Experiment set32S553 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_27300 -4.3 -1.8 cell division protein ZapA compare
PS417_27135 -3.8 -1.6 glutamine synthetase compare
PS417_23545 -3.4 -2.9 gamma-glutamyl kinase compare
PS417_02280 -2.9 -2.1 GlcNAc-PI de-N-acetylase compare
PS417_17215 -2.8 -2.9 peptidylprolyl isomerase compare
PS417_22570 -2.5 -1.4 H-NS histone compare
PS417_23380 -2.5 -3.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_23950 -2.4 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_28050 -2.4 -1.8 hypothetical protein compare
PS417_10645 -2.3 -7.2 magnesium ABC transporter ATPase compare
PS417_26990 -2.1 -1.2 RNA pyrophosphohydrolase compare
PS417_21480 -2.1 -1.8 23S rRNA pseudouridylate synthase compare
PS417_22450 -2.1 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_00920 -2.0 -7.4 diguanylate cyclase compare
PS417_27835 -2.0 -7.5 endoribonuclease compare
PS417_23915 -2.0 -2.4 pantoate--beta-alanine ligase compare
PS417_26730 -2.0 -1.1 pyrroline-5-carboxylate reductase compare
PS417_03260 -1.9 -1.5 5S ribosomal RNA compare
PS417_18545 -1.9 -3.5 cell division protein compare
PS417_22565 -1.8 -0.7 formyltetrahydrofolate deformylase compare
PS417_06375 -1.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_20880 -1.8 -3.5 GntR family transcriptional regulator compare
PS417_23385 -1.7 -8.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_01855 -1.6 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_26850 -1.6 -1.3 twin-arginine translocation pathway signal protein compare
PS417_27870 -1.6 -2.6 ATP-dependent DNA helicase RecG compare
PS417_07615 -1.6 -4.9 TetR family transcriptional regulator compare
PS417_24600 -1.6 -6.1 hydrogenase compare
PS417_20715 -1.6 -2.2 cytochrome Cbb3 compare
PS417_04365 -1.5 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_24935 -1.5 -1.5 hypothetical protein compare
PS417_12005 -1.5 -3.2 hypothetical protein compare
PS417_06680 -1.5 -4.5 nuclease PIN compare
PS417_16555 -1.5 -1.3 cupin compare
PS417_24385 -1.4 -6.0 tRNA (uracil-5-)-methyltransferase compare
PS417_26775 -1.4 -5.9 thiazole synthase compare
PS417_04475 -1.4 -3.5 hypothetical protein compare
PS417_22935 -1.4 -3.0 hypothetical protein compare
PS417_02475 -1.3 -2.9 N-acetylmuramoyl-L-alanine amidase compare
PS417_02950 -1.3 -3.1 tRNA-dihydrouridine synthase B compare
PS417_09470 -1.3 -1.6 hypothetical protein compare
PS417_21625 -1.3 -1.3 DNA-binding protein compare
PS417_24710 -1.3 -8.6 lipoprotein compare
PS417_23375 -1.3 -2.1 cytochrome C oxidase compare
PS417_16510 -1.3 -4.8 Clp protease ClpX compare
PS417_27245 -1.3 -1.9 aminotransferase DegT compare
PS417_23820 -1.3 -5.0 hypothetical protein compare
PS417_08540 -1.3 -2.3 RNA helicase compare
PS417_22205 -1.3 -6.3 potassium transporter TrkH compare
PS417_18780 -1.3 -2.1 flavin reductase compare
PS417_01185 -1.2 -4.6 ribosomal protein S6 modification protein compare
PS417_04590 -1.2 -3.6 methyltransferase compare
PS417_27605 -1.2 -6.0 hypothetical protein compare
PS417_00080 -1.2 -4.0 potassium transporter peripheral membrane component compare
PS417_01575 -1.2 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_07120 -1.2 -4.6 RNA polymerase sigma-H factor compare
PS417_20855 -1.2 -1.6 hypothetical protein compare
PS417_26985 -1.2 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19600 -1.2 -0.9 exonuclease compare
PS417_08170 -1.2 -6.2 capsular biosynthesis protein compare
PS417_22400 -1.2 -6.8 7-cyano-7-deazaguanine synthase compare
PS417_00370 -1.2 -1.1 hypothetical protein compare
PS417_15090 -1.2 -2.8 hypothetical protein compare
PS417_02555 -1.1 -6.2 exoribonuclease R compare
PS417_07470 -1.1 -1.8 hypothetical protein compare
PS417_16370 -1.1 -5.9 chemotaxis protein CheY compare
PS417_07875 -1.1 -1.2 hypothetical protein compare
PS417_04380 -1.1 -0.9 ABC transporter permease compare
PS417_23025 -1.1 -3.7 murein transglycosylase compare
PS417_05985 -1.1 -2.4 chemotaxis protein CheY compare
PS417_01600 -1.1 -3.0 peptidase M23 compare
PS417_00510 -1.1 -1.5 membrane protein compare
PS417_18355 -1.1 -4.5 DNA-binding protein compare
PS417_21430 -1.1 -1.4 3-oxoacyl-ACP synthase compare
PS417_02975 -1.1 -4.3 3-dehydroquinate dehydratase compare
PS417_25320 -1.1 -5.6 dTDP-4-dehydrorhamnose reductase compare
PS417_04390 -1.1 -1.6 toluene tolerance protein compare
PS417_01565 -1.1 -3.6 imidazole glycerol phosphate synthase compare
PS417_22620 -1.1 -3.0 pyruvate kinase compare
PS417_06075 -1.1 -1.8 hypothetical protein compare
PS417_00385 -1.1 -1.3 Fur family transcriptional regulator compare
PS417_26800 -1.0 -5.2 cell division protein FtsX compare
PS417_10265 -1.0 -3.2 peptidase compare
PS417_24745 -1.0 -2.0 gamma-glutamyl phosphate reductase compare
PS417_15110 -1.0 -3.8 protein BatD compare
PS417_08990 -1.0 -3.0 ABC transporter substrate-binding protein compare
PS417_20705 -1.0 -2.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_25270 -1.0 -2.4 NrdR family transcriptional regulator compare
PS417_06205 -1.0 -6.2 methionine aminopeptidase compare
PS417_19350 -1.0 -3.8 GTP cyclohydrolase compare
PS417_23390 -1.0 -4.6 ubiquinol oxidase subunit II compare
PS417_04595 -1.0 -1.8 cell division protein MraZ compare
PS417_01560 -1.0 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_24615 -0.9 -1.2 hypothetical protein compare
PS417_27360 -0.9 -4.1 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_27040 -0.9 -2.1 3-phosphoglycerate dehydrogenase compare
PS417_15095 -0.9 -1.5 hypothetical protein compare
PS417_22405 -0.9 -6.3 7-carboxy-7-deazaguanine synthase compare
PS417_21425 -0.9 -2.0 4-amino-4-deoxychorismate lyase compare
PS417_10720 -0.9 -4.5 chemotaxis protein CheY compare
PS417_13510 -0.9 -1.0 polyketide cyclase compare
PS417_25720 -0.9 -5.1 anthranilate synthase component II compare
PS417_01580 -0.9 -1.3 imidazole glycerol phosphate synthase compare
PS417_02270 -0.9 -2.2 carbamoyltransferase compare
PS417_09600 -0.9 -2.2 glycosyl transferase family 1 compare
PS417_15135 -0.9 -1.7 hypothetical protein compare
PS417_12805 -0.9 -5.7 glycogen branching protein compare
PS417_24705 -0.9 -2.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_28510 -0.9 -4.5 chromosome partitioning protein compare
PS417_18540 -0.9 -2.9 colicin V production CvpA compare
PS417_09830 -0.9 -4.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_24605 -0.9 -2.2 thiamine-phosphate pyrophosphorylase compare
PS417_15935 -0.9 -1.8 Rrf2 family transcriptional regulator compare
PS417_02675 -0.9 -3.2 ABC transporter ATP-binding protein compare
PS417_02880 -0.8 -1.1 copper chaperone compare
PS417_19415 -0.8 -1.8 allantoinase compare
PS417_12310 -0.8 -4.2 methionine synthase compare
PS417_25225 -0.8 -2.0 MFS transporter compare
PS417_12735 -0.8 -1.9 peroxidase compare
PS417_03705 -0.8 -2.7 2-alkenal reductase compare
PS417_05100 -0.8 -1.8 RNA polymerase sigma factor compare
PS417_08155 -0.8 -0.8 integration host factor subunit beta compare
PS417_26420 -0.8 -1.6 hypothetical protein compare
PS417_07710 -0.8 -1.8 membrane protein compare
PS417_06335 -0.8 -2.4 S-formylglutathione hydrolase compare
PS417_26770 -0.8 -2.3 tRNA (guanine-N7)-methyltransferase compare
PS417_27425 -0.8 -3.2 exopolyphosphatase compare
PS417_10675 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_04585 -0.8 -1.2 hypothetical protein compare
PS417_00705 -0.8 -1.5 MarR family transcriptional regulator compare
PS417_01915 -0.8 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_07305 -0.8 -1.9 3-beta hydroxysteroid dehydrogenase compare
PS417_07695 -0.8 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_16105 -0.8 -1.8 LysR family transcriptional regulator compare
PS417_27610 -0.7 -4.2 hypothetical protein compare
PS417_21515 -0.7 -4.6 transcriptional regulator compare
PS417_08090 -0.7 -0.7 3-oxoacyl-ACP reductase compare
PS417_19055 -0.7 -2.4 ArsR family transcriptional regulator compare
PS417_22350 -0.7 -1.7 Fis family transcriptional regulator compare
PS417_14605 -0.7 -2.3 adenylate kinase compare
PS417_10275 -0.7 -1.7 histidine kinase compare
PS417_24675 -0.7 -1.3 lipoyl synthase compare
PS417_26220 -0.7 -1.7 Rieske (2Fe-2S) protein compare
PS417_00085 -0.7 -1.5 16S rRNA methyltransferase compare
PS417_20875 -0.7 -2.3 chromosome segregation protein SMC compare
PS417_01850 -0.7 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_16490 -0.7 -0.7 cell division protein FtsK compare
PS417_02070 -0.7 -0.9 membrane protein compare
PS417_16255 -0.7 -1.8 RNA polymerase sigma factor compare
PS417_13620 -0.7 -1.1 thermostable hemolysin compare
PS417_17455 -0.7 -2.4 cytochrome C compare
PS417_09210 -0.7 -1.2 TetR family transcriptional regulator compare
PS417_20635 -0.7 -0.9 ABC transporter ATP-binding protein compare
PS417_23370 -0.7 -2.0 protoheme IX farnesyltransferase compare
PS417_21105 -0.7 -4.1 aminodeoxychorismate synthase compare
PS417_11475 -0.7 -1.9 membrane protein compare
PS417_01955 -0.7 -4.4 peptidase compare
PS417_26480 -0.7 -3.1 membrane protein compare
PS417_06365 -0.7 -4.0 RNA polymerase sigma factor compare
PS417_07170 -0.7 -2.1 hypothetical protein compare
PS417_19650 -0.7 -2.4 chemotaxis protein CheW compare
PS417_06245 -0.7 -0.8 zinc metallopeptidase RseP compare
PS417_19995 -0.7 -3.2 Long-chain fatty acid transport protein compare
PS417_04875 -0.7 -0.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26760 -0.7 -1.8 oxidase compare
PS417_02485 -0.7 -1.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_19605 -0.7 -0.7 hypothetical protein compare
PS417_08625 -0.7 -2.0 membrane protein compare
PS417_26270 -0.7 -1.3 AraC family transcriptional regulator compare
PS417_12535 -0.7 -1.9 nitrilase compare
PS417_04420 -0.6 -3.1 histidinol dehydrogenase compare
PS417_08945 -0.6 -3.2 heat shock protein 90 compare
PS417_21695 -0.6 -1.7 succinylglutamate-semialdehyde dehydrogenase compare
PS417_27295 -0.6 -2.7 hypothetical protein compare
PS417_21855 -0.6 -2.0 hypothetical protein compare
PS417_16885 -0.6 -1.6 hypothetical protein compare
PS417_24380 -0.6 -2.8 guanine permease compare
PS417_04170 -0.6 -2.2 stringent starvation protein A compare
PS417_19305 -0.6 -2.1 acireductone dioxygenase compare
PS417_10455 -0.6 -2.1 membrane protein compare
PS417_19160 -0.6 -2.2 hypothetical protein compare
PS417_24885 -0.6 -2.6 transcriptional regulator compare
PS417_18235 -0.6 -2.1 nitrile hydratase compare
PS417_01795 -0.6 -4.5 glucosyltransferase MdoH compare
PS417_15105 -0.6 -2.6 membrane protein compare
PS417_27815 -0.6 -1.1 hypothetical protein compare
PS417_24780 -0.6 -4.5 peptidase C13 compare
PS417_27640 -0.6 -0.9 TetR family transcriptional regulator compare
PS417_06770 -0.6 -3.2 multidrug transporter compare
PS417_06200 -0.6 -3.2 protein-PII uridylyltransferase compare
PS417_06635 -0.6 -1.1 ferredoxin compare
PS417_03560 -0.6 -0.8 GTP-binding protein compare
PS417_17380 -0.6 -1.3 membrane protein compare
PS417_01790 -0.6 -3.4 glucan biosynthesis protein G compare
PS417_18425 -0.6 -1.0 sporulation protein compare
PS417_05475 -0.6 -2.9 arginase compare
PS417_24115 -0.6 -0.7 hypothetical protein compare
PS417_03515 -0.6 -1.3 type III secretion protein compare
PS417_20030 -0.6 -1.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_06775 -0.6 -2.5 antibiotic transporter compare


Specific Phenotypes

For 5 genes in this experiment

For liquid stress Scopoletin in Pseudomonas simiae WCS417

For liquid stress Scopoletin across organisms