Experiment set32S558 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28050 -4.6 -4.2 hypothetical protein compare
PS417_23915 -4.2 -6.2 pantoate--beta-alanine ligase compare
PS417_22450 -3.8 -2.4 ATP-dependent DNA helicase RuvA compare
PS417_06680 -3.0 -5.7 nuclease PIN compare
PS417_01605 -3.0 -2.0 phosphoglycerate mutase compare
PS417_09600 -2.5 -7.5 glycosyl transferase family 1 compare
PS417_04380 -2.5 -1.6 ABC transporter permease compare
PS417_03560 -2.5 -2.2 GTP-binding protein compare
PS417_26990 -2.4 -1.2 RNA pyrophosphohydrolase compare
PS417_09590 -2.2 -9.5 membrane protein compare
PS417_27870 -2.1 -3.1 ATP-dependent DNA helicase RecG compare
PS417_23810 -2.1 -10.2 acetolactate synthase 3 catalytic subunit compare
PS417_08125 -2.1 -0.7 prephenate dehydratase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_02485 -2.0 -3.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27195 -2.0 -1.6 N-acetylglutamate synthase compare
PS417_22210 -1.9 -2.1 AraC family transcriptional regulator compare
PS417_09595 -1.8 -5.1 membrane protein compare
PS417_02270 -1.8 -2.9 carbamoyltransferase compare
PS417_04365 -1.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02555 -1.7 -8.8 exoribonuclease R compare
PS417_22840 -1.7 -2.3 tRNA-Met compare
PS417_09585 -1.6 -6.8 acetyltransferase compare
PS417_13510 -1.6 -1.5 polyketide cyclase compare
PS417_03260 -1.6 -1.5 5S ribosomal RNA compare
PS417_08130 -1.5 -2.7 aspartate aminotransferase compare
PS417_26775 -1.5 -8.2 thiazole synthase compare
PS417_27425 -1.5 -6.9 exopolyphosphatase compare
PS417_07565 -1.5 -1.9 hypothetical protein compare
PS417_23805 -1.4 -3.5 acetolactate synthase 3 regulatory subunit compare
PS417_08220 -1.4 -1.3 epimerase compare
PS417_24615 -1.4 -1.6 hypothetical protein compare
PS417_21480 -1.4 -1.6 23S rRNA pseudouridylate synthase compare
PS417_24115 -1.4 -2.4 hypothetical protein compare
PS417_19835 -1.4 -2.3 flagellar biosynthesis protein FliS compare
PS417_08170 -1.3 -6.7 capsular biosynthesis protein compare
PS417_01095 -1.3 -1.7 amino acid ABC transporter ATP-binding protein compare
PS417_10645 -1.3 -3.4 magnesium ABC transporter ATPase compare
PS417_21625 -1.3 -1.3 DNA-binding protein compare
PS417_19520 -1.3 -2.1 transcriptional regulator compare
PS417_25175 -1.3 -2.7 hypothetical protein compare
PS417_21430 -1.3 -1.4 3-oxoacyl-ACP synthase compare
PS417_04585 -1.2 -1.7 hypothetical protein compare
PS417_00385 -1.2 -1.4 Fur family transcriptional regulator compare
PS417_09470 -1.2 -1.4 hypothetical protein compare
PS417_05160 -1.2 -1.3 DNA polymerase III subunit chi compare
PS417_09625 -1.2 -2.1 sugar ABC transporter substrate-binding protein compare
PS417_06895 -1.2 -3.1 DNA-binding protein compare
PS417_19350 -1.2 -2.7 GTP cyclohydrolase compare
PS417_22445 -1.2 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_01620 -1.2 -2.0 preprotein translocase subunit SecB compare
PS417_09615 -1.1 -3.9 glycosyl transferase family 1 compare
PS417_11705 -1.1 -4.7 cyclic peptide transporter compare
PS417_26730 -1.1 -0.7 pyrroline-5-carboxylate reductase compare
PS417_16555 -1.1 -1.3 cupin compare
PS417_01580 -1.0 -1.3 imidazole glycerol phosphate synthase compare
PS417_19850 -0.9 -5.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_24605 -0.9 -2.7 thiamine-phosphate pyrophosphorylase compare
PS417_23390 -0.9 -4.5 ubiquinol oxidase subunit II compare
PS417_27715 -0.9 -2.6 Fe-S oxidoreductase compare
PS417_24600 -0.9 -3.5 hydrogenase compare
PS417_13490 -0.9 -2.0 hypothetical protein compare
PS417_23900 -0.9 -5.3 poly(A) polymerase compare
PS417_03300 -0.9 -1.8 alanine acetyltransferase compare
PS417_02560 -0.9 -1.1 23S rRNA methyltransferase compare
PS417_23380 -0.9 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_10600 -0.9 -1.4 hypothetical protein compare
PS417_23910 -0.9 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_28070 -0.9 -2.6 phosphate ABC transporter ATP-binding protein compare
PS417_23775 -0.8 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_27290 -0.8 -1.4 hypothetical protein compare
PS417_19675 -0.8 -2.7 chemotaxis protein CheY compare
PS417_06095 -0.8 -1.5 energy transducer TonB compare
PS417_05695 -0.8 -2.8 transcriptional regulator compare
PS417_07640 -0.8 -1.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21655 -0.8 -1.0 aspartate kinase compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_09620 -0.8 -4.8 lipopolysaccharide biosynthesis protein compare
PS417_19415 -0.8 -1.4 allantoinase compare
PS417_06370 -0.8 -1.1 cold-shock protein compare
PS417_06245 -0.8 -1.0 zinc metallopeptidase RseP compare
PS417_20030 -0.8 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_02255 -0.8 -1.1 lipopolysaccharide kinase compare
PS417_27005 -0.8 -0.9 membrane protein compare
PS417_27300 -0.7 -0.7 cell division protein ZapA compare
PS417_13255 -0.7 -1.9 ABC transporter compare
PS417_05560 -0.7 -1.6 ABC transporter compare
PS417_23665 -0.7 -2.3 Muconolactone isomerase (EC 5.3.3.4) (from data) compare
PS417_19800 -0.7 -2.5 flagellar motor switch protein FliG compare
PS417_23950 -0.7 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_22895 -0.7 -3.2 tyrosine recombinase XerD compare
PS417_02975 -0.7 -1.8 3-dehydroquinate dehydratase compare
PS417_07420 -0.7 -2.2 restriction endonuclease compare
PS417_14980 -0.7 -1.0 universal stress protein UspA compare
PS417_14835 -0.7 -1.4 amidase compare
PS417_13075 -0.7 -0.9 hypothetical protein compare
PS417_23370 -0.7 -2.5 protoheme IX farnesyltransferase compare
PS417_21180 -0.7 -2.0 short-chain dehydrogenase compare
PS417_03830 -0.7 -3.1 protein disaggregation chaperone compare
PS417_09605 -0.7 -1.5 glycosyl transferase compare
PS417_01290 -0.7 -1.2 ADP-ribose diphosphatase compare
PS417_16000 -0.7 -1.6 chemotaxis protein CheY compare
PS417_01560 -0.7 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_05975 -0.7 -0.5 chemotaxis protein CheW compare
PS417_15325 -0.7 -1.1 type VI secretion protein compare
PS417_19285 -0.7 -1.1 ankyrin compare
PS417_11485 -0.7 -1.4 AraC family transcriptional regulator compare
PS417_25720 -0.7 -3.8 anthranilate synthase component II compare
PS417_02990 -0.7 -2.2 hypothetical protein compare
PS417_16560 -0.7 -1.6 GNAT family acetyltransferase compare
PS417_12855 -0.7 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01145 -0.7 -0.7 taurine transporter ATP-binding subunit compare
PS417_19010 -0.7 -2.9 LysR family transcriptional regulator compare
PS417_13205 -0.6 -1.3 isochorismate-pyruvate lyase compare
PS417_04440 -0.6 -1.9 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_28225 -0.6 -1.0 hypothetical protein compare
PS417_02575 -0.6 -1.5 membrane protein compare
PS417_28080 -0.6 -4.0 phosphate ABC transporter permease compare
PS417_28230 -0.6 -2.0 transcriptional regulator compare
PS417_05535 -0.6 -1.3 Fis family transcriptional regulator compare
PS417_08135 -0.6 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21070 -0.6 -1.6 aconitate hydratase compare
PS417_16320 -0.6 -1.3 protein tyrosine phosphatase compare
PS417_15915 -0.6 -0.8 hypothetical protein compare
PS417_01565 -0.6 -2.9 imidazole glycerol phosphate synthase compare
PS417_08410 -0.6 -1.5 hypothetical protein compare
PS417_11950 -0.6 -1.1 hypothetical protein compare
PS417_14395 -0.6 -2.0 fe2+ zn2+ uptake regulation protein compare
PS417_27795 -0.6 -0.4 orotate phosphoribosyltransferase compare
PS417_11825 -0.6 -1.1 transcriptional regulator compare
PS417_06780 -0.6 -1.5 TetR family transcriptional regulator compare
PS417_09865 -0.6 -1.4 hypothetical protein compare
PS417_08090 -0.6 -0.6 3-oxoacyl-ACP reductase compare
PS417_08540 -0.6 -1.3 RNA helicase compare
PS417_04420 -0.6 -3.6 histidinol dehydrogenase compare
PS417_28170 -0.6 -2.8 transcriptional regulator compare
PS417_03780 -0.6 -1.9 general secretion pathway protein GspH compare
PS417_19860 -0.6 -4.8 flagellar hook protein FlgL compare
PS417_22800 -0.6 -2.5 heme iron utilization protein compare
PS417_21360 -0.6 -0.8 termination factor Rho compare
PS417_08105 -0.6 -4.5 N-ethylammeline chlorohydrolase compare
PS417_23385 -0.6 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_27585 -0.6 -1.1 diaminopimelate epimerase compare
PS417_17445 -0.6 -1.7 sulfur oxidation protein SoxZ compare
PS417_16510 -0.6 -2.6 Clp protease ClpX compare
PS417_02870 -0.6 -3.6 TonB-dependent receptor compare
PS417_25270 -0.6 -1.9 NrdR family transcriptional regulator compare
PS417_19735 -0.6 -3.3 flagellar biosynthesis protein FliQ compare
PS417_27595 -0.6 -1.2 recombinase XerC compare
PS417_18865 -0.6 -3.1 hypothetical protein compare
PS417_02740 -0.6 -1.4 LysR family transcriptional regulator compare
PS417_02800 -0.6 -1.3 acetyltransferase compare
PS417_15090 -0.6 -1.0 hypothetical protein compare
PS417_09915 -0.6 -1.2 hypothetical protein compare
PS417_19665 -0.6 -2.5 flagellar motor protein MotD compare
PS417_22315 -0.6 -1.9 DNA-3-methyladenine glycosylase compare
PS417_24745 -0.6 -0.9 gamma-glutamyl phosphate reductase compare
PS417_06335 -0.6 -1.3 S-formylglutathione hydrolase compare
PS417_00375 -0.6 -1.3 membrane protein compare
PS417_27915 -0.6 -1.9 type VI secretion system protein ImpM compare
PS417_18070 -0.6 -0.8 general secretion pathway protein GspH compare
PS417_17630 -0.6 -1.9 RNA polymerase sigma factor compare
PS417_02110 -0.6 -1.2 acyl carrier protein compare
PS417_04865 -0.6 -1.2 molybdenum cofactor biosynthesis protein MoaC compare
PS417_10120 -0.6 -1.6 hypothetical protein compare
PS417_22810 -0.6 -1.5 DNA base-flipping protein YbaZ compare
PS417_11430 -0.6 -2.8 EamA compare
PS417_19885 -0.5 -1.8 flagellar basal body rod protein FlgG compare
PS417_13730 -0.5 -1.1 hypothetical protein compare
PS417_18435 -0.5 -1.5 hypothetical protein compare
PS417_09200 -0.5 -2.6 ABC transporter compare
PS417_25380 -0.5 -1.7 hypothetical protein compare
PS417_05050 -0.5 -1.9 carboxymethylenebutenolidase compare
PS417_17740 -0.5 -2.6 fatty acid hydroxylase compare
PS417_26420 -0.5 -1.1 hypothetical protein compare
PS417_13175 -0.5 -1.1 iron transporter compare
PS417_06620 -0.5 -1.0 hypothetical protein compare
PS417_08685 -0.5 -1.0 flagellar hook-length control protein FliK compare
PS417_27865 -0.5 -1.0 LysR family transcriptional regulator compare
PS417_04375 -0.5 -0.6 ABC transporter ATP-binding protein compare
PS417_06745 -0.5 -1.3 polysaccharide deacetylase compare
PS417_19425 -0.5 -0.7 allantoicase compare
PS417_12505 -0.5 -2.2 peptidase compare
PS417_06500 -0.5 -1.1 hypothetical protein compare
PS417_14065 -0.5 -2.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18185 -0.5 -2.3 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_25155 -0.5 -0.9 hypothetical protein compare
PS417_02415 -0.5 -1.7 phosphoserine phosphatase compare
PS417_15400 -0.5 -0.9 hypothetical protein compare
PS417_10095 -0.5 -1.1 hypothetical protein compare
PS417_10490 -0.5 -2.0 delta-aminolevulinic acid dehydratase compare
PS417_18845 -0.5 -2.1 peptidase compare
PS417_00355 -0.5 -1.4 metal ABC transporter permease compare
PS417_14400 -0.5 -1.1 hypothetical protein compare
PS417_05200 -0.5 -1.5 DNA recombination protein RecO compare
PS417_12310 -0.5 -2.0 methionine synthase compare
PS417_25710 -0.5 -0.7 indole-3-glycerol-phosphate synthase compare
PS417_13425 -0.5 -1.1 cupin compare
PS417_19755 -0.5 -1.1 flagellar motor switch protein FliM compare
PS417_19840 -0.5 -3.8 flagellar cap protein FliD compare


Specific Phenotypes

For 1 genes in this experiment

For solid stress 80% Methanol in Pseudomonas simiae WCS417

For solid stress 80% Methanol across organisms