Experiment set32S547 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 1 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -5.1 -5.0 pantoate--beta-alanine ligase compare
PS417_26730 -2.2 -1.2 pyrroline-5-carboxylate reductase compare
PS417_06680 -2.2 -6.0 nuclease PIN compare
PS417_06375 -2.1 -0.8 deoxycytidine triphosphate deaminase compare
PS417_28050 -2.0 -2.3 hypothetical protein compare
PS417_22450 -1.7 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_04365 -1.7 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19955 -1.6 -1.5 hypothetical protein compare
PS417_24600 -1.5 -5.7 hydrogenase compare
PS417_02255 -1.5 -3.4 lipopolysaccharide kinase compare
PS417_04585 -1.5 -2.2 hypothetical protein compare
PS417_04380 -1.5 -1.2 ABC transporter permease compare
PS417_22445 -1.5 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_26850 -1.5 -1.3 twin-arginine translocation pathway signal protein compare
PS417_00755 -1.5 -1.2 biofilm PGA synthesis protein PgaD compare
PS417_26775 -1.4 -5.4 thiazole synthase compare
PS417_16490 -1.4 -1.3 cell division protein FtsK compare
PS417_23950 -1.4 -1.8 polynucleotide phosphorylase/polyadenylase compare
PS417_13510 -1.3 -1.5 polyketide cyclase compare
PS417_02280 -1.3 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_02555 -1.2 -7.9 exoribonuclease R compare
PS417_01920 -1.2 -1.2 ATP-dependent protease subunit HslV compare
PS417_03260 -1.2 -1.3 5S ribosomal RNA compare
PS417_26695 -1.2 -1.9 uracil phosphoribosyltransferase compare
PS417_03560 -1.2 -1.6 GTP-binding protein compare
PS417_26420 -1.2 -2.3 hypothetical protein compare
PS417_06600 -1.1 -1.2 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_10645 -1.1 -3.4 magnesium ABC transporter ATPase compare
PS417_05695 -1.1 -4.1 transcriptional regulator compare
PS417_24710 -1.1 -7.7 lipoprotein compare
PS417_27300 -1.1 -1.0 cell division protein ZapA compare
PS417_26605 -1.1 -1.4 malonate decarboxylase subunit beta compare
PS417_08220 -1.0 -1.2 epimerase compare
PS417_00510 -1.0 -1.5 membrane protein compare
PS417_02880 -1.0 -1.5 copper chaperone compare
PS417_22620 -1.0 -3.4 pyruvate kinase compare
PS417_23805 -1.0 -3.7 acetolactate synthase 3 regulatory subunit compare
PS417_23385 -1.0 -4.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_23545 -1.0 -1.9 gamma-glutamyl kinase compare
PS417_16885 -1.0 -3.3 hypothetical protein compare
PS417_19350 -0.9 -2.6 GTP cyclohydrolase compare
PS417_02270 -0.9 -2.7 carbamoyltransferase compare
PS417_27135 -0.9 -0.7 glutamine synthetase compare
PS417_27195 -0.9 -0.9 N-acetylglutamate synthase compare
PS417_25720 -0.9 -6.2 anthranilate synthase component II compare
PS417_08540 -0.9 -2.0 RNA helicase compare
PS417_11810 -0.9 -1.2 oxidoreductase compare
PS417_02990 -0.9 -2.6 hypothetical protein compare
PS417_08580 -0.9 -4.0 histidine kinase compare
PS417_24500 -0.9 -2.3 DEAD/DEAH box helicase compare
PS417_23380 -0.9 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_21425 -0.9 -1.9 4-amino-4-deoxychorismate lyase compare
PS417_01710 -0.9 -4.4 histidine utilization repressor compare
PS417_28070 -0.9 -5.3 phosphate ABC transporter ATP-binding protein compare
PS417_23810 -0.8 -5.1 acetolactate synthase 3 catalytic subunit compare
PS417_05445 -0.8 -1.5 DNA mismatch repair protein MutT compare
PS417_04385 -0.8 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_22570 -0.8 -0.8 H-NS histone compare
PS417_21625 -0.8 -1.0 DNA-binding protein compare
PS417_01855 -0.8 -2.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_01605 -0.8 -0.8 phosphoglycerate mutase compare
PS417_02975 -0.8 -2.8 3-dehydroquinate dehydratase compare
PS417_16510 -0.8 -3.5 Clp protease ClpX compare
PS417_28220 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_08130 -0.8 -1.6 aspartate aminotransferase compare
PS417_23390 -0.8 -4.6 ubiquinol oxidase subunit II compare
PS417_21430 -0.8 -1.1 3-oxoacyl-ACP synthase compare
PS417_02485 -0.8 -1.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01850 -0.8 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21105 -0.7 -5.2 aminodeoxychorismate synthase compare
PS417_27835 -0.7 -4.4 endoribonuclease compare
PS417_22520 -0.7 -1.1 histidine kinase compare
PS417_00705 -0.7 -1.4 MarR family transcriptional regulator compare
PS417_06895 -0.7 -2.6 DNA-binding protein compare
PS417_00385 -0.7 -1.1 Fur family transcriptional regulator compare
PS417_26990 -0.7 -0.6 RNA pyrophosphohydrolase compare
PS417_02950 -0.7 -3.0 tRNA-dihydrouridine synthase B compare
PS417_24605 -0.7 -2.4 thiamine-phosphate pyrophosphorylase compare
PS417_27425 -0.7 -3.4 exopolyphosphatase compare
PS417_13240 -0.7 -1.9 siderophore biosynthesis protein compare
PS417_20715 -0.7 -1.4 cytochrome Cbb3 compare
PS417_07565 -0.7 -1.5 hypothetical protein compare
PS417_24225 -0.7 -1.6 hypothetical protein compare
PS417_06530 -0.7 -1.9 membrane protein compare
PS417_16320 -0.7 -1.9 protein tyrosine phosphatase compare
PS417_21480 -0.7 -1.0 23S rRNA pseudouridylate synthase compare
PS417_13075 -0.7 -1.3 hypothetical protein compare
PS417_01290 -0.7 -1.5 ADP-ribose diphosphatase compare
PS417_15095 -0.7 -1.7 hypothetical protein compare
PS417_23615 -0.7 -1.1 sulfate transporter compare
PS417_24085 -0.7 -1.8 protein RnfH compare
PS417_06075 -0.7 -1.3 hypothetical protein compare
PS417_09245 -0.7 -1.1 recombinase RdgC compare
PS417_27795 -0.7 -0.4 orotate phosphoribosyltransferase compare
PS417_21630 -0.6 -1.3 magnesium transporter compare
PS417_19655 -0.6 -2.2 chemotaxis protein CheW compare
PS417_21830 -0.6 -1.5 TetR family transcriptional regulator compare
PS417_13620 -0.6 -1.6 thermostable hemolysin compare
PS417_27705 -0.6 -1.2 amino acid dehydrogenase compare
PS417_15160 -0.6 -2.3 hypothetical protein compare
PS417_19675 -0.6 -2.7 chemotaxis protein CheY compare
PS417_21845 -0.6 -1.2 membrane protein compare
PS417_01965 -0.6 -1.3 fimbriae biosynthesis protein compare
PS417_11925 -0.6 -1.3 hypothetical protein compare
PS417_09915 -0.6 -0.9 hypothetical protein compare
PS417_09600 -0.6 -2.2 glycosyl transferase family 1 compare
PS417_21655 -0.6 -0.8 aspartate kinase compare
PS417_26335 -0.6 -1.3 BetI family transcriptional regulator compare
PS417_07820 -0.6 -1.1 transposase compare
PS417_08685 -0.6 -1.0 flagellar hook-length control protein FliK compare
PS417_27870 -0.6 -1.3 ATP-dependent DNA helicase RecG compare
PS417_11380 -0.6 -2.3 peptidylprolyl isomerase compare
PS417_27690 -0.6 -2.5 XRE family transcriptional regulator compare
PS417_07140 -0.6 -2.0 peptidase M48 compare
PS417_14855 -0.6 -1.5 gluconolactonase compare
PS417_20880 -0.6 -1.2 GntR family transcriptional regulator compare
PS417_04375 -0.6 -0.8 ABC transporter ATP-binding protein compare
PS417_22005 -0.6 -2.1 epimerase compare
PS417_08510 -0.6 -0.7 LysR family transcriptional regulator compare
PS417_27715 -0.6 -1.6 Fe-S oxidoreductase compare
PS417_21710 -0.6 -1.8 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_07305 -0.6 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_00945 -0.6 -1.5 sulfate ABC transporter ATP-binding protein compare
PS417_22115 -0.6 -1.9 transcriptional regulator compare
PS417_27515 -0.5 -1.9 heme biosynthesis protein HemY compare
PS417_18435 -0.5 -1.5 hypothetical protein compare
PS417_14755 -0.5 -1.6 UV damage repair endonuclease UvdE compare
PS417_02365 -0.5 -1.4 hypothetical protein compare
PS417_00085 -0.5 -0.9 16S rRNA methyltransferase compare
PS417_10920 -0.5 -1.8 LysR family transcriptional regulator compare
PS417_03045 -0.5 -1.1 hypothetical protein compare
PS417_17155 -0.5 -1.5 cytochrome B561 compare
PS417_25180 -0.5 -2.6 hypothetical protein compare
PS417_12805 -0.5 -3.7 glycogen branching protein compare
PS417_26390 -0.5 -1.2 acyltransferase compare
PS417_14515 -0.5 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23900 -0.5 -2.8 poly(A) polymerase compare
PS417_02425 -0.5 -2.2 thiosulfate sulfurtransferase compare
PS417_07950 -0.5 -2.3 MFS transporter compare
PS417_27245 -0.5 -1.1 aminotransferase DegT compare
PS417_17925 -0.5 -0.9 acyl-CoA dehydrogenase compare
PS417_03455 -0.5 -0.9 type III secretion protein compare
PS417_18800 -0.5 -1.7 hypothetical protein compare
PS417_23205 -0.5 -1.2 transcriptional regulator compare
PS417_08225 -0.5 -1.5 acetolactate synthase compare
PS417_09730 -0.5 -1.6 adenylylsulfate kinase compare
PS417_27290 -0.5 -1.1 hypothetical protein compare
PS417_23375 -0.5 -1.0 cytochrome C oxidase compare
PS417_15200 -0.5 -2.1 protein activator of alkane oxidation PraB compare
PS417_17755 -0.5 -1.8 hypothetical protein compare
PS417_01560 -0.5 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_20940 -0.5 -2.0 invasion protein IagB compare
PS417_18140 -0.5 -2.1 hypothetical protein compare
PS417_10550 -0.5 -2.9 DNA topoisomerase III compare
PS417_12585 -0.5 -2.6 acriflavine resistance protein B compare
PS417_28080 -0.5 -3.7 phosphate ABC transporter permease compare
PS417_01825 -0.5 -1.0 chemotaxis protein compare
PS417_27065 -0.5 -1.6 hypothetical protein compare
PS417_27605 -0.5 -2.9 hypothetical protein compare
PS417_12565 -0.5 -1.4 2-dehydro-3-deoxygluconokinase compare
PS417_04270 -0.5 -2.9 ribonuclease G compare
PS417_27490 -0.5 -1.3 hypothetical protein compare
PS417_03785 -0.5 -1.0 pilus assembly protein PilV compare
PS417_01270 -0.5 -1.1 iron ABC transporter substrate-binding protein compare
PS417_14065 -0.5 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_04300 -0.5 -2.1 FagA protein compare
PS417_26525 -0.5 -2.5 DEAD/DEAH box helicase compare
PS417_04170 -0.5 -2.1 stringent starvation protein A compare
PS417_23775 -0.4 -0.7 exodeoxyribonuclease V subunit beta compare
PS417_15400 -0.4 -1.0 hypothetical protein compare
PS417_18845 -0.4 -1.3 peptidase compare
PS417_00870 -0.4 -1.6 hypothetical protein compare
PS417_25650 -0.4 -1.9 anhydro-N-acetylmuramic acid kinase compare
PS417_24800 -0.4 -2.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_13625 -0.4 -1.9 cytochrome B561 compare
PS417_02630 -0.4 -0.7 NAD synthetase compare
PS417_06200 -0.4 -1.9 protein-PII uridylyltransferase compare
PS417_08170 -0.4 -3.2 capsular biosynthesis protein compare
PS417_18355 -0.4 -3.2 DNA-binding protein compare
PS417_13205 -0.4 -0.9 isochorismate-pyruvate lyase compare
PS417_02175 -0.4 -1.2 transcriptional regulator compare
PS417_19240 -0.4 -1.8 peptidase M42 compare
PS417_11345 -0.4 -1.6 membrane protein compare
PS417_22680 -0.4 -1.8 chemotaxis protein CheY compare
PS417_23080 -0.4 -1.3 sugar ABC transporter ATPase compare
PS417_23910 -0.4 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_11400 -0.4 -1.1 phosphoglycerate mutase compare
PS417_24935 -0.4 -0.6 hypothetical protein compare
PS417_10995 -0.4 -1.4 GntR family transcriptional regulator compare
PS417_17845 -0.4 -1.6 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
PS417_24775 -0.4 -1.6 dehydratase compare
PS417_13990 -0.4 -1.2 LysR family transcriptional regulator compare
PS417_17390 -0.4 -1.8 DSBA oxidoreductase compare
PS417_27865 -0.4 -1.4 LysR family transcriptional regulator compare
PS417_05975 -0.4 -0.4 chemotaxis protein CheW compare
PS417_06730 -0.4 -0.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_22715 -0.4 -1.1 heme oxygenase compare
PS417_07855 -0.4 -1.6 hypothetical protein compare
PS417_12175 -0.4 -1.4 peptide ABC transporter permease compare
PS417_26645 -0.4 -1.4 chemotaxis protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress 80% Methanol across organisms