Experiment set32S548 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 2 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_21425 -4.6 -2.5 4-amino-4-deoxychorismate lyase compare
PS417_23915 -2.8 -3.4 pantoate--beta-alanine ligase compare
PS417_22570 -2.3 -1.3 H-NS histone compare
PS417_27300 -2.3 -1.3 cell division protein ZapA compare
PS417_01855 -2.3 -4.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_04365 -2.3 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19350 -2.2 -3.8 GTP cyclohydrolase compare
PS417_00920 -2.1 -4.1 diguanylate cyclase compare
PS417_28050 -2.1 -1.6 hypothetical protein compare
PS417_18310 -2.0 -1.4 hypothetical protein compare
PS417_26990 -1.9 -1.1 RNA pyrophosphohydrolase compare
PS417_03560 -1.8 -1.7 GTP-binding protein compare
PS417_22450 -1.8 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_04380 -1.8 -1.2 ABC transporter permease compare
PS417_26730 -1.8 -1.0 pyrroline-5-carboxylate reductase compare
PS417_24710 -1.7 -9.1 lipoprotein compare
PS417_03260 -1.7 -1.4 5S ribosomal RNA compare
PS417_10645 -1.7 -4.6 magnesium ABC transporter ATPase compare
PS417_27870 -1.6 -2.4 ATP-dependent DNA helicase RecG compare
PS417_06375 -1.6 -0.6 deoxycytidine triphosphate deaminase compare
PS417_08125 -1.6 -0.6 prephenate dehydratase compare
PS417_27040 -1.6 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_20725 -1.6 -2.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_25720 -1.6 -7.6 anthranilate synthase component II compare
PS417_24935 -1.5 -1.4 hypothetical protein compare
PS417_03455 -1.5 -1.7 type III secretion protein compare
PS417_18545 -1.5 -2.2 cell division protein compare
PS417_21105 -1.5 -5.9 aminodeoxychorismate synthase compare
PS417_10985 -1.4 -1.4 NADH:flavin oxidoreductase compare
PS417_27835 -1.4 -5.3 endoribonuclease compare
PS417_26775 -1.4 -7.0 thiazole synthase compare
PS417_24600 -1.4 -4.3 hydrogenase compare
PS417_22690 -1.4 -3.2 phosphogluconate dehydratase compare
PS417_26900 -1.3 -1.9 L-cystine transporter tcyP compare
PS417_16555 -1.3 -1.5 cupin compare
PS417_24370 -1.3 -1.0 (2Fe-2S)-binding protein compare
PS417_19995 -1.3 -7.0 Long-chain fatty acid transport protein compare
PS417_08170 -1.2 -5.9 capsular biosynthesis protein compare
PS417_08155 -1.2 -1.4 integration host factor subunit beta compare
PS417_11400 -1.2 -2.0 phosphoglycerate mutase compare
PS417_19520 -1.2 -2.4 transcriptional regulator compare
PS417_23545 -1.2 -1.7 gamma-glutamyl kinase compare
PS417_02280 -1.2 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_18235 -1.2 -2.0 nitrile hydratase compare
PS417_08130 -1.1 -1.9 aspartate aminotransferase compare
PS417_05985 -1.1 -1.5 chemotaxis protein CheY compare
PS417_05975 -1.1 -0.8 chemotaxis protein CheW compare
PS417_07615 -1.1 -4.1 TetR family transcriptional regulator compare
PS417_16715 -1.1 -1.9 DoxX family protein compare
PS417_17215 -1.1 -2.1 peptidylprolyl isomerase compare
PS417_14075 -1.0 -2.0 hypothetical protein compare
PS417_08245 -1.0 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_02475 -1.0 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_26985 -1.0 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21430 -1.0 -1.2 3-oxoacyl-ACP synthase compare
PS417_02880 -1.0 -1.4 copper chaperone compare
PS417_06680 -1.0 -3.2 nuclease PIN compare
PS417_02975 -1.0 -2.0 3-dehydroquinate dehydratase compare
PS417_27795 -1.0 -0.5 orotate phosphoribosyltransferase compare
PS417_20855 -1.0 -1.3 hypothetical protein compare
PS417_22530 -0.9 -4.0 hypothetical protein compare
PS417_16490 -0.9 -0.6 cell division protein FtsK compare
PS417_27195 -0.9 -1.2 N-acetylglutamate synthase compare
PS417_24705 -0.9 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_28325 -0.9 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_08410 -0.9 -1.1 hypothetical protein compare
PS417_05595 -0.9 -5.1 ornithine carbamoyltransferase compare
PS417_11925 -0.9 -2.2 hypothetical protein compare
PS417_22610 -0.9 -2.1 pilus assembly protein PilZ compare
PS417_27245 -0.9 -1.4 aminotransferase DegT compare
PS417_21015 -0.9 -1.1 EstX protein compare
PS417_02950 -0.9 -1.9 tRNA-dihydrouridine synthase B compare
PS417_12005 -0.9 -3.0 hypothetical protein compare
PS417_15135 -0.9 -1.0 hypothetical protein compare
PS417_08580 -0.9 -2.5 histidine kinase compare
PS417_02485 -0.9 -1.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02555 -0.9 -5.4 exoribonuclease R compare
PS417_27605 -0.8 -4.5 hypothetical protein compare
PS417_25985 -0.8 -1.7 dethiobiotin synthetase compare
PS417_00345 -0.8 -1.5 copper-binding protein compare
PS417_00485 -0.8 -2.4 ABC transporter permease compare
PS417_01645 -0.8 -1.5 cupin compare
PS417_23820 -0.8 -3.0 hypothetical protein compare
PS417_01920 -0.8 -0.8 ATP-dependent protease subunit HslV compare
PS417_24895 -0.8 -1.3 hypothetical protein compare
PS417_14045 -0.8 -2.8 alkyl hydroperoxide reductase compare
PS417_10720 -0.8 -2.9 chemotaxis protein CheY compare
PS417_23805 -0.8 -2.6 acetolactate synthase 3 regulatory subunit compare
PS417_02160 -0.8 -1.0 hypothetical protein compare
PS417_23810 -0.8 -4.6 acetolactate synthase 3 catalytic subunit compare
PS417_28510 -0.8 -3.2 chromosome partitioning protein compare
PS417_23045 -0.8 -2.3 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_23995 -0.8 -0.7 preprotein translocase subunit SecG compare
PS417_24675 -0.8 -1.6 lipoyl synthase compare
PS417_20880 -0.8 -1.3 GntR family transcriptional regulator compare
PS417_05820 -0.8 -1.5 recombinase RecX compare
PS417_06780 -0.8 -1.5 TetR family transcriptional regulator compare
PS417_19275 -0.8 -1.1 hypothetical protein compare
PS417_04440 -0.8 -1.6 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_05695 -0.8 -2.1 transcriptional regulator compare
PS417_02720 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_23910 -0.7 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_19145 -0.7 -5.3 membrane protein compare
PS417_15030 -0.7 -1.1 short-chain dehydrogenase compare
PS417_15035 -0.7 -1.3 alkylhydroperoxidase compare
PS417_08185 -0.7 -2.2 glycosyl transferase compare
PS417_24745 -0.7 -1.4 gamma-glutamyl phosphate reductase compare
PS417_20715 -0.7 -1.0 cytochrome Cbb3 compare
PS417_09630 -0.7 -3.1 glycosyl transferase compare
PS417_03335 -0.7 -2.5 MFS transporter compare
PS417_07120 -0.7 -2.0 RNA polymerase sigma-H factor compare
PS417_12935 -0.7 -1.6 RNA polymerase sigma factor compare
PS417_08220 -0.7 -0.7 epimerase compare
PS417_01565 -0.7 -2.9 imidazole glycerol phosphate synthase compare
PS417_16515 -0.7 -2.3 Clp protease ClpS compare
PS417_27075 -0.7 -1.7 thiol-disulfide isomerase compare
PS417_06730 -0.7 -1.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_02255 -0.7 -1.8 lipopolysaccharide kinase compare
PS417_04420 -0.7 -3.5 histidinol dehydrogenase compare
PS417_16665 -0.7 -1.4 hypothetical protein compare
PS417_23825 -0.7 -2.8 penicillin-binding protein compare
PS417_06365 -0.7 -3.6 RNA polymerase sigma factor compare
PS417_06945 -0.7 -0.8 membrane protein compare
PS417_15775 -0.7 -2.2 short-chain dehydrogenase compare
PS417_17980 -0.7 -1.8 ABC transporter permease compare
PS417_09830 -0.7 -2.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_16510 -0.6 -2.5 Clp protease ClpX compare
PS417_24115 -0.6 -1.2 hypothetical protein compare
PS417_13425 -0.6 -0.7 cupin compare
PS417_24605 -0.6 -1.7 thiamine-phosphate pyrophosphorylase compare
PS417_09865 -0.6 -1.2 hypothetical protein compare
PS417_28140 -0.6 -1.6 asparaginase compare
PS417_22535 -0.6 -2.6 ornithine acetyltransferase compare
PS417_16400 -0.6 -1.1 NAD(P)H-quinone oxidoreductase compare
PS417_21625 -0.6 -0.7 DNA-binding protein compare
PS417_10240 -0.6 -2.1 hypothetical protein compare
PS417_27515 -0.6 -1.8 heme biosynthesis protein HemY compare
PS417_04475 -0.6 -2.1 hypothetical protein compare
PS417_27425 -0.6 -2.7 exopolyphosphatase compare
PS417_25320 -0.6 -4.1 dTDP-4-dehydrorhamnose reductase compare
PS417_03300 -0.6 -1.7 alanine acetyltransferase compare
PS417_04595 -0.6 -1.2 cell division protein MraZ compare
PS417_13145 -0.6 -1.2 50S ribosomal protein L21 compare
PS417_09600 -0.6 -2.5 glycosyl transferase family 1 compare
PS417_20700 -0.6 -3.3 cbb3-type cytochrome c oxidase subunit I compare
PS417_05815 -0.6 -2.0 recombinase RecA compare
PS417_11615 -0.6 -1.1 urea ABC transporter ATP-binding protein compare
PS417_07455 -0.6 -1.2 glutamine amidotransferase compare
PS417_06530 -0.6 -1.1 membrane protein compare
PS417_28355 -0.6 -2.6 cardiolipin synthetase compare
PS417_18040 -0.6 -1.1 general secretion pathway protein GspN compare
PS417_07170 -0.6 -1.5 hypothetical protein compare
PS417_21125 -0.6 -2.1 phosphoadenosine phosphosulfate reductase compare
PS417_16080 -0.6 -1.5 AraC family transcriptional regulator compare
PS417_22375 -0.6 -0.6 cold-shock protein compare
PS417_17440 -0.6 -1.1 beta-lactamase compare
PS417_05535 -0.6 -1.1 Fis family transcriptional regulator compare
PS417_27305 -0.6 -2.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_19160 -0.6 -2.7 hypothetical protein compare
PS417_15805 -0.6 -1.1 transporter compare
PS417_08205 -0.6 -2.0 acetyltransferase compare
PS417_19970 -0.6 -2.9 recombinase RmuC compare
PS417_10575 -0.6 -1.8 DNA alkylation repair protein compare
PS417_21600 -0.6 -3.0 pilus assembly protein PilZ compare
PS417_01600 -0.6 -1.8 peptidase M23 compare
PS417_02270 -0.6 -1.7 carbamoyltransferase compare
PS417_08320 -0.6 -1.2 metal-chelation protein CHAD compare
PS417_00080 -0.6 -2.9 potassium transporter peripheral membrane component compare
PS417_18105 -0.6 -1.0 iron-dicitrate transporter substrate-binding subunit compare
PS417_06205 -0.6 -3.2 methionine aminopeptidase compare
PS417_01090 -0.6 -2.5 hypothetical protein compare
PS417_02800 -0.6 -1.2 acetyltransferase compare
PS417_19155 -0.6 -1.9 DSBA oxidoreductase compare
PS417_26875 -0.5 -3.3 histidine kinase compare
PS417_01285 -0.5 -0.8 haloacid dehalogenase compare
PS417_15770 -0.5 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_01290 -0.5 -0.8 ADP-ribose diphosphatase compare
PS417_10445 -0.5 -1.4 LysR family transcriptional regulator compare
PS417_11345 -0.5 -2.2 membrane protein compare
PS417_06700 -0.5 -2.0 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) compare
PS417_11820 -0.5 -1.5 histidine kinase compare
PS417_22705 -0.5 -1.7 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_15105 -0.5 -2.1 membrane protein compare
PS417_12805 -0.5 -3.5 glycogen branching protein compare
PS417_13235 -0.5 -2.0 siderophore biosynthesis protein compare
PS417_05365 -0.5 -0.9 FAD-binding protein compare
PS417_09640 -0.5 -2.9 capsular biosynthesis protein compare
PS417_19010 -0.5 -2.9 LysR family transcriptional regulator compare
PS417_21855 -0.5 -1.2 hypothetical protein compare
PS417_25315 -0.5 -1.6 membrane protein compare
PS417_09635 -0.5 -2.2 mannose-1-phosphate guanylyltransferase compare
PS417_10920 -0.5 -1.5 LysR family transcriptional regulator compare
PS417_21760 -0.5 -1.0 hypothetical protein compare
PS417_10265 -0.5 -1.7 peptidase compare
PS417_09335 -0.5 -1.2 HAD family hydrolase compare
PS417_20665 -0.5 -2.7 hypothetical protein compare
PS417_19425 -0.5 -0.7 allantoicase compare
PS417_17330 -0.5 -2.4 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_18850 -0.5 -2.2 hypothetical protein compare
PS417_14400 -0.5 -1.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For liquid stress 80% Methanol in Pseudomonas simiae WCS417

For liquid stress 80% Methanol across organisms