Experiment set32S549 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_02280 -3.7 -2.5 GlcNAc-PI de-N-acetylase compare
PS417_27135 -3.4 -1.4 glutamine synthetase compare
PS417_16555 -2.9 -2.0 cupin compare
PS417_22450 -2.8 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_04595 -2.5 -2.5 cell division protein MraZ compare
PS417_03260 -2.4 -1.3 5S ribosomal RNA compare
PS417_00920 -2.4 -8.7 diguanylate cyclase compare
PS417_28050 -2.4 -2.1 hypothetical protein compare
PS417_23545 -2.2 -1.9 gamma-glutamyl kinase compare
PS417_27300 -2.2 -1.3 cell division protein ZapA compare
PS417_23950 -2.1 -1.9 polynucleotide phosphorylase/polyadenylase compare
PS417_26770 -1.9 -2.6 tRNA (guanine-N7)-methyltransferase compare
PS417_06245 -1.8 -1.6 zinc metallopeptidase RseP compare
PS417_05975 -1.8 -1.0 chemotaxis protein CheW compare
PS417_18545 -1.7 -2.2 cell division protein compare
PS417_04590 -1.7 -4.7 methyltransferase compare
PS417_23915 -1.7 -3.7 pantoate--beta-alanine ligase compare
PS417_10645 -1.7 -5.0 magnesium ABC transporter ATPase compare
PS417_18310 -1.7 -1.1 hypothetical protein compare
PS417_18355 -1.6 -6.6 DNA-binding protein compare
PS417_26730 -1.6 -0.9 pyrroline-5-carboxylate reductase compare
PS417_23025 -1.6 -4.2 murein transglycosylase compare
PS417_02975 -1.6 -2.8 3-dehydroquinate dehydratase compare
PS417_01185 -1.6 -5.8 ribosomal protein S6 modification protein compare
PS417_05535 -1.6 -2.2 Fis family transcriptional regulator compare
PS417_20855 -1.5 -1.0 hypothetical protein compare
PS417_17215 -1.5 -2.4 peptidylprolyl isomerase compare
PS417_20785 -1.5 -2.3 transcriptional regulator compare
PS417_25390 -1.5 -3.5 MFS transporter compare
PS417_23820 -1.5 -3.8 hypothetical protein compare
PS417_04380 -1.5 -1.0 ABC transporter permease compare
PS417_19350 -1.5 -3.8 GTP cyclohydrolase compare
PS417_06375 -1.5 -0.6 deoxycytidine triphosphate deaminase compare
PS417_24935 -1.4 -1.3 hypothetical protein compare
PS417_26985 -1.4 -5.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27865 -1.4 -2.3 LysR family transcriptional regulator compare
PS417_13510 -1.3 -1.2 polyketide cyclase compare
PS417_24710 -1.2 -7.2 lipoprotein compare
PS417_24705 -1.2 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_27040 -1.2 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_09915 -1.2 -1.8 hypothetical protein compare
PS417_06680 -1.2 -3.5 nuclease PIN compare
PS417_00705 -1.2 -1.5 MarR family transcriptional regulator compare
PS417_26800 -1.2 -4.9 cell division protein FtsX compare
PS417_25720 -1.2 -3.8 anthranilate synthase component II compare
PS417_16490 -1.1 -1.0 cell division protein FtsK compare
PS417_24115 -1.1 -1.6 hypothetical protein compare
PS417_27835 -1.1 -6.2 endoribonuclease compare
PS417_04365 -1.1 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01600 -1.1 -3.5 peptidase M23 compare
PS417_08155 -1.1 -1.1 integration host factor subunit beta compare
PS417_00450 -1.1 -3.8 chemotaxis protein CheY compare
PS417_15105 -1.1 -2.9 membrane protein compare
PS417_08185 -1.1 -2.2 glycosyl transferase compare
PS417_22400 -1.1 -5.7 7-cyano-7-deazaguanine synthase compare
PS417_16370 -1.1 -5.6 chemotaxis protein CheY compare
PS417_10720 -1.1 -4.4 chemotaxis protein CheY compare
PS417_18780 -1.0 -1.3 flavin reductase compare
PS417_21425 -1.0 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_10985 -1.0 -1.1 NADH:flavin oxidoreductase compare
PS417_09830 -1.0 -4.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_27605 -1.0 -4.4 hypothetical protein compare
PS417_15095 -1.0 -1.9 hypothetical protein compare
PS417_10040 -1.0 -1.1 MFS transporter compare
PS417_08170 -1.0 -5.4 capsular biosynthesis protein compare
PS417_09235 -1.0 -1.0 molecular chaperone compare
PS417_13620 -1.0 -1.2 thermostable hemolysin compare
PS417_13525 -1.0 -2.3 membrane protein compare
PS417_28510 -1.0 -3.5 chromosome partitioning protein compare
PS417_26805 -1.0 -1.0 cell division protein FtsE compare
PS417_24745 -0.9 -1.7 gamma-glutamyl phosphate reductase compare
PS417_07615 -0.9 -3.7 TetR family transcriptional regulator compare
PS417_11720 -0.9 -2.2 class V aminotransferase compare
PS417_22935 -0.9 -2.3 hypothetical protein compare
PS417_16750 -0.9 -2.0 ABC transporter ATP-binding protein compare
PS417_10015 -0.9 -1.1 hypothetical protein compare
PS417_05985 -0.9 -2.3 chemotaxis protein CheY compare
PS417_03815 -0.9 -2.2 DNA transporter compare
PS417_21105 -0.9 -5.4 aminodeoxychorismate synthase compare
PS417_21870 -0.9 -2.4 glycerophosphodiester phosphodiesterase compare
PS417_07695 -0.9 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_08230 -0.9 -0.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_22375 -0.9 -0.9 cold-shock protein compare
PS417_07120 -0.9 -1.9 RNA polymerase sigma-H factor compare
PS417_24600 -0.9 -4.4 hydrogenase compare
PS417_04475 -0.9 -2.7 hypothetical protein compare
PS417_01965 -0.9 -1.3 fimbriae biosynthesis protein compare
PS417_26850 -0.9 -0.8 twin-arginine translocation pathway signal protein compare
PS417_02475 -0.9 -1.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_06365 -0.9 -5.4 RNA polymerase sigma factor compare
PS417_03560 -0.9 -1.0 GTP-binding protein compare
PS417_08200 -0.9 -1.8 hypothetical protein compare
PS417_13655 -0.9 -2.2 xylulose kinase compare
PS417_18395 -0.9 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_07470 -0.9 -1.3 hypothetical protein compare
PS417_24780 -0.9 -5.9 peptidase C13 compare
PS417_24605 -0.9 -2.0 thiamine-phosphate pyrophosphorylase compare
PS417_09625 -0.9 -1.7 sugar ABC transporter substrate-binding protein compare
PS417_26775 -0.8 -5.2 thiazole synthase compare
PS417_20880 -0.8 -1.8 GntR family transcriptional regulator compare
PS417_17980 -0.8 -1.4 ABC transporter permease compare
PS417_06205 -0.8 -4.5 methionine aminopeptidase compare
PS417_05695 -0.8 -2.4 transcriptional regulator compare
PS417_22575 -0.8 -3.8 exonuclease I compare
PS417_12160 -0.8 -2.2 Fis family transcriptional regulator compare
PS417_01435 -0.8 -1.2 hypothetical protein compare
PS417_23170 -0.8 -1.6 FeS assembly protein IscX compare
PS417_00045 -0.8 -1.2 glycerol acyltransferase compare
PS417_00925 -0.8 -1.9 hypothetical protein compare
PS417_17240 -0.8 -1.8 trigger factor compare
PS417_23135 -0.8 -1.4 GTP-binding protein compare
PS417_02555 -0.8 -4.8 exoribonuclease R compare
PS417_08860 -0.8 -2.2 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_16160 -0.8 -2.1 ABC transporter substrate-binding protein compare
PS417_20030 -0.8 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_09600 -0.8 -3.3 glycosyl transferase family 1 compare
PS417_13490 -0.8 -1.5 hypothetical protein compare
PS417_27640 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_05165 -0.8 -1.6 cytosol aminopeptidase compare
PS417_22530 -0.8 -3.1 hypothetical protein compare
PS417_27360 -0.8 -3.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_08410 -0.8 -1.3 hypothetical protein compare
PS417_06895 -0.8 -2.3 DNA-binding protein compare
PS417_24560 -0.8 -1.6 ferrous iron transporter compare
PS417_13425 -0.8 -1.9 cupin compare
PS417_06140 -0.8 -2.7 cold-shock protein compare
PS417_01285 -0.8 -1.5 haloacid dehalogenase compare
PS417_02485 -0.8 -1.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27245 -0.8 -1.1 aminotransferase DegT compare
PS417_08945 -0.8 -4.1 heat shock protein 90 compare
PS417_06125 -0.7 -1.0 hypothetical protein compare
PS417_03705 -0.7 -2.7 2-alkenal reductase compare
PS417_23250 -0.7 -3.1 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_15480 -0.7 -1.4 ABC transporter substrate-binding protein compare
PS417_19995 -0.7 -4.2 Long-chain fatty acid transport protein compare
PS417_26240 -0.7 -1.5 N-methylproline demethylase compare
PS417_04585 -0.7 -0.9 hypothetical protein compare
PS417_02950 -0.7 -1.9 tRNA-dihydrouridine synthase B compare
PS417_21625 -0.7 -0.8 DNA-binding protein compare
PS417_00065 -0.7 -1.1 3-methyladenine DNA glycosylase compare
PS417_12455 -0.7 -1.4 hydrolase compare
PS417_13205 -0.7 -1.1 isochorismate-pyruvate lyase compare
PS417_24385 -0.7 -2.2 tRNA (uracil-5-)-methyltransferase compare
PS417_17645 -0.7 -1.2 RND transporter compare
PS417_01850 -0.7 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_13900 -0.7 -3.7 chemotaxis protein CheR compare
PS417_27750 -0.7 -2.6 transcriptional regulator compare
PS417_14655 -0.7 -0.9 lysine transporter LysE compare
PS417_13185 -0.7 -1.3 RND transporter compare
PS417_10480 -0.7 -1.4 glutathione S-transferase compare
PS417_26525 -0.6 -4.0 DEAD/DEAH box helicase compare
PS417_24430 -0.6 -1.1 3-dehydroquinate dehydratase compare
PS417_03830 -0.6 -3.4 protein disaggregation chaperone compare
PS417_25700 -0.6 -1.5 cyclic AMP receptor protein compare
PS417_21515 -0.6 -3.6 transcriptional regulator compare
PS417_10095 -0.6 -1.3 hypothetical protein compare
PS417_09585 -0.6 -2.8 acetyltransferase compare
PS417_20705 -0.6 -1.4 cbb3-type cytochrome c oxidase subunit II compare
PS417_22160 -0.6 -3.1 3-beta hydroxysteroid dehydrogenase compare
PS417_15090 -0.6 -1.5 hypothetical protein compare
PS417_23095 -0.6 -0.8 exodeoxyribonuclease compare
PS417_12005 -0.6 -1.5 hypothetical protein compare
PS417_02210 -0.6 -3.1 diguanylate cyclase compare
PS417_18425 -0.6 -0.9 sporulation protein compare
PS417_18235 -0.6 -2.1 nitrile hydratase compare
PS417_05650 -0.6 -2.1 leucyl-tRNA synthetase compare
PS417_09615 -0.6 -1.9 glycosyl transferase family 1 compare
PS417_13895 -0.6 -1.9 chemotaxis protein CheB compare
PS417_05095 -0.6 -1.9 membrane protein compare
PS417_26275 -0.6 -1.2 glycine/betaine ABC transporter substrate-binding protein compare
PS417_18530 -0.6 -2.8 O-succinylhomoserine sulfhydrylase compare
PS417_24625 -0.6 -2.7 (dimethylallyl)adenosine tRNA methylthiotransferase compare
PS417_27705 -0.6 -1.0 amino acid dehydrogenase compare
PS417_18370 -0.6 -1.2 hypothetical protein compare
PS417_25780 -0.6 -1.3 molecular chaperone DnaJ compare
PS417_27195 -0.6 -0.8 N-acetylglutamate synthase compare
PS417_22405 -0.6 -3.6 7-carboxy-7-deazaguanine synthase compare
PS417_04410 -0.6 -1.3 hypothetical protein compare
PS417_23460 -0.6 -2.2 LysR family transcriptional regulator compare
PS417_04530 -0.6 -1.2 glycerate dehydrogenase compare
PS417_01590 -0.6 -1.1 polysaccharide deacetylase compare
PS417_01095 -0.6 -0.5 amino acid ABC transporter ATP-binding protein compare
PS417_23360 -0.6 -0.7 hypothetical protein compare
PS417_12805 -0.6 -4.4 glycogen branching protein compare
PS417_09595 -0.6 -2.3 membrane protein compare
PS417_21915 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_15085 -0.6 -1.5 ATPase AAA compare
PS417_19605 -0.6 -0.9 hypothetical protein compare
PS417_00825 -0.6 -1.0 recombinase RecF compare
PS417_18205 -0.6 -1.2 aldehyde dehydrogenase compare
PS417_24895 -0.6 -1.0 hypothetical protein compare
PS417_06100 -0.6 -1.1 SAM-dependent methyltransferase compare
PS417_22195 -0.6 -2.7 peptidase compare
PS417_15235 -0.6 -1.9 short-chain dehydrogenase compare
PS417_02095 -0.6 -2.3 AMP-binding protein compare
PS417_01035 -0.5 -2.4 ATP-binding protein compare
PS417_08940 -0.5 -1.8 thioesterase compare
PS417_10455 -0.5 -2.0 membrane protein compare
PS417_17375 -0.5 -1.5 C4-dicarboxylate ABC transporter compare
PS417_03300 -0.5 -1.1 alanine acetyltransferase compare


Specific Phenotypes

For 8 genes in this experiment

For liquid stress 80% Methanol in Pseudomonas simiae WCS417

For liquid stress 80% Methanol across organisms