Experiment set32S557 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -6.4 -4.3 LysR family transcriptional regulator compare
PS417_00660 -5.7 -3.9 DSBA oxidoreductase compare
PS417_28070 -5.3 -8.5 phosphate ABC transporter ATP-binding protein compare
PS417_06770 -5.0 -8.4 multidrug transporter compare
PS417_00650 -4.9 -1.8 LysR family transcriptional regulator compare
PS417_00665 -4.7 -8.5 RND transporter compare
PS417_28050 -4.5 -3.7 hypothetical protein compare
PS417_23380 -4.4 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_06775 -3.7 -5.6 antibiotic transporter compare
PS417_05365 -3.6 -3.5 FAD-binding protein compare
PS417_28080 -3.5 -18.3 phosphate ABC transporter permease compare
PS417_17215 -3.5 -4.1 peptidylprolyl isomerase compare
PS417_14045 -3.4 -7.9 alkyl hydroperoxide reductase compare
PS417_28085 -3.4 -13.1 phosphate-binding protein compare
PS417_05590 -3.4 -9.5 iron ABC transporter ATP-binding protein compare
PS417_27835 -3.3 -8.6 endoribonuclease compare
PS417_00655 -3.3 -4.9 DSBA oxidoreductase compare
PS417_23385 -3.1 -9.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_07615 -3.1 -8.3 TetR family transcriptional regulator compare
PS417_01095 -3.0 -2.0 amino acid ABC transporter ATP-binding protein compare
PS417_10645 -3.0 -9.3 magnesium ABC transporter ATPase compare
PS417_07140 -2.9 -4.8 peptidase M48 compare
PS417_26985 -2.7 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27585 -2.7 -2.8 diaminopimelate epimerase compare
PS417_27605 -2.7 -7.1 hypothetical protein compare
PS417_04390 -2.7 -4.5 toluene tolerance protein compare
PS417_23950 -2.5 -1.9 polynucleotide phosphorylase/polyadenylase compare
PS417_23545 -2.4 -2.4 gamma-glutamyl kinase compare
PS417_18310 -2.3 -1.4 hypothetical protein compare
PS417_26990 -2.3 -1.1 RNA pyrophosphohydrolase compare
PS417_22735 -2.3 -9.3 thiol oxidoreductase compare
PS417_04380 -2.2 -1.3 ABC transporter permease compare
PS417_07170 -2.2 -5.4 hypothetical protein compare
PS417_22450 -2.2 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_23390 -2.1 -6.8 ubiquinol oxidase subunit II compare
PS417_26730 -2.1 -1.0 pyrroline-5-carboxylate reductase compare
PS417_10720 -2.1 -5.8 chemotaxis protein CheY compare
PS417_16370 -2.1 -9.1 chemotaxis protein CheY compare
PS417_00045 -2.1 -2.2 glycerol acyltransferase compare
PS417_20855 -2.0 -1.2 hypothetical protein compare
PS417_00345 -2.0 -1.9 copper-binding protein compare
PS417_23375 -2.0 -1.7 cytochrome C oxidase compare
PS417_02555 -2.0 -9.9 exoribonuclease R compare
PS417_16555 -1.9 -2.1 cupin compare
PS417_27870 -1.9 -3.1 ATP-dependent DNA helicase RecG compare
PS417_02255 -1.9 -4.3 lipopolysaccharide kinase compare
PS417_12740 -1.9 -4.5 secretion protein HlyD compare
PS417_06680 -1.9 -5.3 nuclease PIN compare
PS417_06375 -1.9 -0.6 deoxycytidine triphosphate deaminase compare
PS417_08125 -1.8 -0.6 prephenate dehydratase compare
PS417_22195 -1.8 -5.6 peptidase compare
PS417_28075 -1.8 -3.7 phosphate ABC transporter permease compare
PS417_05535 -1.7 -1.6 Fis family transcriptional regulator compare
PS417_12750 -1.7 -5.8 acriflavine resistance protein B compare
PS417_27610 -1.7 -3.9 hypothetical protein compare
PS417_01955 -1.7 -9.1 peptidase compare
PS417_06365 -1.7 -6.1 RNA polymerase sigma factor compare
PS417_03990 -1.6 -10.6 ligand-gated channel protein compare
PS417_22935 -1.6 -2.5 hypothetical protein compare
PS417_03260 -1.5 -1.3 5S ribosomal RNA compare
PS417_01185 -1.5 -5.4 ribosomal protein S6 modification protein compare
PS417_18355 -1.5 -9.9 DNA-binding protein compare
PS417_02270 -1.5 -4.0 carbamoyltransferase compare
PS417_12745 -1.4 -5.8 multidrug transporter compare
PS417_07165 -1.4 -4.0 dihydrodipicolinate synthase compare
PS417_15875 -1.4 -2.2 LuxR family transcriptional regulator compare
PS417_14065 -1.4 -5.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_05595 -1.4 -6.3 ornithine carbamoyltransferase compare
PS417_01605 -1.4 -1.2 phosphoglycerate mutase compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_02880 -1.4 -1.7 copper chaperone compare
PS417_15110 -1.4 -4.3 protein BatD compare
PS417_12755 -1.4 -2.7 RND transporter compare
PS417_21780 -1.3 -4.1 argininosuccinate lyase compare
PS417_16360 -1.3 -3.9 histidine kinase compare
PS417_25815 -1.3 -2.4 magnesium transporter ApaG compare
PS417_22570 -1.3 -0.9 H-NS histone compare
PS417_09590 -1.3 -3.7 membrane protein compare
PS417_05210 -1.3 -4.9 copper oxidase compare
PS417_19350 -1.3 -4.2 GTP cyclohydrolase compare
PS417_06205 -1.3 -5.9 methionine aminopeptidase compare
PS417_22170 -1.3 -2.4 acetyltransferase compare
PS417_04385 -1.3 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_15075 -1.3 -6.1 NAD-glutamate dehydrogenase compare
PS417_27315 -1.3 -1.6 hypothetical protein compare
PS417_23915 -1.3 -2.8 pantoate--beta-alanine ligase compare
PS417_07710 -1.2 -2.5 membrane protein compare
PS417_22400 -1.2 -6.6 7-cyano-7-deazaguanine synthase compare
PS417_23370 -1.2 -3.1 protoheme IX farnesyltransferase compare
PS417_07695 -1.2 -4.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_24780 -1.2 -8.0 peptidase C13 compare
PS417_01795 -1.2 -8.6 glucosyltransferase MdoH compare
PS417_02485 -1.2 -2.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04590 -1.2 -3.1 methyltransferase compare
PS417_01920 -1.2 -1.0 ATP-dependent protease subunit HslV compare
PS417_01565 -1.2 -3.6 imidazole glycerol phosphate synthase compare
PS417_22745 -1.2 -4.4 hypothetical protein compare
PS417_04000 -1.2 -6.5 hypothetical protein compare
PS417_03830 -1.1 -5.9 protein disaggregation chaperone compare
PS417_21425 -1.1 -2.1 4-amino-4-deoxychorismate lyase compare
PS417_18545 -1.1 -2.6 cell division protein compare
PS417_02385 -1.1 -1.6 esterase compare
PS417_04585 -1.1 -1.6 hypothetical protein compare
PS417_09595 -1.1 -4.5 membrane protein compare
PS417_22740 -1.1 -4.3 imelysin compare
PS417_04420 -1.1 -6.1 histidinol dehydrogenase compare
PS417_27490 -1.1 -2.0 hypothetical protein compare
PS417_22810 -1.1 -1.9 DNA base-flipping protein YbaZ compare
PS417_27300 -1.1 -0.8 cell division protein ZapA compare
PS417_06145 -1.1 -1.2 hypothetical protein compare
PS417_27295 -1.1 -3.2 hypothetical protein compare
PS417_15090 -1.1 -1.4 hypothetical protein compare
PS417_22065 -1.0 -4.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_02475 -1.0 -2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_10275 -1.0 -1.5 histidine kinase compare
PS417_09615 -1.0 -2.8 glycosyl transferase family 1 compare
PS417_25720 -1.0 -3.7 anthranilate synthase component II compare
PS417_16490 -1.0 -1.0 cell division protein FtsK compare
PS417_23880 -1.0 -5.0 glutamyl-Q tRNA(Asp) ligase compare
PS417_15105 -1.0 -3.8 membrane protein compare
PS417_12695 -1.0 -3.3 mannitol dehydrogenase compare
PS417_01600 -1.0 -3.9 peptidase M23 compare
PS417_24710 -1.0 -6.0 lipoprotein compare
PS417_19415 -1.0 -2.2 allantoinase compare
PS417_08155 -1.0 -0.9 integration host factor subunit beta compare
PS417_21210 -1.0 -1.8 amidotransferase compare
PS417_24115 -1.0 -1.8 hypothetical protein compare
PS417_03935 -1.0 -2.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_04475 -1.0 -2.6 hypothetical protein compare
PS417_03300 -1.0 -2.2 alanine acetyltransferase compare
PS417_25320 -1.0 -5.8 dTDP-4-dehydrorhamnose reductase compare
PS417_24585 -1.0 -5.7 AMP nucleosidase compare
PS417_21105 -1.0 -6.4 aminodeoxychorismate synthase compare
PS417_01790 -0.9 -4.4 glucan biosynthesis protein G compare
PS417_09620 -0.9 -5.7 lipopolysaccharide biosynthesis protein compare
PS417_03985 -0.9 -5.8 flavodoxin compare
PS417_24705 -0.9 -2.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_22825 -0.9 -5.2 hypothetical protein compare
PS417_09630 -0.9 -4.3 glycosyl transferase compare
PS417_26775 -0.9 -4.5 thiazole synthase compare
PS417_28265 -0.9 -1.8 pyridoxamine kinase compare
PS417_15200 -0.9 -2.7 protein activator of alkane oxidation PraB compare
PS417_03995 -0.9 -3.3 Fe(II)-dependent oxygenase compare
PS417_22405 -0.9 -5.5 7-carboxy-7-deazaguanine synthase compare
PS417_27555 -0.9 -2.2 DNA-binding protein compare
PS417_12870 -0.9 -1.3 enoyl-CoA hydratase compare
PS417_23820 -0.9 -2.7 hypothetical protein compare
PS417_24615 -0.9 -1.3 hypothetical protein compare
PS417_04270 -0.9 -4.9 ribonuclease G compare
PS417_09600 -0.9 -3.4 glycosyl transferase family 1 compare
PS417_21480 -0.9 -0.8 23S rRNA pseudouridylate synthase compare
PS417_23995 -0.9 -0.7 preprotein translocase subunit SecG compare
PS417_26420 -0.9 -1.4 hypothetical protein compare
PS417_09830 -0.9 -3.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_01710 -0.9 -3.5 histidine utilization repressor compare
PS417_13525 -0.9 -1.6 membrane protein compare
PS417_15135 -0.8 -1.2 hypothetical protein compare
PS417_13205 -0.8 -1.7 isochorismate-pyruvate lyase compare
PS417_08685 -0.8 -1.1 flagellar hook-length control protein FliK compare
PS417_12595 -0.8 -1.7 transcriptional regulator compare
PS417_09085 -0.8 -1.3 hypothetical protein compare
PS417_13620 -0.8 -1.0 thermostable hemolysin compare
PS417_19675 -0.8 -3.0 chemotaxis protein CheY compare
PS417_04595 -0.8 -1.4 cell division protein MraZ compare
PS417_03525 -0.8 -1.0 hypothetical protein compare
PS417_05965 -0.8 -2.7 chemotaxis protein CheW compare
PS417_14315 -0.8 -1.7 2,5-dioxovalerate dehydrogenase compare
PS417_03965 -0.8 -3.6 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_24800 -0.8 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_09210 -0.8 -1.2 TetR family transcriptional regulator compare
PS417_04340 -0.8 -2.6 ribosome hibernation promoting factor HPF compare
PS417_07510 -0.8 -3.8 aspartyl beta-hydroxylase compare
PS417_23575 -0.8 -1.7 hypothetical protein compare
PS417_15540 -0.8 -1.4 NUDIX hydrolase compare
PS417_05885 -0.8 -2.5 potassium transporter Kup compare
PS417_27535 -0.8 -5.2 chemotaxis protein CheY compare
PS417_09625 -0.8 -1.3 sugar ABC transporter substrate-binding protein compare
PS417_26755 -0.8 -1.1 nucleoside-triphosphate diphosphatase compare
PS417_12310 -0.8 -3.0 methionine synthase compare
PS417_04115 -0.8 -3.8 alpha/beta hydrolase compare
PS417_09585 -0.7 -4.7 acetyltransferase compare
PS417_23095 -0.7 -0.9 exodeoxyribonuclease compare
PS417_06895 -0.7 -2.6 DNA-binding protein compare
PS417_01030 -0.7 -1.2 glutamine ABC transporter substrate-binding protein compare
PS417_00945 -0.7 -1.6 sulfate ABC transporter ATP-binding protein compare
PS417_27815 -0.7 -0.8 hypothetical protein compare
PS417_02225 -0.7 -1.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21360 -0.7 -0.8 termination factor Rho compare
PS417_00385 -0.7 -0.9 Fur family transcriptional regulator compare
PS417_20130 -0.7 -5.3 dehydrogenase compare
PS417_08130 -0.7 -1.1 aspartate aminotransferase compare
PS417_10675 -0.7 -0.9 TetR family transcriptional regulator compare
PS417_01975 -0.7 -3.8 pilus assembly protein PilQ compare
PS417_19285 -0.7 -0.7 ankyrin compare
PS417_14655 -0.7 -0.9 lysine transporter LysE compare
PS417_22260 -0.7 -2.3 segregation and condensation protein B compare
PS417_12840 -0.7 -2.3 TetR family transcriptional regulator compare
PS417_06100 -0.7 -1.3 SAM-dependent methyltransferase compare
PS417_14040 -0.7 -3.2 alkyl hydroperoxide reductase compare
PS417_00370 -0.7 -0.7 hypothetical protein compare


Specific Phenotypes

For 15 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms