -1.2 membrane protein compare
PS417_21480 -1.3 -1.6 23S rRNA pseudouridylate synthase compare
PS417_09210 -1.3 -2.3 TetR family transcriptional regulator compare
PS417_26990 -1.3 -1.0 RNA pyrophosphohydrolase compare
PS417_13165 -1.3 -1.5 peroxidase compare
PS417_28070 -1.3 -7.4 phosphate ABC transporter ATP-binding protein compare
PS417_19755 -1.2 -2.4 flagellar motor switch protein FliM compare
PS417_08170 -1.2 -6.9 capsular biosynthesis protein compare
PS417_02255 -1.2 -1.7 lipopolysaccharide kinase compare
PS417_09615 -1.2 -4.2 glycosyl transferase family 1 compare
PS417_02880 -1.2 -1.7 copper chaperone compare
PS417_27425 -1.2 -4.2 exopolyphosphatase compare
PS417_19955 -1.2 -2.0 hypothetical protein compare
PS417_06145 -1.2 -1.4 hypothetical protein compare
PS417_01605 -1.2 -1.2 phosphoglycerate mutase compare
PS417_23370 -1.1 -3.8 protoheme IX farnesyltransferase compare
PS417_27865 -1.1 -1.9 LysR family transcriptional regulator compare
PS417_09625 -1.1 -2.9 sugar ABC transporter substrate-binding protein compare
PS417_09585 -1.1 -4.8 acetyltransferase compare
PS417_26775 -1.1 -3.7 thiazole synthase compare
PS417_24600 -1.0 -4.5 hydrogenase compare
PS417_00045 -1.0 -1.6 glycerol acyltransferase compare
PS417_07710 -1.0 -2.3 membrane protein compare
PS417_03830 -1.0 -5.3 protein disaggregation chaperone compare
PS417_19835 -1.0 -1.9 flagellar biosynthesis protein FliS compare
PS417_01915 -0.9 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_07140 -0.9 -2.1 peptidase M48 compare
PS417_02575 -0.9 -1.9 membrane protein compare
PS417_27595 -0.9 -1.6 recombinase XerC compare
PS417_02975 -0.9 -2.5 3-dehydroquinate dehydratase compare
PS417_27195 -0.9 -1.3 N-acetylglutamate synthase compare
PS417_23900 -0.9 -5.0 poly(A) polymerase compare
PS417_23390 -0.9 -4.6 ubiquinol oxidase subunit II compare
PS417_23385 -0.9 -4.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_04270 -0.9 -3.7 ribonuclease G compare
PS417_03455 -0.9 -1.1 type III secretion protein compare
PS417_19850 -0.9 -5.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_15450 -0.9 -3.1 ABC transporter permease compare
PS417_09605 -0.8 -2.2 glycosyl transferase compare
PS417_14980 -0.8 -1.2 universal stress protein UspA compare
PS417_19805 -0.8 -2.2 flagellar M-ring protein FliF compare
PS417_21955 -0.8 -2.8 dehydrogenase compare
PS417_06205 -0.8 -4.9 methionine aminopeptidase compare
PS417_13545 -0.8 -1.3 arginine aminotransferase compare
PS417_11705 -0.8 -4.3 cyclic peptide transporter compare
PS417_28080 -0.8 -5.6 phosphate ABC transporter permease compare
PS417_19350 -0.8 -2.4 GTP cyclohydrolase compare
PS417_23910 -0.8 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_17645 -0.8 -0.9 RND transporter compare
PS417_18040 -0.8 -1.6 general secretion pathway protein GspN compare
PS417_19655 -0.8 -2.9 chemotaxis protein CheW compare
PS417_20985 -0.8 -0.5 porin compare
PS417_22445 -0.8 -1.8 ATP-dependent DNA helicase RuvB compare
PS417_26685 -0.8 -1.5 hypothetical protein compare
PS417_05500 -0.8 -2.4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_07565 -0.8 -1.5 hypothetical protein compare
PS417_07305 -0.8 -1.6 3-beta hydroxysteroid dehydrogenase compare
PS417_11725 -0.8 -2.2 peptidase M19 compare
PS417_27245 -0.8 -1.6 aminotransferase DegT compare
PS417_10680 -0.8 -2.1 enoyl-CoA hydratase compare
PS417_22895 -0.8 -4.9 tyrosine recombinase XerD compare
PS417_04385 -0.8 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_04390 -0.8 -1.9 toluene tolerance protein compare
PS417_10425 -0.7 -1.2 hypothetical protein compare
PS417_07640 -0.7 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_12855 -0.7 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21595 -0.7 -2.0 flagellar biosynthesis protein FlgN compare
PS417_26695 -0.7 -1.3 uracil phosphoribosyltransferase compare
PS417_27300 -0.7 -0.7 cell division protein ZapA compare
PS417_20855 -0.7 -0.6 hypothetical protein compare
PS417_12035 -0.7 -2.5 dihydroxyacetone kinase compare
PS417_22620 -0.7 -2.0 pyruvate kinase compare
PS417_14905 -0.7 -1.3 C4-dicarboxylate ABC transporter compare
PS417_28185 -0.7 -2.6 homocysteine methyltransferase compare
PS417_08580 -0.7 -3.1 histidine kinase compare
PS417_22450 -0.7 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_15915 -0.7 -0.9 hypothetical protein compare
PS417_25915 -0.7 -1.1 carbon-nitrogen hydrolase compare
PS417_05865 -0.7 -1.8 hypothetical protein compare
PS417_19675 -0.7 -2.5 chemotaxis protein CheY compare
PS417_22520 -0.7 -0.9 histidine kinase compare
PS417_08685 -0.7 -1.3 flagellar hook-length control protein FliK compare
PS417_01565 -0.7 -2.2 imidazole glycerol phosphate synthase compare
PS417_26275 -0.6 -1.7 glycine/betaine ABC transporter substrate-binding protein compare
PS417_17840 -0.6 -1.9 betaine-aldehyde dehydrogenase compare
PS417_18915 -0.6 -1.3 hypothetical protein compare
PS417_01850 -0.6 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19275 -0.6 -1.1 hypothetical protein compare
PS417_02740 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_09620 -0.6 -4.2 lipopolysaccharide biosynthesis protein compare
PS417_19735 -0.6 -3.1 flagellar biosynthesis protein FliQ compare
PS417_13490 -0.6 -1.5 hypothetical protein compare
PS417_16320 -0.6 -1.8 protein tyrosine phosphatase compare
PS417_16560 -0.6 -1.5 GNAT family acetyltransferase compare
PS417_23375 -0.6 -1.1 cytochrome C oxidase compare
PS417_12705 -0.6 -2.4 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) compare
PS417_01275 -0.6 -2.7 LysR family transcriptional regulator compare
PS417_09570 -0.6 -1.8 GCN5 family acetyltransferase compare
PS417_07470 -0.6 -0.9 hypothetical protein compare
PS417_26420 -0.6 -1.3 hypothetical protein compare
PS417_14400 -0.6 -2.1 hypothetical protein compare
PS417_28225 -0.6 -1.0 hypothetical protein compare
PS417_19125 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_13075 -0.6 -1.2 hypothetical protein compare
PS417_05100 -0.6 -1.3 RNA polymerase sigma factor compare
PS417_00660 -0.6 -1.2 DSBA oxidoreductase compare
PS417_25390 -0.6 -1.9 MFS transporter compare
PS417_19860 -0.6 -4.4 flagellar hook protein FlgL compare
PS417_04585 -0.6 -1.0 hypothetical protein compare
PS417_19600 -0.6 -0.9 exonuclease compare
PS417_17980 -0.6 -1.3 ABC transporter permease compare
PS417_04170 -0.6 -1.8 stringent starvation protein A compare
PS417_19650 -0.6 -2.0 chemotaxis protein CheW compare
PS417_24705 -0.6 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_25720 -0.6 -3.6 anthranilate synthase component II compare
PS417_11545 -0.6 -2.2 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_14530 -0.6 -1.9 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_18445 -0.6 -1.5 glycerol-3-phosphatase compare
PS417_11055 -0.6 -1.5 AraC family transcriptional regulator compare
PS417_00180 -0.6 -1.1 tryptophan synthase subunit alpha compare
PS417_19730 -0.6 -2.5 flagellar biosynthesis protein FliR compare
PS417_15465 -0.6 -1.8 carboxynorspermidine decarboxylase compare
PS417_15805 -0.6 -1.2 transporter compare
PS417_21565 -0.6 -3.4 flagellar basal body rod protein FlgC compare
PS417_09440 -0.6 -1.7 MerR family transcriptional regulator compare
PS417_18455 -0.6 -1.2 hypothetical protein compare
PS417_04865 -0.6 -2.0 molybdenum cofactor biosynthesis protein MoaC compare
PS417_22530 -0.6 -2.0 hypothetical protein compare
PS417_02560 -0.6 -0.8 23S rRNA methyltransferase compare
PS417_10185 -0.6 -2.3 hypothetical protein compare
PS417_12005 -0.6 -1.4 hypothetical protein compare
PS417_18395 -0.6 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_01855 -0.6 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_02210 -0.6 -2.7 diguanylate cyclase compare
PS417_22575 -0.6 -2.5 exonuclease I compare
PS417_07695 -0.6 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_02110 -0.6 -1.3 acyl carrier protein compare
PS417_00385 -0.6 -0.8 Fur family transcriptional regulator compare
PS417_02990 -0.6 -1.5 hypothetical protein compare
PS417_24605 -0.6 -1.7 thiamine-phosphate pyrophosphorylase compare
PS417_05635 -0.6 -2.4 membrane protein compare
PS417_22195 -0.5 -2.3 peptidase compare
PS417_21425 -0.5 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_19790 -0.5 -2.6 ATP synthase compare
PS417_12840 -0.5 -1.5 TetR family transcriptional regulator compare
PS417_12375 -0.5 -1.5 serine/threonine protein phosphatase compare
PS417_21570 -0.5 -2.1 flagellar basal body rod protein FlgB compare
PS417_17680 -0.5 -1.2 ABC transporter compare
PS417_26755 -0.5 -0.9 nucleoside-triphosphate diphosphatase compare
PS417_21600 -0.5 -2.0 pilus assembly protein PilZ compare
PS417_06600 -0.5 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_27075 -0.5 -1.4 thiol-disulfide isomerase compare
PS417_02950 -0.5 -1.9 tRNA-dihydrouridine synthase B compare
PS417_13755 -0.5 -1.7 oxidoreductase compare
PS417_01645 -0.5 -1.1 cupin compare
PS417_05595 -0.5 -3.8 ornithine carbamoyltransferase compare
PS417_15770 -0.5 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_18760 -0.5 -1.5 hypothetical protein compare
PS417_27785 -0.5 -3.1 phosphoglucomutase compare
PS417_16495 -0.5 -1.6 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_03260 -0.5 -0.4 5S ribosomal RNA compare
PS417_28075 -0.5 -2.3 phosphate ABC transporter permease compare
PS417_05200 -0.5 -1.7 DNA recombination protein RecO compare
PS417_14140 -0.5 -1.1 membrane protein compare
PS417_12870 -0.5 -1.0 enoyl-CoA hydratase compare
PS417_21630 -0.5 -0.8 magnesium transporter compare
PS417_27205 -0.5 -1.1 adenylate cyclase compare
PS417_14065 -0.5 -2.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_09915 -0.5 -1.0 hypothetical protein compare
PS417_23250 -0.5 -1.8 S-adenosylmethionine tRNA ribosyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms