Experiment set32S560 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -3.7 -4.1 pantoate--beta-alanine ligase compare
PS417_06680 -3.3 -5.9 nuclease PIN compare
PS417_28050 -3.1 -2.4 hypothetical protein compare
PS417_09590 -2.7 -4.9 membrane protein compare
PS417_04365 -2.7 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27870 -2.5 -3.4 ATP-dependent DNA helicase RecG compare
PS417_04380 -2.5 -1.7 ABC transporter permease compare
PS417_09615 -2.4 -5.2 glycosyl transferase family 1 compare
PS417_22450 -2.3 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_13510 -2.2 -1.8 polyketide cyclase compare
PS417_26730 -2.2 -1.2 pyrroline-5-carboxylate reductase compare
PS417_02555 -2.1 -11.9 exoribonuclease R compare
PS417_19350 -2.1 -5.4 GTP cyclohydrolase compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_10645 -1.9 -5.0 magnesium ABC transporter ATPase compare
PS417_09625 -1.9 -4.4 sugar ABC transporter substrate-binding protein compare
PS417_09600 -1.8 -6.0 glycosyl transferase family 1 compare
PS417_27425 -1.8 -6.7 exopolyphosphatase compare
PS417_01605 -1.7 -1.6 phosphoglycerate mutase compare
PS417_09595 -1.7 -4.5 membrane protein compare
PS417_27195 -1.7 -1.0 N-acetylglutamate synthase compare
PS417_23805 -1.6 -4.3 acetolactate synthase 3 regulatory subunit compare
PS417_09585 -1.6 -7.4 acetyltransferase compare
PS417_27865 -1.6 -3.5 LysR family transcriptional regulator compare
PS417_23950 -1.6 -2.1 polynucleotide phosphorylase/polyadenylase compare
PS417_22445 -1.6 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_05595 -1.6 -9.6 ornithine carbamoyltransferase compare
PS417_02880 -1.4 -1.9 copper chaperone compare
PS417_02485 -1.4 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04390 -1.4 -2.7 toluene tolerance protein compare
PS417_16555 -1.4 -1.8 cupin compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_24615 -1.3 -1.6 hypothetical protein compare
PS417_23370 -1.3 -3.1 protoheme IX farnesyltransferase compare
PS417_01855 -1.3 -3.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_07615 -1.3 -5.6 TetR family transcriptional regulator compare
PS417_05695 -1.3 -4.6 transcriptional regulator compare
PS417_26605 -1.3 -1.6 malonate decarboxylase subunit beta compare
PS417_23810 -1.3 -6.2 acetolactate synthase 3 catalytic subunit compare
PS417_24600 -1.3 -4.4 hydrogenase compare
PS417_23385 -1.3 -7.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_22895 -1.2 -4.5 tyrosine recombinase XerD compare
PS417_09620 -1.2 -7.0 lipopolysaccharide biosynthesis protein compare
PS417_02975 -1.2 -4.1 3-dehydroquinate dehydratase compare
PS417_26775 -1.1 -7.8 thiazole synthase compare
PS417_23105 -1.1 -1.8 hypothetical protein compare
PS417_01095 -1.1 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_23375 -1.1 -1.7 cytochrome C oxidase compare
PS417_24745 -1.1 -1.8 gamma-glutamyl phosphate reductase compare
PS417_05815 -1.1 -3.9 recombinase RecA compare
PS417_06205 -1.1 -6.2 methionine aminopeptidase compare
PS417_08170 -1.0 -6.2 capsular biosynthesis protein compare
PS417_22840 -1.0 -1.6 tRNA-Met compare
PS417_06355 -1.0 -2.4 protein-L-isoaspartate O-methyltransferase compare
PS417_05975 -1.0 -0.8 chemotaxis protein CheW compare
PS417_27785 -1.0 -5.0 phosphoglucomutase compare
PS417_06075 -1.0 -1.4 hypothetical protein compare
PS417_15095 -1.0 -2.2 hypothetical protein compare
PS417_27245 -1.0 -1.8 aminotransferase DegT compare
PS417_03830 -1.0 -5.5 protein disaggregation chaperone compare
PS417_22375 -1.0 -1.1 cold-shock protein compare
PS417_10245 -1.0 -1.8 hypothetical protein compare
PS417_19665 -0.9 -2.3 flagellar motor protein MotD compare
PS417_11705 -0.9 -5.8 cyclic peptide transporter compare
PS417_27605 -0.9 -4.0 hypothetical protein compare
PS417_02510 -0.9 -3.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08220 -0.9 -1.0 epimerase compare
PS417_01580 -0.9 -1.3 imidazole glycerol phosphate synthase compare
PS417_19095 -0.9 -1.7 hypothetical protein compare
PS417_03300 -0.9 -2.4 alanine acetyltransferase compare
PS417_03560 -0.9 -1.1 GTP-binding protein compare
PS417_24605 -0.9 -1.8 thiamine-phosphate pyrophosphorylase compare
PS417_21480 -0.9 -1.2 23S rRNA pseudouridylate synthase compare
PS417_17155 -0.9 -2.0 cytochrome B561 compare
PS417_09605 -0.9 -1.3 glycosyl transferase compare
PS417_18420 -0.9 -2.4 deoxyribonuclease compare
PS417_19675 -0.9 -3.4 chemotaxis protein CheY compare
PS417_06600 -0.9 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_05820 -0.9 -1.9 recombinase RecX compare
PS417_25720 -0.9 -5.2 anthranilate synthase component II compare
PS417_23910 -0.8 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_28230 -0.8 -2.4 transcriptional regulator compare
PS417_26420 -0.8 -1.2 hypothetical protein compare
PS417_23160 -0.8 -1.1 50S rRNA methyltransferase compare
PS417_08580 -0.8 -3.7 histidine kinase compare
PS417_07820 -0.8 -2.3 transposase compare
PS417_06245 -0.8 -1.0 zinc metallopeptidase RseP compare
PS417_02870 -0.8 -4.1 TonB-dependent receptor compare
PS417_02270 -0.8 -2.0 carbamoyltransferase compare
PS417_04420 -0.8 -4.7 histidinol dehydrogenase compare
PS417_23390 -0.8 -3.6 ubiquinol oxidase subunit II compare
PS417_05865 -0.8 -1.6 hypothetical protein compare
PS417_23900 -0.8 -4.5 poly(A) polymerase compare
PS417_20855 -0.8 -1.0 hypothetical protein compare
PS417_25730 -0.8 -3.5 phosphoglycolate phosphatase compare
PS417_21760 -0.8 -1.3 hypothetical protein compare
PS417_27075 -0.8 -1.7 thiol-disulfide isomerase compare
PS417_02780 -0.8 -4.0 DNA-binding protein compare
PS417_20715 -0.7 -1.2 cytochrome Cbb3 compare
PS417_24385 -0.7 -3.2 tRNA (uracil-5-)-methyltransferase compare
PS417_21425 -0.7 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_09730 -0.7 -2.2 adenylylsulfate kinase compare
PS417_07865 -0.7 -1.8 hypothetical protein compare
PS417_22575 -0.7 -3.5 exonuclease I compare
PS417_09635 -0.7 -5.2 mannose-1-phosphate guanylyltransferase compare
PS417_00550 -0.7 -0.9 hypothetical protein compare
PS417_23825 -0.7 -3.0 penicillin-binding protein compare
PS417_04585 -0.7 -0.9 hypothetical protein compare
PS417_23380 -0.7 -1.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_19190 -0.7 -1.8 BolA family transcriptional regulator compare
PS417_04410 -0.7 -1.5 hypothetical protein compare
PS417_11925 -0.7 -1.8 hypothetical protein compare
PS417_13175 -0.7 -1.3 iron transporter compare
PS417_22040 -0.7 -2.3 GNAT family acetyltransferase compare
PS417_11125 -0.7 -2.0 hypothetical protein compare
PS417_25710 -0.7 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_26990 -0.7 -0.6 RNA pyrophosphohydrolase compare
PS417_22935 -0.7 -1.7 hypothetical protein compare
PS417_15115 -0.7 -3.4 exonuclease SbcD compare
PS417_02395 -0.7 -1.6 DNA topoisomerase IV subunit B compare
PS417_25700 -0.7 -1.6 cyclic AMP receptor protein compare
PS417_06895 -0.7 -2.1 DNA-binding protein compare
PS417_08410 -0.7 -1.3 hypothetical protein compare
PS417_19650 -0.7 -2.7 chemotaxis protein CheW compare
PS417_09830 -0.7 -2.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_15705 -0.7 -1.4 nitrate reductase compare
PS417_26040 -0.7 -2.7 malate synthase compare
PS417_23995 -0.6 -0.6 preprotein translocase subunit SecG compare
PS417_17795 -0.6 -1.2 ABC transporter permease compare
PS417_07620 -0.6 -1.2 beta-hexosaminidase compare
PS417_24705 -0.6 -1.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_05105 -0.6 -2.5 membrane protein compare
PS417_06145 -0.6 -0.9 hypothetical protein compare
PS417_02740 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_00370 -0.6 -0.7 hypothetical protein compare
PS417_25390 -0.6 -2.2 MFS transporter compare
PS417_08685 -0.6 -1.1 flagellar hook-length control protein FliK compare
PS417_18205 -0.6 -1.5 aldehyde dehydrogenase compare
PS417_24570 -0.6 -2.3 AsnC family transcriptional regulator compare
PS417_08540 -0.6 -1.4 RNA helicase compare
PS417_21105 -0.6 -2.8 aminodeoxychorismate synthase compare
PS417_09420 -0.6 -1.3 LysR family transcriptional regulator compare
PS417_07165 -0.6 -1.9 dihydrodipicolinate synthase compare
PS417_03260 -0.6 -0.7 5S ribosomal RNA compare
PS417_19160 -0.6 -2.6 hypothetical protein compare
PS417_12840 -0.6 -2.1 TetR family transcriptional regulator compare
PS417_24935 -0.6 -0.8 hypothetical protein compare
PS417_18310 -0.6 -0.5 hypothetical protein compare
PS417_16490 -0.6 -0.8 cell division protein FtsK compare
PS417_02885 -0.6 -1.2 hypothetical protein compare
PS417_14015 -0.6 -2.2 LysR family transcriptional regulator compare
PS417_15520 -0.6 -2.2 hypothetical protein compare
PS417_01290 -0.6 -1.1 ADP-ribose diphosphatase compare
PS417_05635 -0.6 -3.0 membrane protein compare
PS417_10265 -0.6 -2.2 peptidase compare
PS417_02745 -0.6 -0.7 FMN-dependent NADH-azoreductase compare
PS417_11720 -0.6 -1.2 class V aminotransferase compare
PS417_02225 -0.6 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_26985 -0.6 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04990 -0.6 -1.4 GIY-YIG nuclease compare
PS417_14850 -0.6 -1.9 hypothetical protein compare
PS417_26815 -0.6 -1.5 peptidase M16 compare
PS417_07175 -0.6 -2.2 beta-lactamase compare
PS417_22400 -0.6 -4.2 7-cyano-7-deazaguanine synthase compare
PS417_03000 -0.6 -2.6 translation initiation factor Sui1 compare
PS417_01920 -0.6 -0.7 ATP-dependent protease subunit HslV compare
PS417_02255 -0.6 -1.1 lipopolysaccharide kinase compare
PS417_14245 -0.6 -1.1 hypothetical protein compare
PS417_24070 -0.5 -3.8 recombination and repair protein compare
PS417_01575 -0.5 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04440 -0.5 -1.6 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_07120 -0.5 -1.5 RNA polymerase sigma-H factor compare
PS417_19850 -0.5 -3.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_01185 -0.5 -3.1 ribosomal protein S6 modification protein compare
PS417_27590 -0.5 -2.4 hypothetical protein compare
PS417_22530 -0.5 -2.4 hypothetical protein compare
PS417_26805 -0.5 -0.7 cell division protein FtsE compare
PS417_02355 -0.5 -3.3 thiamine biosynthesis protein ThiC compare
PS417_05210 -0.5 -2.8 copper oxidase compare
PS417_18370 -0.5 -1.0 hypothetical protein compare
PS417_19755 -0.5 -1.2 flagellar motor switch protein FliM compare
PS417_15035 -0.5 -1.1 alkylhydroperoxidase compare
PS417_27585 -0.5 -0.9 diaminopimelate epimerase compare
PS417_23580 -0.5 -1.0 peptidylprolyl isomerase compare
PS417_18845 -0.5 -2.0 peptidase compare
PS417_27840 -0.5 -2.6 hypothetical protein compare
PS417_14605 -0.5 -1.9 adenylate kinase compare
PS417_19800 -0.5 -1.9 flagellar motor switch protein FliG compare
PS417_14045 -0.5 -2.3 alkyl hydroperoxide reductase compare
PS417_16720 -0.5 -0.8 membrane protein compare
PS417_27295 -0.5 -2.5 hypothetical protein compare
PS417_19655 -0.5 -2.6 chemotaxis protein CheW compare
PS417_09865 -0.5 -1.3 hypothetical protein compare
PS417_18025 -0.5 -1.4 cytochrome C compare
PS417_10060 -0.5 -1.0 hypothetical protein compare
PS417_00045 -0.5 -0.9 glycerol acyltransferase compare
PS417_19630 -0.5 -1.2 LuxR family transcriptional regulator compare
PS417_22535 -0.5 -2.4 ornithine acetyltransferase compare
PS417_12910 -0.5 -1.1 alanine racemase compare
PS417_07305 -0.5 -1.3 3-beta hydroxysteroid dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment

For solid stress 80% Methanol in Pseudomonas simiae WCS417

For solid stress 80% Methanol across organisms