Experiment set32S555 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.4 -6.1 pantoate--beta-alanine ligase compare
PS417_27795 -3.4 -1.4 orotate phosphoribosyltransferase compare
PS417_27865 -3.4 -5.3 LysR family transcriptional regulator compare
PS417_21480 -3.3 -2.0 23S rRNA pseudouridylate synthase compare
PS417_01605 -3.1 -2.1 phosphoglycerate mutase compare
PS417_01915 -2.9 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_28050 -2.7 -2.4 hypothetical protein compare
PS417_04380 -2.5 -1.7 ABC transporter permease compare
PS417_22450 -2.4 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_27135 -2.4 -1.3 glutamine synthetase compare
PS417_01580 -2.1 -2.6 imidazole glycerol phosphate synthase compare
PS417_06680 -2.1 -6.0 nuclease PIN compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_02255 -1.6 -3.3 lipopolysaccharide kinase compare
PS417_21430 -1.6 -1.6 3-oxoacyl-ACP synthase compare
PS417_00660 -1.5 -3.2 DSBA oxidoreductase compare
PS417_26990 -1.5 -1.1 RNA pyrophosphohydrolase compare
PS417_26775 -1.5 -8.0 thiazole synthase compare
PS417_24600 -1.4 -7.1 hydrogenase compare
PS417_23950 -1.4 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_02485 -1.3 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01855 -1.3 -2.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_02385 -1.3 -1.6 esterase compare
PS417_02555 -1.3 -7.7 exoribonuclease R compare
PS417_28070 -1.2 -7.4 phosphate ABC transporter ATP-binding protein compare
PS417_03260 -1.2 -1.3 5S ribosomal RNA compare
PS417_24605 -1.2 -2.6 thiamine-phosphate pyrophosphorylase compare
PS417_24710 -1.2 -6.4 lipoprotein compare
PS417_00655 -1.2 -6.5 DSBA oxidoreductase compare
PS417_10645 -1.2 -3.4 magnesium ABC transporter ATPase compare
PS417_06530 -1.2 -2.4 membrane protein compare
PS417_21655 -1.2 -1.5 aspartate kinase compare
PS417_23805 -1.2 -3.3 acetolactate synthase 3 regulatory subunit compare
PS417_26730 -1.1 -0.8 pyrroline-5-carboxylate reductase compare
PS417_04365 -1.1 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02270 -1.1 -3.4 carbamoyltransferase compare
PS417_24675 -1.1 -2.0 lipoyl synthase compare
PS417_09590 -1.1 -4.6 membrane protein compare
PS417_24745 -1.1 -1.2 gamma-glutamyl phosphate reductase compare
PS417_19350 -1.1 -3.1 GTP cyclohydrolase compare
PS417_27195 -1.1 -1.5 N-acetylglutamate synthase compare
PS417_06770 -1.1 -5.0 multidrug transporter compare
PS417_05695 -1.0 -3.8 transcriptional regulator compare
PS417_05975 -1.0 -0.8 chemotaxis protein CheW compare
PS417_15875 -1.0 -1.6 LuxR family transcriptional regulator compare
PS417_04390 -1.0 -2.6 toluene tolerance protein compare
PS417_22935 -1.0 -2.2 hypothetical protein compare
PS417_24615 -1.0 -1.6 hypothetical protein compare
PS417_00045 -1.0 -1.7 glycerol acyltransferase compare
PS417_00650 -1.0 -1.0 LysR family transcriptional regulator compare
PS417_03815 -0.9 -2.2 DNA transporter compare
PS417_07470 -0.9 -1.0 hypothetical protein compare
PS417_23375 -0.9 -1.5 cytochrome C oxidase compare
PS417_03455 -0.9 -1.3 type III secretion protein compare
PS417_02975 -0.9 -2.6 3-dehydroquinate dehydratase compare
PS417_27870 -0.9 -1.6 ATP-dependent DNA helicase RecG compare
PS417_28080 -0.9 -6.7 phosphate ABC transporter permease compare
PS417_02280 -0.9 -1.3 GlcNAc-PI de-N-acetylase compare
PS417_17945 -0.9 -0.9 hypothetical protein compare
PS417_10480 -0.9 -1.1 glutathione S-transferase compare
PS417_10405 -0.8 -1.2 filamentous hemagglutinin compare
PS417_01565 -0.8 -3.3 imidazole glycerol phosphate synthase compare
PS417_15975 -0.8 -2.1 glutamate carboxypeptidase compare
PS417_22445 -0.8 -1.4 ATP-dependent DNA helicase RuvB compare
PS417_14045 -0.8 -2.7 alkyl hydroperoxide reductase compare
PS417_05815 -0.8 -2.4 recombinase RecA compare
PS417_22570 -0.8 -0.8 H-NS histone compare
PS417_13755 -0.8 -0.8 oxidoreductase compare
PS417_06775 -0.8 -3.5 antibiotic transporter compare
PS417_27715 -0.8 -3.0 Fe-S oxidoreductase compare
PS417_20855 -0.8 -1.2 hypothetical protein compare
PS417_03560 -0.8 -1.1 GTP-binding protein compare
PS417_04385 -0.8 -1.4 organic solvent ABC transporter substrate-binding protein compare
PS417_27605 -0.7 -4.2 hypothetical protein compare
PS417_09600 -0.7 -3.4 glycosyl transferase family 1 compare
PS417_04650 -0.7 -0.4 D-alanine--D-alanine ligase compare
PS417_00065 -0.7 -1.2 3-methyladenine DNA glycosylase compare
PS417_00665 -0.7 -4.3 RND transporter compare
PS417_21425 -0.7 -1.7 4-amino-4-deoxychorismate lyase compare
PS417_07940 -0.7 -2.2 hypothetical protein compare
PS417_10330 -0.7 -2.0 histidine kinase compare
PS417_11925 -0.7 -1.6 hypothetical protein compare
PS417_23385 -0.7 -3.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_23390 -0.7 -3.6 ubiquinol oxidase subunit II compare
PS417_04170 -0.7 -3.0 stringent starvation protein A compare
PS417_10600 -0.7 -1.9 hypothetical protein compare
PS417_01955 -0.7 -5.0 peptidase compare
PS417_01620 -0.7 -2.3 preprotein translocase subunit SecB compare
PS417_06490 -0.7 -3.1 hypothetical protein compare
PS417_06895 -0.7 -2.0 DNA-binding protein compare
PS417_04270 -0.7 -4.1 ribonuclease G compare
PS417_27425 -0.7 -3.5 exopolyphosphatase compare
PS417_28225 -0.7 -1.2 hypothetical protein compare
PS417_28075 -0.7 -3.3 phosphate ABC transporter permease compare
PS417_23810 -0.7 -3.6 acetolactate synthase 3 catalytic subunit compare
PS417_18205 -0.7 -1.6 aldehyde dehydrogenase compare
PS417_27705 -0.7 -1.3 amino acid dehydrogenase compare
PS417_08510 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_08130 -0.6 -1.1 aspartate aminotransferase compare
PS417_19190 -0.6 -2.2 BolA family transcriptional regulator compare
PS417_27835 -0.6 -2.9 endoribonuclease compare
PS417_23820 -0.6 -2.6 hypothetical protein compare
PS417_16555 -0.6 -1.1 cupin compare
PS417_02745 -0.6 -1.7 FMN-dependent NADH-azoreductase compare
PS417_22050 -0.6 -2.4 ribonuclease BN compare
PS417_12655 -0.6 -2.3 methionine aminopeptidase compare
PS417_01560 -0.6 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_15095 -0.6 -2.0 hypothetical protein compare
PS417_08410 -0.6 -1.1 hypothetical protein compare
PS417_21105 -0.6 -3.8 aminodeoxychorismate synthase compare
PS417_25320 -0.6 -3.4 dTDP-4-dehydrorhamnose reductase compare
PS417_09580 -0.6 -1.5 tyrosyl-trna synthetase compare
PS417_15100 -0.6 -1.3 BatB protein compare
PS417_19160 -0.6 -3.0 hypothetical protein compare
PS417_23170 -0.6 -1.4 FeS assembly protein IscX compare
PS417_08540 -0.6 -1.4 RNA helicase compare
PS417_07695 -0.6 -2.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_01030 -0.6 -1.3 glutamine ABC transporter substrate-binding protein compare
PS417_20825 -0.6 -1.2 drug:proton antiporter compare
PS417_09865 -0.6 -1.5 hypothetical protein compare
PS417_11390 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_24895 -0.6 -1.1 hypothetical protein compare
PS417_08090 -0.6 -0.6 3-oxoacyl-ACP reductase compare
PS417_16495 -0.6 -2.2 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_06095 -0.6 -1.0 energy transducer TonB compare
PS417_09740 -0.6 -2.5 RNA polymerase subunit sigma-24 compare
PS417_11485 -0.6 -1.4 AraC family transcriptional regulator compare
PS417_08685 -0.6 -1.1 flagellar hook-length control protein FliK compare
PS417_23900 -0.6 -3.4 poly(A) polymerase compare
PS417_22530 -0.6 -2.6 hypothetical protein compare
PS417_16710 -0.6 -2.6 hydrolase compare
PS417_15085 -0.6 -2.0 ATPase AAA compare
PS417_05595 -0.6 -4.1 ornithine carbamoyltransferase compare
PS417_23380 -0.6 -1.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_09830 -0.6 -2.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_12310 -0.6 -2.3 methionine synthase compare
PS417_21090 -0.6 -1.5 hypothetical protein compare
PS417_05985 -0.6 -1.6 chemotaxis protein CheY compare
PS417_07305 -0.6 -1.9 3-beta hydroxysteroid dehydrogenase compare
PS417_18865 -0.6 -2.8 hypothetical protein compare
PS417_26605 -0.6 -0.9 malonate decarboxylase subunit beta compare
PS417_26120 -0.6 -0.6 hypothetical protein compare
PS417_09210 -0.6 -1.0 TetR family transcriptional regulator compare
PS417_16510 -0.5 -2.2 Clp protease ClpX compare
PS417_27595 -0.5 -1.4 recombinase XerC compare
PS417_16520 -0.5 -1.3 cold-shock protein compare
PS417_24785 -0.5 -1.5 nucleoside-diphosphate sugar epimerase compare
PS417_25720 -0.5 -2.8 anthranilate synthase component II compare
PS417_09930 -0.5 -1.3 hypothetical protein compare
PS417_27610 -0.5 -2.4 hypothetical protein compare
PS417_06735 -0.5 -1.6 3-oxoadipate enol-lactonase compare
PS417_02690 -0.5 -2.3 N-acylglucosamine 2-epimerase compare
PS417_17755 -0.5 -1.7 hypothetical protein compare
PS417_05575 -0.5 -3.8 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_05525 -0.5 -2.8 Fis family transcriptional regulator compare
PS417_24800 -0.5 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_07565 -0.5 -1.1 hypothetical protein compare
PS417_22085 -0.5 -1.8 aldehyde dehydrogenase compare
PS417_23545 -0.5 -1.1 gamma-glutamyl kinase compare
PS417_15325 -0.5 -1.0 type VI secretion protein compare
PS417_11720 -0.5 -1.9 class V aminotransferase compare
PS417_04420 -0.5 -3.8 histidinol dehydrogenase compare
PS417_04965 -0.5 -0.7 hypothetical protein compare
PS417_18540 -0.5 -2.2 colicin V production CvpA compare
PS417_01290 -0.5 -1.3 ADP-ribose diphosphatase compare
PS417_22620 -0.5 -1.9 pyruvate kinase compare
PS417_00755 -0.5 -0.6 biofilm PGA synthesis protein PgaD compare
PS417_00550 -0.5 -0.8 hypothetical protein compare
PS417_18355 -0.5 -3.6 DNA-binding protein compare
PS417_05105 -0.5 -1.9 membrane protein compare
PS417_28230 -0.5 -1.8 transcriptional regulator compare
PS417_20130 -0.5 -4.2 dehydrogenase compare
PS417_23370 -0.5 -1.9 protoheme IX farnesyltransferase compare
PS417_15090 -0.5 -0.7 hypothetical protein compare
PS417_09085 -0.5 -1.1 hypothetical protein compare
PS417_26520 -0.5 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_04375 -0.5 -0.6 ABC transporter ATP-binding protein compare
PS417_19285 -0.5 -1.2 ankyrin compare
PS417_02895 -0.5 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_26240 -0.5 -1.3 N-methylproline demethylase compare
PS417_08650 -0.5 -2.0 transcriptional regulator compare
PS417_15885 -0.5 -1.0 GCN5 family acetyltransferase compare
PS417_15750 -0.5 -1.5 protease compare
PS417_24705 -0.5 -1.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_09595 -0.5 -2.2 membrane protein compare
PS417_15115 -0.5 -1.6 exonuclease SbcD compare
PS417_15535 -0.5 -1.3 oxidoreductase compare
PS417_02950 -0.5 -1.6 tRNA-dihydrouridine synthase B compare
PS417_18235 -0.5 -2.0 nitrile hydratase compare
PS417_18630 -0.5 -1.8 tRNA-dihydrouridine synthase C compare
PS417_06245 -0.5 -0.6 zinc metallopeptidase RseP compare
PS417_27245 -0.5 -1.0 aminotransferase DegT compare
PS417_01685 -0.5 -1.7 membrane protein compare
PS417_11540 -0.5 -1.9 NAD synthetase compare
PS417_12380 -0.5 -2.4 peptidase S54 compare
PS417_14140 -0.5 -1.4 membrane protein compare
PS417_24115 -0.5 -1.1 hypothetical protein compare
PS417_05210 -0.5 -2.5 copper oxidase compare
PS417_28085 -0.5 -3.6 phosphate-binding protein compare
PS417_09615 -0.5 -2.4 glycosyl transferase family 1 compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Fraxetin across organisms