Experiment set32S556 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27865 -5.9 -4.1 LysR family transcriptional regulator compare
PS417_00650 -4.6 -1.9 LysR family transcriptional regulator compare
PS417_23950 -4.1 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_00660 -3.2 -4.3 DSBA oxidoreductase compare
PS417_05365 -3.1 -3.0 FAD-binding protein compare
PS417_22450 -3.0 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_00655 -2.4 -6.0 DSBA oxidoreductase compare
PS417_00920 -2.4 -7.0 diguanylate cyclase compare
PS417_23915 -2.4 -4.3 pantoate--beta-alanine ligase compare
PS417_28050 -2.4 -2.0 hypothetical protein compare
PS417_27300 -2.4 -1.3 cell division protein ZapA compare
PS417_27870 -2.2 -2.6 ATP-dependent DNA helicase RecG compare
PS417_01605 -2.2 -1.5 phosphoglycerate mutase compare
PS417_24705 -2.1 -3.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_00665 -2.1 -9.1 RND transporter compare
PS417_06770 -2.0 -6.5 multidrug transporter compare
PS417_26990 -2.0 -1.1 RNA pyrophosphohydrolase compare
PS417_20855 -1.9 -1.7 hypothetical protein compare
PS417_16490 -1.9 -1.5 cell division protein FtsK compare
PS417_18310 -1.9 -1.2 hypothetical protein compare
PS417_26775 -1.8 -7.3 thiazole synthase compare
PS417_05975 -1.8 -1.0 chemotaxis protein CheW compare
PS417_27835 -1.8 -4.5 endoribonuclease compare
PS417_26985 -1.8 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26730 -1.8 -1.0 pyrroline-5-carboxylate reductase compare
PS417_03560 -1.8 -1.7 GTP-binding protein compare
PS417_06775 -1.7 -6.5 antibiotic transporter compare
PS417_24600 -1.7 -7.3 hydrogenase compare
PS417_10645 -1.6 -4.6 magnesium ABC transporter ATPase compare
PS417_04380 -1.6 -1.1 ABC transporter permease compare
PS417_06680 -1.6 -4.1 nuclease PIN compare
PS417_08125 -1.5 -0.6 prephenate dehydratase compare
PS417_06375 -1.5 -0.6 deoxycytidine triphosphate deaminase compare
PS417_04390 -1.5 -1.8 toluene tolerance protein compare
PS417_27195 -1.5 -1.5 N-acetylglutamate synthase compare
PS417_00175 -1.5 -1.6 CigR compare
PS417_24745 -1.4 -2.4 gamma-glutamyl phosphate reductase compare
PS417_03995 -1.4 -4.1 Fe(II)-dependent oxygenase compare
PS417_23375 -1.4 -2.1 cytochrome C oxidase compare
PS417_07615 -1.4 -3.8 TetR family transcriptional regulator compare
PS417_23380 -1.4 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_19350 -1.4 -3.7 GTP cyclohydrolase compare
PS417_28070 -1.4 -7.8 phosphate ABC transporter ATP-binding protein compare
PS417_06245 -1.3 -1.2 zinc metallopeptidase RseP compare
PS417_06835 -1.3 -2.6 phospholipase compare
PS417_27910 -1.3 -2.9 PppA compare
PS417_02555 -1.3 -6.6 exoribonuclease R compare
PS417_02255 -1.3 -3.1 lipopolysaccharide kinase compare
PS417_24605 -1.3 -2.9 thiamine-phosphate pyrophosphorylase compare
PS417_27605 -1.3 -5.8 hypothetical protein compare
PS417_02270 -1.3 -3.1 carbamoyltransferase compare
PS417_01560 -1.3 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_07470 -1.3 -1.8 hypothetical protein compare
PS417_21655 -1.3 -1.4 aspartate kinase compare
PS417_08155 -1.2 -1.2 integration host factor subunit beta compare
PS417_28080 -1.2 -9.3 phosphate ABC transporter permease compare
PS417_01575 -1.2 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18545 -1.2 -2.7 cell division protein compare
PS417_28075 -1.2 -4.9 phosphate ABC transporter permease compare
PS417_02975 -1.2 -3.4 3-dehydroquinate dehydratase compare
PS417_01955 -1.2 -6.5 peptidase compare
PS417_05595 -1.2 -6.5 ornithine carbamoyltransferase compare
PS417_09590 -1.1 -4.0 membrane protein compare
PS417_24710 -1.1 -6.7 lipoprotein compare
PS417_23820 -1.1 -3.2 hypothetical protein compare
PS417_27795 -1.1 -0.6 orotate phosphoribosyltransferase compare
PS417_04585 -1.1 -1.1 hypothetical protein compare
PS417_22735 -1.1 -6.4 thiol oxidoreductase compare
PS417_08410 -1.1 -1.4 hypothetical protein compare
PS417_05815 -1.1 -2.8 recombinase RecA compare
PS417_05445 -1.0 -1.4 DNA mismatch repair protein MutT compare
PS417_28085 -1.0 -7.6 phosphate-binding protein compare
PS417_18235 -1.0 -1.4 nitrile hydratase compare
PS417_23545 -1.0 -1.7 gamma-glutamyl kinase compare
PS417_27940 -1.0 -1.6 type VI secretion protein compare
PS417_22705 -1.0 -2.5 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_01565 -0.9 -4.1 imidazole glycerol phosphate synthase compare
PS417_02510 -0.9 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23390 -0.9 -4.6 ubiquinol oxidase subunit II compare
PS417_01095 -0.9 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_12565 -0.9 -1.7 2-dehydro-3-deoxygluconokinase compare
PS417_01185 -0.9 -4.7 ribosomal protein S6 modification protein compare
PS417_14045 -0.9 -1.8 alkyl hydroperoxide reductase compare
PS417_05590 -0.9 -3.7 iron ABC transporter ATP-binding protein compare
PS417_01580 -0.9 -0.8 imidazole glycerol phosphate synthase compare
PS417_06365 -0.9 -4.9 RNA polymerase sigma factor compare
PS417_08580 -0.9 -3.8 histidine kinase compare
PS417_20880 -0.9 -1.6 GntR family transcriptional regulator compare
PS417_02485 -0.9 -1.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08170 -0.9 -5.5 capsular biosynthesis protein compare
PS417_04420 -0.9 -3.5 histidinol dehydrogenase compare
PS417_03525 -0.9 -1.5 hypothetical protein compare
PS417_19645 -0.9 -2.2 chemotaxis protein compare
PS417_08685 -0.9 -1.3 flagellar hook-length control protein FliK compare
PS417_20950 -0.9 -2.7 hypothetical protein compare
PS417_22530 -0.9 -2.5 hypothetical protein compare
PS417_13855 -0.9 -1.2 acetyl-CoA acetyltransferase compare
PS417_19995 -0.9 -4.0 Long-chain fatty acid transport protein compare
PS417_09915 -0.9 -1.5 hypothetical protein compare
PS417_25390 -0.9 -2.0 MFS transporter compare
PS417_24570 -0.9 -2.8 AsnC family transcriptional regulator compare
PS417_23385 -0.9 -3.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_16370 -0.9 -4.8 chemotaxis protein CheY compare
PS417_15100 -0.9 -1.4 BatB protein compare
PS417_04385 -0.9 -1.1 organic solvent ABC transporter substrate-binding protein compare
PS417_03455 -0.8 -1.2 type III secretion protein compare
PS417_07695 -0.8 -3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_27245 -0.8 -1.4 aminotransferase DegT compare
PS417_13525 -0.8 -2.7 membrane protein compare
PS417_08130 -0.8 -1.5 aspartate aminotransferase compare
PS417_01850 -0.8 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_16715 -0.8 -1.0 DoxX family protein compare
PS417_09615 -0.8 -3.3 glycosyl transferase family 1 compare
PS417_26060 -0.8 -2.2 DNA polymerase III subunit epsilon compare
PS417_19650 -0.8 -2.9 chemotaxis protein CheW compare
PS417_27610 -0.8 -4.3 hypothetical protein compare
PS417_02070 -0.8 -0.9 membrane protein compare
PS417_02385 -0.8 -1.0 esterase compare
PS417_05065 -0.8 -1.2 hypothetical protein compare
PS417_23910 -0.8 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_23025 -0.8 -2.4 murein transglycosylase compare
PS417_03990 -0.8 -5.5 ligand-gated channel protein compare
PS417_03300 -0.8 -1.9 alanine acetyltransferase compare
PS417_22690 -0.8 -1.4 phosphogluconate dehydratase compare
PS417_18355 -0.8 -5.2 DNA-binding protein compare
PS417_26850 -0.8 -0.7 twin-arginine translocation pathway signal protein compare
PS417_21480 -0.8 -0.9 23S rRNA pseudouridylate synthase compare
PS417_24780 -0.8 -5.4 peptidase C13 compare
PS417_17215 -0.7 -1.6 peptidylprolyl isomerase compare
PS417_16555 -0.7 -0.9 cupin compare
PS417_03260 -0.7 -0.8 5S ribosomal RNA compare
PS417_16510 -0.7 -2.0 Clp protease ClpX compare
PS417_12695 -0.7 -3.0 mannitol dehydrogenase compare
PS417_06335 -0.7 -2.1 S-formylglutathione hydrolase compare
PS417_15865 -0.7 -2.8 hypothetical protein compare
PS417_22050 -0.7 -2.2 ribonuclease BN compare
PS417_15975 -0.7 -1.8 glutamate carboxypeptidase compare
PS417_27305 -0.7 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_04595 -0.7 -1.3 cell division protein MraZ compare
PS417_00380 -0.7 -3.1 zinc ABC transporter ATP-binding protein compare
PS417_23360 -0.7 -0.8 hypothetical protein compare
PS417_09600 -0.7 -2.5 glycosyl transferase family 1 compare
PS417_26995 -0.7 -3.8 phosphoserine phosphatase compare
PS417_15095 -0.7 -1.3 hypothetical protein compare
PS417_26520 -0.7 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_26175 -0.7 -0.6 sarcosine oxidase subunit gamma compare
PS417_06500 -0.7 -1.0 hypothetical protein compare
PS417_27785 -0.7 -3.7 phosphoglucomutase compare
PS417_15540 -0.7 -1.0 NUDIX hydrolase compare
PS417_08230 -0.7 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_20365 -0.7 -2.0 Cro/Cl family transcriptional regulator compare
PS417_06145 -0.7 -0.8 hypothetical protein compare
PS417_27295 -0.7 -2.3 hypothetical protein compare
PS417_13425 -0.7 -0.9 cupin compare
PS417_04365 -0.7 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_24115 -0.7 -1.4 hypothetical protein compare
PS417_26800 -0.7 -3.7 cell division protein FtsX compare
PS417_05695 -0.7 -2.3 transcriptional regulator compare
PS417_24135 -0.7 -1.2 hypothetical protein compare
PS417_22935 -0.6 -1.5 hypothetical protein compare
PS417_18055 -0.6 -0.9 general secretion pathway protein GspK compare
PS417_14975 -0.6 -2.1 tRNA hydroxylase compare
PS417_06465 -0.6 -1.5 transcriptional regulator compare
PS417_22195 -0.6 -2.9 peptidase compare
PS417_25780 -0.6 -1.8 molecular chaperone DnaJ compare
PS417_01600 -0.6 -2.5 peptidase M23 compare
PS417_26005 -0.6 -3.7 biotin synthase compare
PS417_28510 -0.6 -2.5 chromosome partitioning protein compare
PS417_15085 -0.6 -1.9 ATPase AAA compare
PS417_25155 -0.6 -1.0 hypothetical protein compare
PS417_27425 -0.6 -3.3 exopolyphosphatase compare
PS417_01855 -0.6 -1.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_11545 -0.6 -2.8 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_12490 -0.6 -0.9 autotransporter adhesin compare
PS417_21625 -0.6 -0.7 DNA-binding protein compare
PS417_15935 -0.6 -1.4 Rrf2 family transcriptional regulator compare
PS417_21425 -0.6 -0.9 4-amino-4-deoxychorismate lyase compare
PS417_11925 -0.6 -1.2 hypothetical protein compare
PS417_11715 -0.6 -1.5 chromophore maturation protein PvdO compare
PS417_07305 -0.6 -0.8 3-beta hydroxysteroid dehydrogenase compare
PS417_05500 -0.6 -1.7 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_01550 -0.6 -2.2 cell envelope biogenesis protein AsmA compare
PS417_21105 -0.6 -3.2 aminodeoxychorismate synthase compare
PS417_19415 -0.6 -1.5 allantoinase compare
PS417_04270 -0.6 -4.2 ribonuclease G compare
PS417_20775 -0.6 -1.9 coproporphyrinogen III oxidase compare
PS417_06530 -0.6 -1.1 membrane protein compare
PS417_23095 -0.6 -0.8 exodeoxyribonuclease compare
PS417_02880 -0.6 -0.9 copper chaperone compare
PS417_07710 -0.6 -1.2 membrane protein compare
PS417_15090 -0.6 -1.1 hypothetical protein compare
PS417_22570 -0.6 -0.5 H-NS histone compare
PS417_27705 -0.6 -1.0 amino acid dehydrogenase compare
PS417_27105 -0.6 -2.4 spermidine/putrescine ABC transporter permease compare
PS417_00925 -0.6 -1.0 hypothetical protein compare
PS417_05025 -0.6 -1.2 maleylacetoacetate isomerase compare
PS417_24675 -0.6 -1.0 lipoyl synthase compare
PS417_16160 -0.6 -1.3 ABC transporter substrate-binding protein compare
PS417_14295 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_05615 -0.6 -2.3 (2Fe-2S)-binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms