Experiment set32S559 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_21430 -3.5 -2.4 3-oxoacyl-ACP synthase compare
PS417_28050 -3.3 -2.9 hypothetical protein compare
PS417_23950 -3.1 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_06680 -3.0 -6.0 nuclease PIN compare
PS417_27195 -2.9 -2.0 N-acetylglutamate synthase compare
PS417_22570 -2.8 -1.3 H-NS histone compare
PS417_23915 -2.7 -4.3 pantoate--beta-alanine ligase compare
PS417_04365 -2.7 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19835 -2.5 -2.4 flagellar biosynthesis protein FliS compare
PS417_09590 -2.3 -5.2 membrane protein compare
PS417_27135 -2.3 -1.1 glutamine synthetase compare
PS417_09600 -2.3 -3.8 glycosyl transferase family 1 compare
PS417_26730 -2.2 -1.0 pyrroline-5-carboxylate reductase compare
PS417_27870 -2.2 -3.2 ATP-dependent DNA helicase RecG compare
PS417_03560 -2.1 -1.9 GTP-binding protein compare
PS417_02555 -2.0 -11.2 exoribonuclease R compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_26775 -1.9 -8.7 thiazole synthase compare
PS417_23810 -1.9 -8.1 acetolactate synthase 3 catalytic subunit compare
PS417_16555 -1.9 -2.0 cupin compare
PS417_08245 -1.9 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_24600 -1.8 -5.3 hydrogenase compare
PS417_19350 -1.7 -4.2 GTP cyclohydrolase compare
PS417_10645 -1.6 -4.2 magnesium ABC transporter ATPase compare
PS417_05975 -1.6 -0.9 chemotaxis protein CheW compare
PS417_23805 -1.6 -4.0 acetolactate synthase 3 regulatory subunit compare
PS417_04380 -1.5 -1.1 ABC transporter permease compare
PS417_23545 -1.5 -1.6 gamma-glutamyl kinase compare
PS417_27425 -1.5 -4.7 exopolyphosphatase compare
PS417_16520 -1.5 -2.7 cold-shock protein compare
PS417_22450 -1.4 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_21480 -1.4 -1.1 23S rRNA pseudouridylate synthase compare
PS417_20855 -1.4 -1.6 hypothetical protein compare
PS417_02975 -1.4 -3.0 3-dehydroquinate dehydratase compare
PS417_09585 -1.4 -7.1 acetyltransferase compare
PS417_27865 -1.3 -2.5 LysR family transcriptional regulator compare
PS417_19665 -1.3 -3.5 flagellar motor protein MotD compare
PS417_19955 -1.3 -1.8 hypothetical protein compare
PS417_28070 -1.3 -6.5 phosphate ABC transporter ATP-binding protein compare
PS417_03260 -1.3 -1.2 5S ribosomal RNA compare
PS417_16490 -1.3 -1.2 cell division protein FtsK compare
PS417_27585 -1.3 -1.4 diaminopimelate epimerase compare
PS417_08170 -1.2 -7.9 capsular biosynthesis protein compare
PS417_09615 -1.2 -3.6 glycosyl transferase family 1 compare
PS417_27435 -1.2 -4.5 polyphosphate kinase compare
PS417_00385 -1.2 -1.3 Fur family transcriptional regulator compare
PS417_15975 -1.1 -2.0 glutamate carboxypeptidase compare
PS417_02485 -1.1 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08410 -1.1 -1.6 hypothetical protein compare
PS417_11705 -1.1 -5.3 cyclic peptide transporter compare
PS417_02365 -1.1 -2.6 hypothetical protein compare
PS417_04390 -1.1 -2.7 toluene tolerance protein compare
PS417_15100 -1.1 -1.5 BatB protein compare
PS417_00455 -1.1 -0.9 hypothetical protein compare
PS417_13710 -1.1 -2.0 hypothetical protein compare
PS417_27785 -1.0 -4.7 phosphoglucomutase compare
PS417_22895 -1.0 -4.2 tyrosine recombinase XerD compare
PS417_28325 -1.0 -1.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_26260 -1.0 -1.3 hypothetical protein compare
PS417_11485 -1.0 -2.1 AraC family transcriptional regulator compare
PS417_12015 -1.0 -2.8 phosphoglycerate mutase compare
PS417_19790 -1.0 -4.1 ATP synthase compare
PS417_16855 -1.0 -1.1 cation:proton antiporter compare
PS417_01620 -1.0 -1.6 preprotein translocase subunit SecB compare
PS417_13165 -1.0 -1.0 peroxidase compare
PS417_02510 -1.0 -1.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19730 -1.0 -2.4 flagellar biosynthesis protein FliR compare
PS417_19850 -1.0 -5.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19675 -1.0 -3.4 chemotaxis protein CheY compare
PS417_20610 -1.0 -1.0 hypothetical protein compare
PS417_24575 -1.0 -1.3 hypothetical protein compare
PS417_20025 -1.0 -1.4 alpha-ribazole phosphatase compare
PS417_06205 -1.0 -4.9 methionine aminopeptidase compare
PS417_02270 -0.9 -2.7 carbamoyltransferase compare
PS417_19800 -0.9 -1.9 flagellar motor switch protein FliG compare
PS417_16510 -0.9 -2.4 Clp protease ClpX compare
PS417_24385 -0.9 -4.1 tRNA (uracil-5-)-methyltransferase compare
PS417_09605 -0.9 -1.5 glycosyl transferase compare
PS417_24370 -0.9 -0.8 (2Fe-2S)-binding protein compare
PS417_24745 -0.9 -1.8 gamma-glutamyl phosphate reductase compare
PS417_03830 -0.9 -4.6 protein disaggregation chaperone compare
PS417_23910 -0.9 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_21425 -0.9 -1.8 4-amino-4-deoxychorismate lyase compare
PS417_10675 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_09595 -0.9 -2.7 membrane protein compare
PS417_19755 -0.9 -1.6 flagellar motor switch protein FliM compare
PS417_23375 -0.9 -1.3 cytochrome C oxidase compare
PS417_24460 -0.9 -1.6 hypothetical protein compare
PS417_27640 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_04270 -0.9 -6.3 ribonuclease G compare
PS417_24675 -0.9 -2.2 lipoyl synthase compare
PS417_02255 -0.9 -1.3 lipopolysaccharide kinase compare
PS417_28080 -0.8 -5.0 phosphate ABC transporter permease compare
PS417_27245 -0.8 -1.7 aminotransferase DegT compare
PS417_09625 -0.8 -1.9 sugar ABC transporter substrate-binding protein compare
PS417_02865 -0.8 -3.4 peptidase compare
PS417_18360 -0.8 -1.5 hypothetical protein compare
PS417_27705 -0.8 -1.3 amino acid dehydrogenase compare
PS417_21625 -0.8 -0.8 DNA-binding protein compare
PS417_05820 -0.8 -2.1 recombinase RecX compare
PS417_04650 -0.8 -0.3 D-alanine--D-alanine ligase compare
PS417_07615 -0.8 -3.3 TetR family transcriptional regulator compare
PS417_09620 -0.8 -4.9 lipopolysaccharide biosynthesis protein compare
PS417_03100 -0.8 -0.9 pilus assembly protein compare
PS417_26850 -0.8 -0.7 twin-arginine translocation pathway signal protein compare
PS417_07640 -0.8 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_26420 -0.8 -1.2 hypothetical protein compare
PS417_26990 -0.8 -0.6 RNA pyrophosphohydrolase compare
PS417_08310 -0.8 -2.7 alpha/beta hydrolase compare
PS417_18600 -0.8 -1.9 isopropylmalate isomerase compare
PS417_18395 -0.8 -1.6 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_26565 -0.8 -2.3 LysR family transcriptional regulator compare
PS417_20985 -0.8 -0.5 porin compare
PS417_02075 -0.8 -2.4 thioesterase compare
PS417_06200 -0.8 -3.5 protein-PII uridylyltransferase compare
PS417_19860 -0.7 -5.9 flagellar hook protein FlgL compare
PS417_00160 -0.7 -1.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_25700 -0.7 -2.1 cyclic AMP receptor protein compare
PS417_01565 -0.7 -2.9 imidazole glycerol phosphate synthase compare
PS417_27595 -0.7 -1.1 recombinase XerC compare
PS417_26985 -0.7 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20725 -0.7 -1.4 cbb3-type cytochrome c oxidase subunit II compare
PS417_23380 -0.7 -1.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_01195 -0.7 -1.4 RNA-binding protein S4 compare
PS417_12310 -0.7 -2.8 methionine synthase compare
PS417_06500 -0.7 -1.2 hypothetical protein compare
PS417_27795 -0.7 -0.4 orotate phosphoribosyltransferase compare
PS417_25030 -0.7 -2.1 hypothetical protein compare
PS417_19795 -0.7 -5.5 flagellar assembly protein FliH compare
PS417_02280 -0.7 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_05815 -0.7 -1.9 recombinase RecA compare
PS417_18435 -0.7 -2.0 hypothetical protein compare
PS417_01030 -0.7 -1.0 glutamine ABC transporter substrate-binding protein compare
PS417_08025 -0.7 -0.5 acetylornithine aminotransferase compare
PS417_02820 -0.7 -0.7 urea ABC transporter ATP-binding protein compare
PS417_06685 -0.7 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_18310 -0.7 -0.5 hypothetical protein compare
PS417_07565 -0.7 -1.3 hypothetical protein compare
PS417_01285 -0.7 -0.8 haloacid dehalogenase compare
PS417_13140 -0.7 -0.9 oxidoreductase compare
PS417_00845 -0.7 -1.1 transcriptional regulator compare
PS417_27305 -0.7 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_08620 -0.7 -0.7 hypothetical protein compare
PS417_10245 -0.6 -1.2 hypothetical protein compare
PS417_01575 -0.6 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19740 -0.6 -3.6 flagellar biosynthesis protein flip compare
PS417_13075 -0.6 -1.3 hypothetical protein compare
PS417_23775 -0.6 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_20365 -0.6 -2.0 Cro/Cl family transcriptional regulator compare
PS417_16870 -0.6 -1.3 short-chain dehydrogenase compare
PS417_23370 -0.6 -1.8 protoheme IX farnesyltransferase compare
PS417_08350 -0.6 -1.4 preprotein translocase subunit TatD compare
PS417_28295 -0.6 -1.8 glutamine synthetase compare
PS417_11755 -0.6 -2.1 diacetyl reductase compare
PS417_14835 -0.6 -2.7 amidase compare
PS417_00925 -0.6 -1.5 hypothetical protein compare
PS417_22445 -0.6 -1.5 ATP-dependent DNA helicase RuvB compare
PS417_23900 -0.6 -3.1 poly(A) polymerase compare
PS417_11380 -0.6 -2.1 peptidylprolyl isomerase compare
PS417_15095 -0.6 -0.8 hypothetical protein compare
PS417_17675 -0.6 -1.2 ABC transporter compare
PS417_12695 -0.6 -2.6 mannitol dehydrogenase compare
PS417_24615 -0.6 -0.9 hypothetical protein compare
PS417_03380 -0.6 -0.7 hypothetical protein compare
PS417_06455 -0.6 -2.1 Fe(II)-dependent oxygenase compare
PS417_18455 -0.6 -1.1 hypothetical protein compare
PS417_27085 -0.6 -1.5 AraC family transcriptional regulator compare
PS417_08130 -0.6 -1.2 aspartate aminotransferase compare
PS417_17160 -0.6 -1.3 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_28230 -0.6 -1.4 transcriptional regulator compare
PS417_08990 -0.6 -1.9 ABC transporter substrate-binding protein compare
PS417_17855 -0.6 -1.9 major facilitator transporter compare
PS417_05695 -0.6 -2.3 transcriptional regulator compare
PS417_19885 -0.6 -2.3 flagellar basal body rod protein FlgG compare
PS417_09010 -0.6 -1.3 phosphohistidine phosphatase compare
PS417_15035 -0.6 -1.0 alkylhydroperoxidase compare
PS417_18400 -0.6 -2.2 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_00590 -0.6 -1.5 5S ribosomal RNA compare
PS417_21585 -0.6 -3.9 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_04440 -0.6 -1.1 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_21565 -0.6 -3.0 flagellar basal body rod protein FlgC compare
PS417_18205 -0.6 -1.3 aldehyde dehydrogenase compare
PS417_01435 -0.6 -0.9 hypothetical protein compare
PS417_15495 -0.6 -2.6 FAD-dependent oxidoreductase compare
PS417_01605 -0.6 -0.7 phosphoglycerate mutase compare
PS417_14040 -0.6 -3.3 alkyl hydroperoxide reductase compare
PS417_27915 -0.6 -2.3 type VI secretion system protein ImpM compare
PS417_01855 -0.6 -1.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_14245 -0.6 -1.1 hypothetical protein compare
PS417_15200 -0.6 -1.4 protein activator of alkane oxidation PraB compare
PS417_03465 -0.6 -0.9 type III secretion protein compare
PS417_04500 -0.6 -0.9 hypothetical protein compare
PS417_10390 -0.6 -1.3 RNA polymerase subunit sigma24 compare
PS417_23765 -0.6 -2.2 hypothetical protein compare
PS417_09035 -0.6 -1.7 hypothetical protein compare
PS417_19655 -0.6 -1.8 chemotaxis protein CheW compare
PS417_14515 -0.6 -1.0 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_02225 -0.6 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_26805 -0.5 -0.7 cell division protein FtsE compare
PS417_19840 -0.5 -3.9 flagellar cap protein FliD compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress 80% Methanol across organisms