Experiment set32S550 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 0.5 mM; liquid stress

200 most detrimental genes:

  gene name fitness t score description  
PS417_22210 +1.2 3.5 AraC family transcriptional regulator compare
PS417_03045 +1.0 3.3 hypothetical protein compare
PS417_08230 +1.0 2.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_17945 +0.9 1.5 hypothetical protein compare
PS417_16370 +0.9 6.9 chemotaxis protein CheY compare
PS417_28265 +0.9 2.5 pyridoxamine kinase compare
PS417_10720 +0.9 4.4 chemotaxis protein CheY compare
PS417_05975 +0.9 1.1 chemotaxis protein CheW compare
PS417_13185 +0.8 3.1 RND transporter compare
PS417_28145 +0.8 2.2 AraC family transcriptional regulator compare
PS417_06945 +0.7 1.5 membrane protein compare
PS417_23580 +0.7 1.9 peptidylprolyl isomerase compare
PS417_20635 +0.7 1.4 ABC transporter ATP-binding protein compare
PS417_11770 +0.7 2.0 pyruvate dehydrogenase compare
PS417_07245 +0.7 2.8 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_02045 +0.7 2.0 3-oxoacyl-ACP synthase compare
PS417_15215 +0.7 1.1 protein activator of alkane oxidation PraA compare
PS417_06710 +0.7 1.0 beta-ketoadipyl CoA thiolase compare
PS417_06845 +0.7 1.9 lipoprotein compare
PS417_07845 +0.7 1.3 transcriptional regulator compare
PS417_00755 +0.7 0.9 biofilm PGA synthesis protein PgaD compare
PS417_13010 +0.7 2.1 alpha/beta hydrolase compare
PS417_03385 +0.6 1.6 flavin reductase compare
PS417_25380 +0.6 1.6 hypothetical protein compare
PS417_15710 +0.6 1.1 nitrate reductase compare
PS417_12660 +0.6 2.0 hypothetical protein compare
PS417_02365 +0.6 1.2 hypothetical protein compare
PS417_13090 +0.6 2.2 dienelactone hydrolase compare
PS417_22630 +0.6 1.8 hypothetical protein compare
PS417_23455 +0.6 1.8 LrgA compare
PS417_21760 +0.6 1.1 hypothetical protein compare
PS417_20650 +0.6 4.4 hypothetical protein compare
PS417_27585 +0.6 1.3 diaminopimelate epimerase compare
PS417_04225 +0.6 2.4 conjugal transfer protein TraR compare
PS417_23950 +0.6 1.0 polynucleotide phosphorylase/polyadenylase compare
PS417_19825 +0.6 5.4 ATPase AAA compare
PS417_28170 +0.6 2.6 transcriptional regulator compare
PS417_26755 +0.6 2.3 nucleoside-triphosphate diphosphatase compare
PS417_21570 +0.6 3.6 flagellar basal body rod protein FlgB compare
PS417_08190 +0.5 4.5 membrane protein compare
PS417_03080 +0.5 1.3 hypothetical protein compare
PS417_08185 +0.5 2.7 glycosyl transferase compare
PS417_19030 +0.5 2.4 sodium:dicarboxylate symporter compare
PS417_11445 +0.5 3.1 enoyl-CoA hydratase compare
PS417_01145 +0.5 0.9 taurine transporter ATP-binding subunit compare
PS417_03655 +0.5 1.5 short-chain dehydrogenase compare
PS417_27635 +0.5 1.8 magnesium chelatase compare
PS417_19600 +0.5 1.2 exonuclease compare
PS417_28030 +0.5 2.6 hypothetical protein compare
PS417_21355 +0.5 1.3 hypothetical protein compare
PS417_13335 +0.5 1.2 aldo/keto reductase compare
PS417_26230 +0.5 1.7 electron transfer flavoprotein subunit alpha compare
PS417_27900 +0.5 1.2 ABC transporter ATP-binding protein compare
PS417_18755 +0.5 1.7 CrtK compare
PS417_08195 +0.5 3.4 hypothetical protein compare
PS417_19870 +0.5 3.2 flagellar rod assembly protein FlgJ compare
PS417_18105 +0.5 1.4 iron-dicitrate transporter substrate-binding subunit compare
PS417_01405 +0.5 1.5 sugar transporter compare
PS417_01380 +0.5 2.4 nucleotide cyclase compare
PS417_26305 +0.5 1.7 AraC family transcriptional regulator compare
PS417_19500 +0.5 1.5 antibiotic synthesis protein MbtH compare
PS417_26105 +0.5 1.8 ABC transporter permease compare
PS417_15290 +0.5 1.3 type VI secretion protein compare
PS417_24655 +0.5 2.1 hypothetical protein compare
PS417_22980 +0.5 2.1 GntR family transcriptional regulator compare
PS417_07870 +0.5 1.5 hypothetical protein compare
PS417_16055 +0.5 2.1 biopolymer transporter TolR compare
PS417_18130 +0.5 2.0 ABC transporter substrate-binding protein compare
PS417_01900 +0.5 2.6 poly(3-hydroxyalkanoate) depolymerase compare
PS417_00455 +0.5 1.3 hypothetical protein compare
PS417_21625 +0.5 0.8 DNA-binding protein compare
PS417_02440 +0.5 1.7 flagellar motor protein MotB compare
PS417_18165 +0.5 2.4 membrane protein compare
PS417_01750 +0.5 1.0 histidine ammonia-lyase compare
PS417_22375 +0.5 0.7 cold-shock protein compare
PS417_02035 +0.4 2.1 3-ketoacyl-ACP reductase compare
PS417_02675 +0.4 2.0 ABC transporter ATP-binding protein compare
PS417_13850 +0.4 2.0 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_23820 +0.4 2.0 hypothetical protein compare
PS417_16680 +0.4 1.7 MFS transporter compare
PS417_09460 +0.4 1.5 alkanesulfonate monooxygenase compare
PS417_23035 +0.4 1.5 D-trehalose PTS system, I, HPr, and IIA components (from data) compare
PS417_19885 +0.4 2.8 flagellar basal body rod protein FlgG compare
PS417_26555 +0.4 1.5 endoribonuclease L-PSP compare
PS417_27005 +0.4 0.8 membrane protein compare
PS417_13255 +0.4 0.8 ABC transporter compare
PS417_02370 +0.4 1.2 ADP-ribose pyrophosphatase compare
PS417_19560 +0.4 3.5 amino acid ABC transporter substrate-binding protein compare
PS417_14805 +0.4 0.6 AraC family transcriptional regulator compare
PS417_03015 +0.4 3.1 hypothetical protein compare
PS417_09235 +0.4 0.7 molecular chaperone compare
PS417_11950 +0.4 1.1 hypothetical protein compare
PS417_14985 +0.4 1.5 Fe-S protein compare
PS417_14165 +0.4 1.4 ArsR family transcriptional regulator compare
PS417_09605 +0.4 1.6 glycosyl transferase compare
PS417_26365 +0.4 1.5 EmrB/QacA subfamily drug resistance transporter compare
PS417_27870 +0.4 0.8 ATP-dependent DNA helicase RecG compare
PS417_10050 +0.4 1.7 hypothetical protein compare
PS417_04025 +0.4 2.8 glycine/betaine ABC transporter permease compare
PS417_04180 +0.4 1.4 GntR family transcriptional regulator compare
PS417_12740 +0.4 1.4 secretion protein HlyD compare
PS417_12460 +0.4 1.6 hypothetical protein compare
PS417_20610 +0.4 0.9 hypothetical protein compare
PS417_18990 +0.4 1.2 membrane protein compare
PS417_05610 +0.4 2.1 bacterioferritin compare
PS417_13505 +0.4 2.4 alpha/beta hydrolase compare
PS417_06970 +0.4 1.7 LysR family transcriptional regulator compare
PS417_27435 +0.4 3.0 polyphosphate kinase compare
PS417_07240 +0.4 1.5 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_14830 +0.4 1.9 Cro/Cl family transcriptional regulator compare
PS417_10515 +0.4 1.9 acetyl-CoA acetyltransferase compare
PS417_12565 +0.4 1.1 2-dehydro-3-deoxygluconokinase compare
PS417_20670 +0.4 2.2 glycosyl transferase family 2 compare
PS417_14915 +0.4 1.3 host specificity protein compare
PS417_21565 +0.4 1.8 flagellar basal body rod protein FlgC compare
PS417_19765 +0.4 3.2 flagellar hook-length control protein compare
PS417_13245 +0.4 1.4 saccharopine dehydrogenase compare
PS417_00390 +0.4 1.9 ABC transporter substrate-binding protein compare
PS417_04210 +0.4 1.5 Galactarate dehydratase (EC 4.2.1.42) (from data) compare
PS417_13895 +0.4 1.3 chemotaxis protein CheB compare
PS417_23715 +0.4 1.3 cupin compare
PS417_07700 +0.4 1.0 chromosome partitioning protein ParA compare
PS417_22330 +0.4 1.3 arginine deiminase compare
PS417_10535 +0.4 1.4 hypothetical protein compare
PS417_24885 +0.4 1.5 transcriptional regulator compare
PS417_00535 +0.4 1.7 Holliday junction resolvase compare
PS417_18765 +0.4 1.6 hypothetical protein compare
PS417_19695 +0.4 3.3 flagellar biosynthesis sigma factor compare
PS417_04650 +0.4 0.3 D-alanine--D-alanine ligase compare
PS417_12730 +0.4 1.3 glycosyltransferase compare
PS417_28375 +0.4 1.2 membrane protein compare
PS417_01915 +0.4 0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_28225 +0.4 0.8 hypothetical protein compare
PS417_16870 +0.4 1.7 short-chain dehydrogenase compare
PS417_08430 +0.4 2.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_05370 +0.4 1.8 PadR family transcriptional regulator compare
PS417_21555 +0.4 2.8 flagellar hook protein FlgE compare
PS417_15480 +0.4 1.0 ABC transporter substrate-binding protein compare
PS417_24135 +0.4 1.1 hypothetical protein compare
PS417_27945 +0.4 0.8 type VI secretion protein ImpA compare
PS417_02385 +0.4 0.8 esterase compare
PS417_02980 +0.4 0.7 chemotaxis protein compare
PS417_18810 +0.4 1.8 hypothetical protein compare
PS417_03810 +0.4 2.0 hypothetical protein compare
PS417_21900 +0.4 1.4 allophanate hydrolase compare
PS417_00075 +0.4 0.8 hypothetical protein compare
PS417_16160 +0.4 1.0 ABC transporter substrate-binding protein compare
PS417_14355 +0.4 1.6 sugar dehydrogenase compare
PS417_19830 +0.4 2.5 flagellar assembly protein FliT compare
PS417_11500 +0.4 2.0 hypothetical protein compare
PS417_02435 +0.4 2.0 flagellar motor protein MotA compare
PS417_12750 +0.4 2.2 acriflavine resistance protein B compare
PS417_24355 +0.4 1.3 MFS transporter compare
PS417_15035 +0.4 0.9 alkylhydroperoxidase compare
PS417_10100 +0.3 1.8 hypothetical protein compare
PS417_24905 +0.3 1.7 DNA-binding protein compare
PS417_20340 +0.3 0.7 hypothetical protein compare
PS417_17885 +0.3 1.3 moaF compare
PS417_16035 +0.3 1.5 ABC transporter substrate-binding protein compare
PS417_28410 +0.3 1.6 acyl-phosphate glycerol 3-phosphate acyltransferase compare
PS417_13195 +0.3 1.1 RND transporter MFP subunit compare
PS417_11880 +0.3 1.5 oxidoreductase compare
PS417_27865 +0.3 1.3 LysR family transcriptional regulator compare
PS417_13680 +0.3 2.0 3-oxoacyl-ACP synthase compare
PS417_26085 +0.3 1.6 peptidase compare
PS417_06365 +0.3 2.1 RNA polymerase sigma factor compare
PS417_12110 +0.3 0.9 ATP-binding protein compare
PS417_11510 +0.3 0.8 AraC family transcriptional regulator compare
PS417_03380 +0.3 0.6 hypothetical protein compare
PS417_24775 +0.3 1.2 dehydratase compare
PS417_02225 +0.3 1.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21990 +0.3 1.5 LacI family transcriptional regulator compare
PS417_16720 +0.3 0.7 membrane protein compare
PS417_23505 +0.3 0.6 cell division protein DedD compare
PS417_15455 +0.3 1.2 ABC transporter substrate-binding protein compare
PS417_24535 +0.3 1.3 membrane protein compare
PS417_27555 +0.3 1.1 DNA-binding protein compare
PS417_08200 +0.3 1.1 hypothetical protein compare
PS417_15555 +0.3 1.9 hypothetical protein compare
PS417_00620 +0.3 1.6 GntR family transcriptional regulator compare
PS417_00880 +0.3 2.3 hypothetical protein compare
PS417_19805 +0.3 1.1 flagellar M-ring protein FliF compare
PS417_16000 +0.3 1.0 chemotaxis protein CheY compare
PS417_20660 +0.3 2.5 hypothetical protein compare
PS417_10125 +0.3 1.6 hypothetical protein compare
PS417_16560 +0.3 1.2 GNAT family acetyltransferase compare
PS417_21475 +0.3 1.1 HAD family hydrolase compare
PS417_25360 +0.3 1.5 Isochorismatase compare
PS417_06885 +0.3 1.5 dihydrodipicolinate synthase compare
PS417_21360 +0.3 0.6 termination factor Rho compare
PS417_27100 +0.3 1.5 phosphohydrolase compare
PS417_19645 +0.3 0.8 chemotaxis protein compare
PS417_17805 +0.3 1.3 microcin B17 processing protein McbC compare
PS417_13095 +0.3 2.2 MFS transporter compare
PS417_20310 +0.3 1.2 hypothetical protein compare
PS417_05235 +0.3 0.7 peptidase inhibitor I42 compare
PS417_00565 +0.3 1.4 NAD(P) transhydrogenase compare
PS417_26770 +0.3 0.7 tRNA (guanine-N7)-methyltransferase compare
PS417_14710 +0.3 0.8 isochorismatase compare
PS417_27665 +0.3 1.5 diguanylate cyclase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress Scopoletin across organisms