Experiment set32S550 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 0.5 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.7 -5.6 pantoate--beta-alanine ligase compare
PS417_22450 -3.8 -2.6 ATP-dependent DNA helicase RuvA compare
PS417_27795 -3.2 -1.3 orotate phosphoribosyltransferase compare
PS417_22570 -2.7 -1.5 H-NS histone compare
PS417_08125 -2.1 -0.8 prephenate dehydratase compare
PS417_24935 -2.0 -1.7 hypothetical protein compare
PS417_28050 -1.8 -1.7 hypothetical protein compare
PS417_01605 -1.7 -1.6 phosphoglycerate mutase compare
PS417_04365 -1.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21430 -1.6 -1.9 3-oxoacyl-ACP synthase compare
PS417_06680 -1.6 -5.4 nuclease PIN compare
PS417_08540 -1.5 -2.7 RNA helicase compare
PS417_26850 -1.4 -1.2 twin-arginine translocation pathway signal protein compare
PS417_21480 -1.4 -1.7 23S rRNA pseudouridylate synthase compare
PS417_23380 -1.4 -2.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_24605 -1.3 -3.8 thiamine-phosphate pyrophosphorylase compare
PS417_10645 -1.3 -4.0 magnesium ABC transporter ATPase compare
PS417_26990 -1.3 -1.0 RNA pyrophosphohydrolase compare
PS417_23775 -1.2 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_11810 -1.2 -1.3 oxidoreductase compare
PS417_24600 -1.2 -5.7 hydrogenase compare
PS417_02485 -1.2 -2.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05160 -1.2 -1.6 DNA polymerase III subunit chi compare
PS417_26775 -1.2 -7.0 thiazole synthase compare
PS417_28070 -1.1 -5.3 phosphate ABC transporter ATP-binding protein compare
PS417_23810 -1.1 -5.9 acetolactate synthase 3 catalytic subunit compare
PS417_03560 -1.1 -1.4 GTP-binding protein compare
PS417_04385 -1.1 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_26730 -1.0 -0.8 pyrroline-5-carboxylate reductase compare
PS417_02555 -1.0 -6.9 exoribonuclease R compare
PS417_02880 -1.0 -1.4 copper chaperone compare
PS417_23385 -1.0 -4.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_22520 -1.0 -1.1 histidine kinase compare
PS417_22620 -1.0 -2.0 pyruvate kinase compare
PS417_16510 -1.0 -3.5 Clp protease ClpX compare
PS417_13305 -1.0 -1.6 hypothetical protein compare
PS417_26175 -0.9 -1.0 sarcosine oxidase subunit gamma compare
PS417_13510 -0.9 -1.1 polyketide cyclase compare
PS417_06530 -0.9 -2.4 membrane protein compare
PS417_04380 -0.9 -0.6 ABC transporter permease compare
PS417_06200 -0.9 -3.1 protein-PII uridylyltransferase compare
PS417_02270 -0.9 -2.3 carbamoyltransferase compare
PS417_01435 -0.8 -1.4 hypothetical protein compare
PS417_26695 -0.8 -1.0 uracil phosphoribosyltransferase compare
PS417_00385 -0.8 -1.1 Fur family transcriptional regulator compare
PS417_09150 -0.8 -2.1 energy transducer TonB compare
PS417_07455 -0.8 -0.8 glutamine amidotransferase compare
PS417_28080 -0.8 -5.6 phosphate ABC transporter permease compare
PS417_27290 -0.8 -1.8 hypothetical protein compare
PS417_24745 -0.8 -1.2 gamma-glutamyl phosphate reductase compare
PS417_08650 -0.7 -1.2 transcriptional regulator compare
PS417_14540 -0.7 -1.4 cytochrome C oxidase subunit III compare
PS417_07560 -0.7 -0.9 universal stress protein UspA compare
PS417_27195 -0.7 -0.8 N-acetylglutamate synthase compare
PS417_18425 -0.7 -1.2 sporulation protein compare
PS417_21655 -0.7 -1.0 aspartate kinase compare
PS417_09865 -0.7 -1.8 hypothetical protein compare
PS417_07305 -0.7 -2.2 3-beta hydroxysteroid dehydrogenase compare
PS417_01095 -0.7 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_04440 -0.7 -1.8 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_05165 -0.7 -1.8 cytosol aminopeptidase compare
PS417_20705 -0.7 -2.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_19835 -0.7 -1.1 flagellar biosynthesis protein FliS compare
PS417_05535 -0.7 -1.1 Fis family transcriptional regulator compare
PS417_23370 -0.7 -2.4 protoheme IX farnesyltransferase compare
PS417_25710 -0.7 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_07710 -0.7 -1.8 membrane protein compare
PS417_11720 -0.6 -2.7 class V aminotransferase compare
PS417_18395 -0.6 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_23900 -0.6 -3.2 poly(A) polymerase compare
PS417_28230 -0.6 -1.8 transcriptional regulator compare
PS417_22445 -0.6 -1.4 ATP-dependent DNA helicase RuvB compare
PS417_01560 -0.6 -1.4 imidazoleglycerol-phosphate dehydratase compare
PS417_23490 -0.6 -0.9 dihydrofolate reductase compare
PS417_06895 -0.6 -2.0 DNA-binding protein compare
PS417_21695 -0.6 -1.6 succinylglutamate-semialdehyde dehydrogenase compare
PS417_07695 -0.6 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_14980 -0.6 -1.0 universal stress protein UspA compare
PS417_02975 -0.6 -2.6 3-dehydroquinate dehydratase compare
PS417_04390 -0.6 -1.9 toluene tolerance protein compare
PS417_12870 -0.6 -0.9 enoyl-CoA hydratase compare
PS417_05815 -0.6 -2.4 recombinase RecA compare
PS417_13175 -0.6 -1.9 iron transporter compare
PS417_23805 -0.6 -2.1 acetolactate synthase 3 regulatory subunit compare
PS417_01965 -0.6 -1.4 fimbriae biosynthesis protein compare
PS417_23015 -0.6 -2.3 NGG1p interacting factor 3 protein, NIF3 compare
PS417_08580 -0.6 -2.5 histidine kinase compare
PS417_11725 -0.6 -1.8 peptidase M19 compare
PS417_17215 -0.6 -1.2 peptidylprolyl isomerase compare
PS417_02060 -0.6 -2.4 FAD-dependent oxidoreductase compare
PS417_04270 -0.6 -2.9 ribonuclease G compare
PS417_09575 -0.6 -1.4 glutathione S-transferase compare
PS417_27605 -0.6 -3.3 hypothetical protein compare
PS417_19850 -0.6 -4.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19955 -0.6 -0.9 hypothetical protein compare
PS417_20915 -0.6 -2.1 hypothetical protein compare
PS417_24710 -0.6 -3.4 lipoprotein compare
PS417_27140 -0.6 -2.5 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_09160 -0.6 -1.3 GNAT family acetyltransferase compare
PS417_08335 -0.6 -0.9 hypothetical protein compare
PS417_01425 -0.6 -1.7 AraC family transcriptional regulator compare
PS417_14065 -0.6 -3.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_04050 -0.6 -1.6 peptide ABC transporter ATP-binding protein compare
PS417_14325 -0.6 -2.4 AraC family transcriptional regulator compare
PS417_24895 -0.6 -1.0 hypothetical protein compare
PS417_00920 -0.6 -1.9 diguanylate cyclase compare
PS417_13620 -0.6 -1.2 thermostable hemolysin compare
PS417_14240 -0.6 -1.7 isochorismatase compare
PS417_01850 -0.5 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_10425 -0.5 -1.2 hypothetical protein compare
PS417_00650 -0.5 -0.6 LysR family transcriptional regulator compare
PS417_21270 -0.5 -1.4 translation initiation factor 2 compare
PS417_25155 -0.5 -1.2 hypothetical protein compare
PS417_02280 -0.5 -0.9 GlcNAc-PI de-N-acetylase compare
PS417_23910 -0.5 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_02255 -0.5 -1.8 lipopolysaccharide kinase compare
PS417_27705 -0.5 -1.0 amino acid dehydrogenase compare
PS417_16775 -0.5 -1.2 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_27425 -0.5 -3.2 exopolyphosphatase compare
PS417_03550 -0.5 -1.1 hypothetical protein compare
PS417_08170 -0.5 -3.3 capsular biosynthesis protein compare
PS417_28510 -0.5 -2.4 chromosome partitioning protein compare
PS417_01285 -0.5 -1.1 haloacid dehalogenase compare
PS417_09730 -0.5 -2.0 adenylylsulfate kinase compare
PS417_03000 -0.5 -1.8 translation initiation factor Sui1 compare
PS417_10245 -0.5 -1.1 hypothetical protein compare
PS417_22530 -0.5 -2.7 hypothetical protein compare
PS417_26805 -0.5 -0.7 cell division protein FtsE compare
PS417_01945 -0.5 -2.0 nuclease compare
PS417_18310 -0.5 -0.4 hypothetical protein compare
PS417_05710 -0.5 -1.4 hypothetical protein compare
PS417_27405 -0.5 -2.2 hypothetical protein compare
PS417_01760 -0.5 -1.5 imidazolonepropionase compare
PS417_28040 -0.5 -1.9 histidine kinase compare
PS417_26335 -0.5 -1.0 BetI family transcriptional regulator compare
PS417_01620 -0.5 -1.2 preprotein translocase subunit SecB compare
PS417_02765 -0.5 -1.1 phosphate starvation-inducible protein PsiF compare
PS417_23025 -0.5 -2.1 murein transglycosylase compare
PS417_19415 -0.5 -1.1 allantoinase compare
PS417_21870 -0.5 -1.1 glycerophosphodiester phosphodiesterase compare
PS417_04340 -0.5 -2.2 ribosome hibernation promoting factor HPF compare
PS417_28075 -0.5 -1.6 phosphate ABC transporter permease compare
PS417_27105 -0.5 -1.9 spermidine/putrescine ABC transporter permease compare
PS417_07575 -0.5 -1.6 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_25915 -0.5 -1.7 carbon-nitrogen hydrolase compare
PS417_19285 -0.5 -0.8 ankyrin compare
PS417_02745 -0.5 -1.1 FMN-dependent NADH-azoreductase compare
PS417_22085 -0.5 -1.5 aldehyde dehydrogenase compare
PS417_14660 -0.5 -2.2 methyltransferase compare
PS417_24615 -0.5 -0.8 hypothetical protein compare
PS417_15160 -0.5 -2.1 hypothetical protein compare
PS417_27690 -0.5 -1.8 XRE family transcriptional regulator compare
PS417_02720 -0.5 -0.6 TetR family transcriptional regulator compare
PS417_22205 -0.5 -2.8 potassium transporter TrkH compare
PS417_22705 -0.5 -1.5 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_22260 -0.5 -1.1 segregation and condensation protein B compare
PS417_19675 -0.5 -2.4 chemotaxis protein CheY compare
PS417_19335 -0.5 -1.5 isochorismatase compare
PS417_13710 -0.4 -1.3 hypothetical protein compare
PS417_03030 -0.4 -1.8 pyrophosphatase compare
PS417_13140 -0.4 -1.2 oxidoreductase compare
PS417_10265 -0.4 -1.2 peptidase compare
PS417_23170 -0.4 -1.0 FeS assembly protein IscX compare
PS417_11830 -0.4 -1.4 membrane protein compare
PS417_23205 -0.4 -0.8 transcriptional regulator compare
PS417_04055 -0.4 -1.7 peptide transporter compare
PS417_07155 -0.4 -2.0 peroxiredoxin compare
PS417_02415 -0.4 -2.0 phosphoserine phosphatase compare
PS417_12525 -0.4 -2.2 hypothetical protein compare
PS417_05850 -0.4 -1.7 LysR family transcriptional regulator compare
PS417_27225 -0.4 -2.1 protease compare
PS417_23615 -0.4 -1.4 sulfate transporter compare
PS417_12805 -0.4 -3.0 glycogen branching protein compare
PS417_23995 -0.4 -0.5 preprotein translocase subunit SecG compare
PS417_21070 -0.4 -1.2 aconitate hydratase compare
PS417_20535 -0.4 -2.4 peptidylprolyl isomerase compare
PS417_26240 -0.4 -1.2 N-methylproline demethylase compare
PS417_03260 -0.4 -0.5 5S ribosomal RNA compare
PS417_12175 -0.4 -1.5 peptide ABC transporter permease compare
PS417_07295 -0.4 -1.7 hypothetical protein compare
PS417_06205 -0.4 -2.3 methionine aminopeptidase compare
PS417_10010 -0.4 -1.2 Replication protein P compare
PS417_00045 -0.4 -0.8 glycerol acyltransferase compare
PS417_14760 -0.4 -2.6 membrane protein compare
PS417_00475 -0.4 -1.7 membrane protein compare
PS417_01955 -0.4 -3.2 peptidase compare
PS417_24675 -0.4 -1.0 lipoyl synthase compare
PS417_03785 -0.4 -1.1 pilus assembly protein PilV compare
PS417_09085 -0.4 -0.9 hypothetical protein compare
PS417_24500 -0.4 -1.1 DEAD/DEAH box helicase compare
PS417_23390 -0.4 -2.6 ubiquinol oxidase subunit II compare
PS417_16255 -0.4 -1.3 RNA polymerase sigma factor compare
PS417_12585 -0.4 -2.7 acriflavine resistance protein B compare
PS417_00080 -0.4 -2.3 potassium transporter peripheral membrane component compare
PS417_21090 -0.4 -1.0 hypothetical protein compare
PS417_05575 -0.4 -2.7 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_00845 -0.4 -0.8 transcriptional regulator compare
PS417_13715 -0.4 -2.6 hypothetical protein compare
PS417_08130 -0.4 -0.9 aspartate aminotransferase compare
PS417_28140 -0.4 -2.3 asparaginase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Scopoletin across organisms