Experiment set32S554 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 0.5 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27795 -3.4 -1.4 orotate phosphoribosyltransferase compare
PS417_23915 -3.2 -5.0 pantoate--beta-alanine ligase compare
PS417_04365 -2.6 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04380 -2.5 -1.7 ABC transporter permease compare
PS417_28050 -2.4 -2.6 hypothetical protein compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_06680 -1.9 -5.6 nuclease PIN compare
PS417_02485 -1.5 -2.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08025 -1.4 -1.9 acetylornithine aminotransferase compare
PS417_08155 -1.3 -1.5 integration host factor subunit beta compare
PS417_26775 -1.3 -6.7 thiazole synthase compare
PS417_26990 -1.3 -0.8 RNA pyrophosphohydrolase compare
PS417_08435 -1.3 -1.9 pilus assembly protein PilZ compare
PS417_19350 -1.2 -4.5 GTP cyclohydrolase compare
PS417_24605 -1.2 -3.6 thiamine-phosphate pyrophosphorylase compare
PS417_00660 -1.1 -3.4 DSBA oxidoreductase compare
PS417_10645 -1.1 -3.2 magnesium ABC transporter ATPase compare
PS417_26730 -1.1 -0.8 pyrroline-5-carboxylate reductase compare
PS417_04385 -1.1 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_27870 -1.1 -2.3 ATP-dependent DNA helicase RecG compare
PS417_14140 -1.0 -2.8 membrane protein compare
PS417_02555 -1.0 -6.3 exoribonuclease R compare
PS417_22570 -1.0 -0.9 H-NS histone compare
PS417_08540 -1.0 -2.2 RNA helicase compare
PS417_02270 -1.0 -2.2 carbamoyltransferase compare
PS417_20855 -1.0 -0.9 hypothetical protein compare
PS417_23810 -1.0 -5.4 acetolactate synthase 3 catalytic subunit compare
PS417_19415 -1.0 -1.3 allantoinase compare
PS417_06245 -1.0 -1.3 zinc metallopeptidase RseP compare
PS417_28070 -1.0 -4.8 phosphate ABC transporter ATP-binding protein compare
PS417_24710 -1.0 -5.0 lipoprotein compare
PS417_03260 -1.0 -0.9 5S ribosomal RNA compare
PS417_27245 -1.0 -1.9 aminotransferase DegT compare
PS417_23910 -0.9 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_27705 -0.9 -1.8 amino acid dehydrogenase compare
PS417_21480 -0.9 -1.3 23S rRNA pseudouridylate synthase compare
PS417_27195 -0.9 -1.4 N-acetylglutamate synthase compare
PS417_24600 -0.9 -4.9 hydrogenase compare
PS417_22450 -0.9 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_02255 -0.9 -2.0 lipopolysaccharide kinase compare
PS417_13205 -0.9 -1.7 isochorismate-pyruvate lyase compare
PS417_19605 -0.9 -1.3 hypothetical protein compare
PS417_06145 -0.8 -1.2 hypothetical protein compare
PS417_02385 -0.8 -1.5 esterase compare
PS417_11440 -0.8 -1.9 hypothetical protein compare
PS417_24745 -0.8 -1.8 gamma-glutamyl phosphate reductase compare
PS417_06895 -0.8 -2.2 DNA-binding protein compare
PS417_25710 -0.8 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_23805 -0.8 -2.4 acetolactate synthase 3 regulatory subunit compare
PS417_11615 -0.8 -1.7 urea ABC transporter ATP-binding protein compare
PS417_13140 -0.8 -1.5 oxidoreductase compare
PS417_07640 -0.8 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_07565 -0.8 -1.8 hypothetical protein compare
PS417_04390 -0.8 -2.0 toluene tolerance protein compare
PS417_03935 -0.7 -1.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_10145 -0.7 -2.2 hypothetical protein compare
PS417_02415 -0.7 -2.9 phosphoserine phosphatase compare
PS417_15885 -0.7 -1.2 GCN5 family acetyltransferase compare
PS417_02950 -0.7 -1.5 tRNA-dihydrouridine synthase B compare
PS417_28515 -0.7 -2.1 16S rRNA methyltransferase compare
PS417_15065 -0.7 -1.9 GntR family transcriptional regulator compare
PS417_22445 -0.7 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_16510 -0.7 -3.5 Clp protease ClpX compare
PS417_09470 -0.7 -1.1 hypothetical protein compare
PS417_09830 -0.7 -2.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_27425 -0.7 -3.6 exopolyphosphatase compare
PS417_19955 -0.7 -1.3 hypothetical protein compare
PS417_28080 -0.7 -5.5 phosphate ABC transporter permease compare
PS417_04990 -0.7 -2.2 GIY-YIG nuclease compare
PS417_18425 -0.7 -1.2 sporulation protein compare
PS417_15400 -0.7 -1.4 hypothetical protein compare
PS417_23380 -0.7 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_09865 -0.7 -1.7 hypothetical protein compare
PS417_05445 -0.7 -1.2 DNA mismatch repair protein MutT compare
PS417_06335 -0.7 -1.2 S-formylglutathione hydrolase compare
PS417_15805 -0.7 -1.4 transporter compare
PS417_16720 -0.7 -1.0 membrane protein compare
PS417_19520 -0.7 -2.1 transcriptional regulator compare
PS417_20775 -0.7 -2.5 coproporphyrinogen III oxidase compare
PS417_07940 -0.7 -1.6 hypothetical protein compare
PS417_23385 -0.7 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_24315 -0.7 -2.5 catalase compare
PS417_06945 -0.7 -0.9 membrane protein compare
PS417_17215 -0.7 -1.5 peptidylprolyl isomerase compare
PS417_04170 -0.6 -2.3 stringent starvation protein A compare
PS417_21425 -0.6 -1.1 4-amino-4-deoxychorismate lyase compare
PS417_01920 -0.6 -0.8 ATP-dependent protease subunit HslV compare
PS417_23775 -0.6 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_24525 -0.6 -1.2 nuclease compare
PS417_21400 -0.6 -2.7 TetR family transcriptional regulator compare
PS417_17440 -0.6 -1.4 beta-lactamase compare
PS417_24935 -0.6 -0.9 hypothetical protein compare
PS417_12595 -0.6 -1.1 transcriptional regulator compare
PS417_00345 -0.6 -1.5 copper-binding protein compare
PS417_24225 -0.6 -1.2 hypothetical protein compare
PS417_00655 -0.6 -3.4 DSBA oxidoreductase compare
PS417_13990 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_07305 -0.6 -1.6 3-beta hydroxysteroid dehydrogenase compare
PS417_28145 -0.6 -1.6 AraC family transcriptional regulator compare
PS417_05695 -0.6 -2.3 transcriptional regulator compare
PS417_05025 -0.6 -1.2 maleylacetoacetate isomerase compare
PS417_23390 -0.6 -3.3 ubiquinol oxidase subunit II compare
PS417_22530 -0.6 -2.9 hypothetical protein compare
PS417_23370 -0.6 -2.0 protoheme IX farnesyltransferase compare
PS417_25320 -0.6 -3.7 dTDP-4-dehydrorhamnose reductase compare
PS417_23900 -0.6 -3.4 poly(A) polymerase compare
PS417_01290 -0.6 -1.4 ADP-ribose diphosphatase compare
PS417_09210 -0.6 -1.2 TetR family transcriptional regulator compare
PS417_10675 -0.6 -0.9 TetR family transcriptional regulator compare
PS417_08135 -0.6 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21105 -0.6 -3.4 aminodeoxychorismate synthase compare
PS417_26550 -0.6 -2.4 ABC transporter compare
PS417_05575 -0.6 -3.0 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_25720 -0.6 -3.3 anthranilate synthase component II compare
PS417_08770 -0.6 -2.3 hypothetical protein compare
PS417_11055 -0.6 -1.8 AraC family transcriptional regulator compare
PS417_27065 -0.6 -2.3 hypothetical protein compare
PS417_14940 -0.6 -1.2 LysR family transcriptional regulator compare
PS417_25290 -0.5 -1.0 hypothetical protein compare
PS417_27315 -0.5 -0.7 hypothetical protein compare
PS417_19600 -0.5 -0.9 exonuclease compare
PS417_05815 -0.5 -2.0 recombinase RecA compare
PS417_07615 -0.5 -2.0 TetR family transcriptional regulator compare
PS417_10860 -0.5 -1.8 flagellar basal body rod protein FlgG compare
PS417_18235 -0.5 -1.7 nitrile hydratase compare
PS417_06880 -0.5 -2.0 RNA polymerase sigma factor compare
PS417_07620 -0.5 -1.0 beta-hexosaminidase compare
PS417_06745 -0.5 -1.5 polysaccharide deacetylase compare
PS417_28230 -0.5 -1.8 transcriptional regulator compare
PS417_06355 -0.5 -1.5 protein-L-isoaspartate O-methyltransferase compare
PS417_14985 -0.5 -1.2 Fe-S protein compare
PS417_23725 -0.5 -1.0 methylmalonate-semialdehyde dehydrogenase compare
PS417_02880 -0.5 -0.9 copper chaperone compare
PS417_02820 -0.5 -1.1 urea ABC transporter ATP-binding protein compare
PS417_13660 -0.5 -1.8 AsnC family transcriptional regulator compare
PS417_02455 -0.5 -2.6 putative transporter, required for glycine utilization (from data) compare
PS417_04270 -0.5 -3.5 ribonuclease G compare
PS417_17860 -0.5 -1.6 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_26255 -0.5 -2.2 hypothetical protein compare
PS417_14515 -0.5 -1.0 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_02575 -0.5 -1.2 membrane protein compare
PS417_18690 -0.5 -1.7 aromatic amino acid aminotransferase compare
PS417_26155 -0.5 -0.5 hypothetical protein compare
PS417_07865 -0.5 -1.4 hypothetical protein compare
PS417_20705 -0.5 -1.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_22705 -0.5 -1.6 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_10710 -0.5 -1.4 GNAT family acetyltransferase compare
PS417_06540 -0.5 -0.5 membrane protein compare
PS417_13900 -0.5 -1.5 chemotaxis protein CheR compare
PS417_26850 -0.5 -0.6 twin-arginine translocation pathway signal protein compare
PS417_23015 -0.5 -1.4 NGG1p interacting factor 3 protein, NIF3 compare
PS417_15510 -0.5 -1.2 hypothetical protein compare
PS417_22260 -0.5 -1.8 segregation and condensation protein B compare
PS417_17795 -0.5 -1.2 ABC transporter permease compare
PS417_19160 -0.5 -2.4 hypothetical protein compare
PS417_12005 -0.5 -1.6 hypothetical protein compare
PS417_09575 -0.5 -1.4 glutathione S-transferase compare
PS417_26275 -0.5 -1.4 glycine/betaine ABC transporter substrate-binding protein compare
PS417_19065 -0.5 -0.6 monooxygenase compare
PS417_14950 -0.5 -1.8 structural protein MipA compare
PS417_16495 -0.5 -1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_08220 -0.5 -0.6 epimerase compare
PS417_18460 -0.5 -1.6 transcriptional regulator compare
PS417_01580 -0.5 -0.9 imidazole glycerol phosphate synthase compare
PS417_00665 -0.5 -3.1 RND transporter compare
PS417_17680 -0.4 -0.8 ABC transporter compare
PS417_08580 -0.4 -1.7 histidine kinase compare
PS417_17645 -0.4 -0.7 RND transporter compare
PS417_21250 -0.4 -2.7 hypothetical protein compare
PS417_01825 -0.4 -1.3 chemotaxis protein compare
PS417_28075 -0.4 -2.0 phosphate ABC transporter permease compare
PS417_10245 -0.4 -0.9 hypothetical protein compare
PS417_23615 -0.4 -1.4 sulfate transporter compare
PS417_06490 -0.4 -2.0 hypothetical protein compare
PS417_08990 -0.4 -1.3 ABC transporter substrate-binding protein compare
PS417_11805 -0.4 -2.0 D-threo-aldose 1-dehydrogenase compare
PS417_01310 -0.4 -1.2 ATPase compare
PS417_20715 -0.4 -0.9 cytochrome Cbb3 compare
PS417_01850 -0.4 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27485 -0.4 -2.5 hypothetical protein compare
PS417_00475 -0.4 -2.2 membrane protein compare
PS417_01955 -0.4 -2.9 peptidase compare
PS417_26815 -0.4 -1.0 peptidase M16 compare
PS417_23575 -0.4 -1.9 hypothetical protein compare
PS417_17415 -0.4 -1.7 histidine kinase compare
PS417_03380 -0.4 -0.7 hypothetical protein compare
PS417_06835 -0.4 -1.5 phospholipase compare
PS417_09150 -0.4 -1.0 energy transducer TonB compare
PS417_11380 -0.4 -1.1 peptidylprolyl isomerase compare
PS417_04420 -0.4 -2.9 histidinol dehydrogenase compare
PS417_12660 -0.4 -0.8 hypothetical protein compare
PS417_04865 -0.4 -1.9 molybdenum cofactor biosynthesis protein MoaC compare
PS417_26300 -0.4 -1.6 hypothetical protein compare
PS417_07575 -0.4 -1.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_00180 -0.4 -0.8 tryptophan synthase subunit alpha compare
PS417_08760 -0.4 -2.3 metalloprotease compare
PS417_21780 -0.4 -1.6 argininosuccinate lyase compare
PS417_02115 -0.4 -2.3 acyltransferase compare
PS417_07360 -0.4 -2.2 ArtI protein compare
PS417_26465 -0.4 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Fraxetin across organisms