Experiment set32S552 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -3.5 -5.7 pantoate--beta-alanine ligase compare
PS417_28050 -3.1 -2.4 hypothetical protein compare
PS417_03260 -2.8 -1.4 5S ribosomal RNA compare
PS417_06680 -2.5 -5.5 nuclease PIN compare
PS417_18310 -2.4 -1.6 hypothetical protein compare
PS417_00920 -2.3 -6.7 diguanylate cyclase compare
PS417_00385 -2.1 -1.9 Fur family transcriptional regulator compare
PS417_07615 -2.0 -6.6 TetR family transcriptional regulator compare
PS417_26730 -2.0 -1.1 pyrroline-5-carboxylate reductase compare
PS417_07470 -1.9 -1.9 hypothetical protein compare
PS417_20715 -1.9 -2.5 cytochrome Cbb3 compare
PS417_08125 -1.8 -0.7 prephenate dehydratase compare
PS417_26775 -1.8 -8.1 thiazole synthase compare
PS417_19350 -1.8 -5.0 GTP cyclohydrolase compare
PS417_22570 -1.7 -1.2 H-NS histone compare
PS417_27195 -1.6 -1.6 N-acetylglutamate synthase compare
PS417_21480 -1.6 -1.5 23S rRNA pseudouridylate synthase compare
PS417_10645 -1.6 -4.7 magnesium ABC transporter ATPase compare
PS417_04365 -1.5 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02880 -1.4 -1.8 copper chaperone compare
PS417_00370 -1.4 -1.2 hypothetical protein compare
PS417_21430 -1.4 -1.5 3-oxoacyl-ACP synthase compare
PS417_04385 -1.4 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_27870 -1.4 -2.2 ATP-dependent DNA helicase RecG compare
PS417_10675 -1.4 -1.5 TetR family transcriptional regulator compare
PS417_18545 -1.3 -3.3 cell division protein compare
PS417_24600 -1.3 -4.0 hydrogenase compare
PS417_24710 -1.3 -7.8 lipoprotein compare
PS417_27835 -1.3 -4.5 endoribonuclease compare
PS417_24745 -1.2 -2.3 gamma-glutamyl phosphate reductase compare
PS417_27795 -1.2 -0.7 orotate phosphoribosyltransferase compare
PS417_02555 -1.2 -6.7 exoribonuclease R compare
PS417_27135 -1.2 -0.8 glutamine synthetase compare
PS417_16555 -1.2 -1.4 cupin compare
PS417_24620 -1.1 -1.9 hypothetical protein compare
PS417_04380 -1.1 -1.0 ABC transporter permease compare
PS417_02485 -1.1 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_26990 -1.1 -0.8 RNA pyrophosphohydrolase compare
PS417_08155 -1.1 -1.4 integration host factor subunit beta compare
PS417_22450 -1.1 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_27865 -1.1 -2.1 LysR family transcriptional regulator compare
PS417_23950 -1.0 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_20855 -1.0 -1.1 hypothetical protein compare
PS417_22620 -1.0 -3.4 pyruvate kinase compare
PS417_23380 -1.0 -2.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_26420 -1.0 -1.6 hypothetical protein compare
PS417_23995 -1.0 -0.9 preprotein translocase subunit SecG compare
PS417_19645 -1.0 -3.1 chemotaxis protein compare
PS417_06075 -1.0 -1.6 hypothetical protein compare
PS417_25320 -1.0 -6.6 dTDP-4-dehydrorhamnose reductase compare
PS417_22530 -1.0 -3.7 hypothetical protein compare
PS417_03970 -1.0 -1.7 1-phosphofructokinase compare
PS417_02270 -0.9 -2.7 carbamoyltransferase compare
PS417_08170 -0.9 -5.0 capsular biosynthesis protein compare
PS417_01855 -0.9 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_05595 -0.9 -5.8 ornithine carbamoyltransferase compare
PS417_23545 -0.9 -1.7 gamma-glutamyl kinase compare
PS417_14905 -0.9 -1.5 C4-dicarboxylate ABC transporter compare
PS417_02255 -0.9 -2.3 lipopolysaccharide kinase compare
PS417_15325 -0.9 -1.4 type VI secretion protein compare
PS417_20785 -0.9 -1.8 transcriptional regulator compare
PS417_23385 -0.9 -4.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_23375 -0.9 -1.5 cytochrome C oxidase compare
PS417_27245 -0.9 -1.6 aminotransferase DegT compare
PS417_27605 -0.9 -4.7 hypothetical protein compare
PS417_08540 -0.9 -1.8 RNA helicase compare
PS417_04595 -0.9 -1.6 cell division protein MraZ compare
PS417_27705 -0.9 -1.4 amino acid dehydrogenase compare
PS417_23370 -0.9 -2.2 protoheme IX farnesyltransferase compare
PS417_27040 -0.9 -1.7 3-phosphoglycerate dehydrogenase compare
PS417_20880 -0.8 -2.4 GntR family transcriptional regulator compare
PS417_01435 -0.8 -1.3 hypothetical protein compare
PS417_19995 -0.8 -4.7 Long-chain fatty acid transport protein compare
PS417_22575 -0.8 -5.0 exonuclease I compare
PS417_27785 -0.8 -3.1 phosphoglucomutase compare
PS417_05975 -0.8 -0.6 chemotaxis protein CheW compare
PS417_15560 -0.8 -2.0 hypothetical protein compare
PS417_06365 -0.8 -3.8 RNA polymerase sigma factor compare
PS417_03815 -0.8 -2.2 DNA transporter compare
PS417_22690 -0.8 -1.7 phosphogluconate dehydratase compare
PS417_09210 -0.8 -1.7 TetR family transcriptional regulator compare
PS417_06895 -0.8 -2.3 DNA-binding protein compare
PS417_13425 -0.8 -1.3 cupin compare
PS417_02110 -0.8 -1.6 acyl carrier protein compare
PS417_06200 -0.8 -3.4 protein-PII uridylyltransferase compare
PS417_21105 -0.8 -4.6 aminodeoxychorismate synthase compare
PS417_09595 -0.8 -3.5 membrane protein compare
PS417_04180 -0.8 -2.6 GntR family transcriptional regulator compare
PS417_13620 -0.8 -1.5 thermostable hemolysin compare
PS417_04390 -0.8 -1.5 toluene tolerance protein compare
PS417_05125 -0.8 -3.1 sugar ABC transporter substrate-binding protein compare
PS417_08090 -0.8 -0.7 3-oxoacyl-ACP reductase compare
PS417_21425 -0.7 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_04585 -0.7 -1.1 hypothetical protein compare
PS417_01915 -0.7 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_17155 -0.7 -2.0 cytochrome B561 compare
PS417_16370 -0.7 -4.5 chemotaxis protein CheY compare
PS417_10600 -0.7 -1.2 hypothetical protein compare
PS417_25915 -0.7 -2.1 carbon-nitrogen hydrolase compare
PS417_12310 -0.7 -3.0 methionine synthase compare
PS417_02210 -0.7 -3.0 diguanylate cyclase compare
PS417_28510 -0.7 -3.0 chromosome partitioning protein compare
PS417_01825 -0.7 -1.9 chemotaxis protein compare
PS417_25720 -0.7 -4.2 anthranilate synthase component II compare
PS417_24605 -0.7 -1.5 thiamine-phosphate pyrophosphorylase compare
PS417_24935 -0.7 -0.8 hypothetical protein compare
PS417_01575 -0.7 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_07940 -0.7 -1.9 hypothetical protein compare
PS417_18250 -0.7 -1.9 chemotaxis protein compare
PS417_09630 -0.7 -3.3 glycosyl transferase compare
PS417_03385 -0.7 -1.1 flavin reductase compare
PS417_19675 -0.7 -1.7 chemotaxis protein CheY compare
PS417_23820 -0.7 -2.6 hypothetical protein compare
PS417_06775 -0.7 -2.9 antibiotic transporter compare
PS417_16850 -0.7 -2.3 cation:proton antiporter compare
PS417_09600 -0.7 -2.6 glycosyl transferase family 1 compare
PS417_05985 -0.7 -1.7 chemotaxis protein CheY compare
PS417_00080 -0.7 -3.2 potassium transporter peripheral membrane component compare
PS417_11075 -0.7 -1.9 hydroxypyruvate isomerase compare
PS417_22445 -0.7 -1.4 ATP-dependent DNA helicase RuvB compare
PS417_01920 -0.7 -0.7 ATP-dependent protease subunit HslV compare
PS417_22400 -0.7 -3.7 7-cyano-7-deazaguanine synthase compare
PS417_22610 -0.6 -3.0 pilus assembly protein PilZ compare
PS417_05735 -0.6 -2.4 tail fiber protein compare
PS417_10305 -0.6 -1.4 hypothetical protein compare
PS417_01270 -0.6 -1.5 iron ABC transporter substrate-binding protein compare
PS417_26995 -0.6 -3.3 phosphoserine phosphatase compare
PS417_11810 -0.6 -2.2 oxidoreductase compare
PS417_09200 -0.6 -2.0 ABC transporter compare
PS417_20700 -0.6 -3.3 cbb3-type cytochrome c oxidase subunit I compare
PS417_27305 -0.6 -2.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_02740 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_25390 -0.6 -2.0 MFS transporter compare
PS417_06745 -0.6 -1.3 polysaccharide deacetylase compare
PS417_09605 -0.6 -0.9 glycosyl transferase compare
PS417_17795 -0.6 -1.3 ABC transporter permease compare
PS417_00535 -0.6 -1.1 Holliday junction resolvase compare
PS417_27925 -0.6 -2.4 hypothetical protein compare
PS417_16855 -0.6 -1.5 cation:proton antiporter compare
PS417_07305 -0.6 -0.9 3-beta hydroxysteroid dehydrogenase compare
PS417_27290 -0.6 -0.6 hypothetical protein compare
PS417_02950 -0.6 -1.3 tRNA-dihydrouridine synthase B compare
PS417_25225 -0.6 -1.6 MFS transporter compare
PS417_22065 -0.6 -3.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_17070 -0.6 -1.2 RNA polymerase subunit sigma-24 compare
PS417_08590 -0.6 -1.2 hypothetical protein compare
PS417_09635 -0.6 -3.4 mannose-1-phosphate guanylyltransferase compare
PS417_10015 -0.6 -0.8 hypothetical protein compare
PS417_06925 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_18410 -0.6 -3.7 glutaminase compare
PS417_02720 -0.6 -0.7 TetR family transcriptional regulator compare
PS417_05345 -0.6 -1.4 exotoxin compare
PS417_17860 -0.6 -2.3 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_00975 -0.6 -0.8 hypothetical protein compare
PS417_23580 -0.6 -0.9 peptidylprolyl isomerase compare
PS417_12805 -0.6 -3.8 glycogen branching protein compare
PS417_05045 -0.6 -1.6 acetamidase compare
PS417_25695 -0.6 -2.3 peroxiredoxin compare
PS417_00190 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_02075 -0.6 -1.8 thioesterase compare
PS417_09640 -0.6 -3.1 capsular biosynthesis protein compare
PS417_02895 -0.6 -1.1 precorrin-6Y C5,15-methyltransferase compare
PS417_23460 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_27295 -0.6 -2.5 hypothetical protein compare
PS417_01710 -0.6 -2.9 histidine utilization repressor compare
PS417_05695 -0.6 -1.6 transcriptional regulator compare
PS417_09865 -0.6 -1.2 hypothetical protein compare
PS417_01425 -0.6 -1.8 AraC family transcriptional regulator compare
PS417_23250 -0.5 -2.1 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_16510 -0.5 -1.8 Clp protease ClpX compare
PS417_00925 -0.5 -0.9 hypothetical protein compare
PS417_09620 -0.5 -3.9 lipopolysaccharide biosynthesis protein compare
PS417_21695 -0.5 -1.2 succinylglutamate-semialdehyde dehydrogenase compare
PS417_06490 -0.5 -1.8 hypothetical protein compare
PS417_04650 -0.5 -0.3 D-alanine--D-alanine ligase compare
PS417_08580 -0.5 -1.9 histidine kinase compare
PS417_27585 -0.5 -1.0 diaminopimelate epimerase compare
PS417_15915 -0.5 -1.0 hypothetical protein compare
PS417_13990 -0.5 -1.5 LysR family transcriptional regulator compare
PS417_07710 -0.5 -1.4 membrane protein compare
PS417_17375 -0.5 -1.6 C4-dicarboxylate ABC transporter compare
PS417_01605 -0.5 -0.6 phosphoglycerate mutase compare
PS417_20125 -0.5 -2.3 phosphoribosylglycinamide formyltransferase compare
PS417_15120 -0.5 -2.6 chromosome segregation protein SMC compare
PS417_10720 -0.5 -2.1 chemotaxis protein CheY compare
PS417_11390 -0.5 -2.1 LysR family transcriptional regulator compare
PS417_14600 -0.5 -1.6 bleomycin resistance protein compare
PS417_19065 -0.5 -0.7 monooxygenase compare
PS417_07565 -0.5 -1.0 hypothetical protein compare
PS417_19145 -0.5 -3.6 membrane protein compare
PS417_27750 -0.5 -2.3 transcriptional regulator compare
PS417_02280 -0.5 -0.4 GlcNAc-PI de-N-acetylase compare
PS417_24885 -0.5 -1.7 transcriptional regulator compare
PS417_00810 -0.5 -1.2 RNA polymerase sigma factor compare
PS417_23825 -0.5 -2.0 penicillin-binding protein compare
PS417_22150 -0.5 -1.9 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_18910 -0.5 -1.5 acetylornithine deacetylase compare
PS417_17855 -0.5 -2.0 major facilitator transporter compare
PS417_07120 -0.5 -2.3 RNA polymerase sigma-H factor compare
PS417_15585 -0.5 -2.3 DNA repair nucleotidyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Scopoletin across organisms