Experiment set32S562 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 0.5 mM; solid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_16370 +2.1 14.0 chemotaxis protein CheY compare
PS417_10720 +2.1 14.5 chemotaxis protein CheY compare
PS417_18310 +1.8 2.4 hypothetical protein compare
PS417_08230 +1.5 5.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_19560 +1.5 11.6 amino acid ABC transporter substrate-binding protein compare
PS417_24885 +1.4 5.7 transcriptional regulator compare
PS417_28265 +1.3 1.8 pyridoxamine kinase compare
PS417_22210 +1.2 3.8 AraC family transcriptional regulator compare
PS417_09930 +1.2 2.2 hypothetical protein compare
PS417_08245 +1.0 1.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_20660 +1.0 7.1 hypothetical protein compare
PS417_08190 +1.0 8.1 membrane protein compare
PS417_20655 +0.9 7.3 group 1 glycosyl transferase compare
PS417_20670 +0.9 5.9 glycosyl transferase family 2 compare
PS417_08205 +0.9 4.4 acetyltransferase compare
PS417_23755 +0.9 2.3 membrane protein compare
PS417_20635 +0.9 1.7 ABC transporter ATP-binding protein compare
PS417_02560 +0.9 2.0 23S rRNA methyltransferase compare
PS417_06600 +0.9 1.5 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_20650 +0.8 6.6 hypothetical protein compare
PS417_08185 +0.8 3.0 glycosyl transferase compare
PS417_26175 +0.8 1.3 sarcosine oxidase subunit gamma compare
PS417_04475 +0.8 2.7 hypothetical protein compare
PS417_13800 +0.8 1.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_17035 +0.8 1.7 Cro/Cl family transcriptional regulator compare
PS417_06945 +0.8 1.4 membrane protein compare
PS417_11865 +0.8 2.6 xylose isomerase compare
PS417_19555 +0.8 3.1 RNA polymerase sigma70 compare
PS417_02280 +0.8 0.7 GlcNAc-PI de-N-acetylase compare
PS417_20715 +0.8 2.0 cytochrome Cbb3 compare
PS417_03080 +0.7 1.4 hypothetical protein compare
PS417_15750 +0.7 1.6 protease compare
PS417_11445 +0.7 4.0 enoyl-CoA hydratase compare
PS417_20645 +0.7 5.2 membrane protein compare
PS417_08195 +0.7 4.3 hypothetical protein compare
PS417_15480 +0.7 1.9 ABC transporter substrate-binding protein compare
PS417_20785 +0.7 2.5 transcriptional regulator compare
PS417_04585 +0.7 1.4 hypothetical protein compare
PS417_05975 +0.7 0.8 chemotaxis protein CheW compare
PS417_18690 +0.7 2.0 aromatic amino acid aminotransferase compare
PS417_13580 +0.7 3.0 AraC family transcriptional regulator compare
PS417_03725 +0.7 1.4 acyltransferase compare
PS417_01920 +0.6 0.9 ATP-dependent protease subunit HslV compare
PS417_13640 +0.6 2.0 ribose ABC transporter permease compare
PS417_07840 +0.6 2.9 hypothetical protein compare
PS417_09460 +0.6 1.7 alkanesulfonate monooxygenase compare
PS417_25145 +0.6 1.5 hypothetical protein compare
PS417_00755 +0.6 0.8 biofilm PGA synthesis protein PgaD compare
PS417_10275 +0.6 2.2 histidine kinase compare
PS417_21000 +0.6 1.9 CrfX protein compare
PS417_16160 +0.6 1.2 ABC transporter substrate-binding protein compare
PS417_15935 +0.6 1.2 Rrf2 family transcriptional regulator compare
PS417_19825 +0.6 5.6 ATPase AAA compare
PS417_26145 +0.6 1.5 hypothetical protein compare
PS417_22945 +0.6 1.2 phosphoribosylglycinamide formyltransferase compare
PS417_00450 +0.6 3.2 chemotaxis protein CheY compare
PS417_19030 +0.6 2.4 sodium:dicarboxylate symporter compare
PS417_13735 +0.6 1.3 hypothetical protein compare
PS417_18205 +0.6 1.7 aldehyde dehydrogenase compare
PS417_13185 +0.6 2.1 RND transporter compare
PS417_28280 +0.6 1.3 hypothetical protein compare
PS417_03655 +0.6 2.5 short-chain dehydrogenase compare
PS417_02385 +0.6 1.2 esterase compare
PS417_17070 +0.6 1.2 RNA polymerase subunit sigma-24 compare
PS417_24460 +0.6 2.1 hypothetical protein compare
PS417_16000 +0.6 1.8 chemotaxis protein CheY compare
PS417_19065 +0.6 1.0 monooxygenase compare
PS417_26755 +0.5 1.3 nucleoside-triphosphate diphosphatase compare
PS417_17890 +0.5 2.6 3-oxoacyl-ACP reductase compare
PS417_22630 +0.5 2.0 hypothetical protein compare
PS417_20025 +0.5 0.9 alpha-ribazole phosphatase compare
PS417_27135 +0.5 0.6 glutamine synthetase compare
PS417_00845 +0.5 1.3 transcriptional regulator compare
PS417_23170 +0.5 1.5 FeS assembly protein IscX compare
PS417_07620 +0.5 0.9 beta-hexosaminidase compare
PS417_25105 +0.5 2.8 hypothetical protein compare
PS417_06635 +0.5 1.1 ferredoxin compare
PS417_11510 +0.5 1.3 AraC family transcriptional regulator compare
PS417_08940 +0.5 1.4 thioesterase compare
PS417_26120 +0.5 1.2 hypothetical protein compare
PS417_08225 +0.5 2.7 acetolactate synthase compare
PS417_24355 +0.5 2.4 MFS transporter compare
PS417_13075 +0.5 1.2 hypothetical protein compare
PS417_05905 +0.5 1.3 hypothetical protein compare
PS417_06395 +0.5 1.3 amino acid transporter compare
PS417_17105 +0.5 1.6 spore coat protein compare
PS417_17780 +0.5 1.1 Ais protein compare
PS417_02055 +0.5 2.4 methyltransferase compare
PS417_10105 +0.5 1.1 hypothetical protein compare
PS417_07120 +0.5 2.0 RNA polymerase sigma-H factor compare
PS417_15875 +0.5 1.6 LuxR family transcriptional regulator compare
PS417_03350 +0.5 1.7 cytochrome C peroxidase compare
PS417_25310 +0.5 2.2 hypothetical protein compare
PS417_00180 +0.5 1.4 tryptophan synthase subunit alpha compare
PS417_15160 +0.5 1.6 hypothetical protein compare
PS417_07455 +0.5 1.3 glutamine amidotransferase compare
PS417_02780 +0.5 2.5 DNA-binding protein compare
PS417_19075 +0.5 3.0 ABC transporter ATP-binding protein compare
PS417_13895 +0.5 2.6 chemotaxis protein CheB compare
PS417_24835 +0.5 3.0 hypothetical protein compare
PS417_20665 +0.5 3.0 hypothetical protein compare
PS417_22375 +0.5 0.8 cold-shock protein compare
PS417_25315 +0.5 2.2 membrane protein compare
PS417_11950 +0.5 1.1 hypothetical protein compare
PS417_27680 +0.5 3.0 acetyl-CoA hydrolase compare
PS417_15135 +0.5 0.7 hypothetical protein compare
PS417_00940 +0.5 2.6 sulfate ABC transporter permease compare
PS417_01640 +0.5 2.4 histidine kinase compare
PS417_07560 +0.5 0.5 universal stress protein UspA compare
PS417_12110 +0.5 1.2 ATP-binding protein compare
PS417_26805 +0.5 0.8 cell division protein FtsE compare
PS417_03075 +0.5 1.8 hypothetical protein compare
PS417_04185 +0.5 1.3 hypothetical protein compare
PS417_18920 +0.5 1.7 hypothetical protein compare
PS417_03155 +0.4 2.5 transcriptional regulator compare
PS417_13095 +0.4 3.2 MFS transporter compare
PS417_16400 +0.4 1.1 NAD(P)H-quinone oxidoreductase compare
PS417_05610 +0.4 2.1 bacterioferritin compare
PS417_12870 +0.4 1.2 enoyl-CoA hydratase compare
PS417_13625 +0.4 1.5 cytochrome B561 compare
PS417_13590 +0.4 1.8 histidine kinase compare
PS417_14595 +0.4 2.4 pyrroline-5-carboxylate reductase compare
PS417_14890 +0.4 1.7 LysR family transcriptional regulator compare
PS417_13250 +0.4 1.9 ABC transporter compare
PS417_18755 +0.4 1.4 CrtK compare
PS417_26105 +0.4 1.9 ABC transporter permease compare
PS417_09665 +0.4 1.5 dimethylglycine dehydrogenase compare
PS417_06045 +0.4 0.9 membrane protein compare
PS417_11945 +0.4 1.0 hypothetical protein compare
PS417_26815 +0.4 1.4 peptidase M16 compare
PS417_19125 +0.4 1.2 LysR family transcriptional regulator compare
PS417_02690 +0.4 2.1 N-acylglucosamine 2-epimerase compare
PS417_26720 +0.4 1.8 twitching motility protein PilT compare
PS417_18730 +0.4 1.6 ABC transporter permease compare
PS417_19625 +0.4 1.8 histidine kinase compare
PS417_17980 +0.4 1.0 ABC transporter permease compare
PS417_15885 +0.4 0.7 GCN5 family acetyltransferase compare
PS417_13820 +0.4 1.5 UDP-glucose 6-dehydrogenase compare
PS417_08200 +0.4 1.4 hypothetical protein compare
PS417_08150 +0.4 2.0 hypothetical protein compare
PS417_14295 +0.4 1.7 AraC family transcriptional regulator compare
PS417_14285 +0.4 1.4 hypothetical protein compare
PS417_12160 +0.4 1.4 Fis family transcriptional regulator compare
PS417_10100 +0.4 1.7 hypothetical protein compare
PS417_20795 +0.4 2.0 acyl-CoA dehydrogenase compare
PS417_19095 +0.4 0.8 hypothetical protein compare
PS417_19565 +0.4 2.2 TetR family transcriptional regulator compare
PS417_25175 +0.4 1.2 hypothetical protein compare
PS417_02070 +0.4 0.7 membrane protein compare
PS417_25155 +0.4 0.6 hypothetical protein compare
PS417_03550 +0.4 0.9 hypothetical protein compare
PS417_12490 +0.4 1.2 autotransporter adhesin compare
PS417_07945 +0.4 0.8 hypothetical protein compare
PS417_03015 +0.4 3.0 hypothetical protein compare
PS417_02890 +0.4 1.5 cobalt-precorrin-6X reductase compare
PS417_02020 +0.4 1.7 LysR family transcriptional regulator compare
PS417_22990 +0.4 0.7 iron dicitrate transport regulator FecR compare
PS417_17865 +0.4 2.1 2-keto-3-deoxy-L-rhamnonate aldolase compare
PS417_17240 +0.4 1.3 trigger factor compare
PS417_23490 +0.4 0.5 dihydrofolate reductase compare
PS417_01095 +0.4 0.6 amino acid ABC transporter ATP-binding protein compare
PS417_27040 +0.4 0.8 3-phosphoglycerate dehydrogenase compare
PS417_07595 +0.4 1.7 PasA protein compare
PS417_05055 +0.4 1.2 hypothetical protein compare
PS417_18545 +0.4 1.5 cell division protein compare
PS417_07140 +0.4 1.1 peptidase M48 compare
PS417_18140 +0.4 1.5 hypothetical protein compare
PS417_27160 +0.4 2.0 alkanesulfonate transporter permease subunit compare
PS417_27155 +0.4 0.8 aliphatic sulfonates transport ATP-binding subunit compare
PS417_19490 +0.4 1.4 mechanosensitive ion channel protein compare
PS417_13645 +0.4 1.2 ABC transporter compare
PS417_13795 +0.4 2.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_21855 +0.4 1.2 hypothetical protein compare
PS417_06675 +0.4 1.5 ATP-dependent helicase compare
PS417_27100 +0.4 1.2 phosphohydrolase compare
PS417_24495 +0.4 0.9 NAD(FAD)-utilizing dehydrogenase compare
PS417_12035 +0.4 1.5 dihydroxyacetone kinase compare
PS417_20620 +0.4 2.2 glycosyl transferase family 2 compare
PS417_22660 +0.4 1.0 hypothetical protein compare
PS417_24785 +0.4 1.1 nucleoside-diphosphate sugar epimerase compare
PS417_24575 +0.4 0.8 hypothetical protein compare
PS417_27085 +0.4 1.7 AraC family transcriptional regulator compare
PS417_19550 +0.4 1.5 thioesterase compare
PS417_16775 +0.4 1.1 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_14155 +0.4 1.5 branched-chain amino acid ABC transporter permease compare
PS417_21270 +0.4 1.2 translation initiation factor 2 compare
PS417_20915 +0.4 1.3 hypothetical protein compare
PS417_03470 +0.4 1.2 ATP synthase compare
PS417_06970 +0.4 0.6 LysR family transcriptional regulator compare
PS417_20825 +0.4 1.1 drug:proton antiporter compare
PS417_13335 +0.4 1.0 aldo/keto reductase compare
PS417_00725 +0.4 1.4 RND transporter compare
PS417_00835 +0.4 2.4 hypothetical protein compare
PS417_19135 +0.4 1.1 DeoR faimly transcriptional regulator compare
PS417_13455 +0.4 1.1 alkaline proteinase inhibitor compare
PS417_17590 +0.4 1.0 ABC transporter substrate-binding protein compare
PS417_27405 +0.4 1.8 hypothetical protein compare
PS417_16060 +0.4 1.5 protein tolQ compare
PS417_01885 +0.4 1.5 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_18000 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms