Experiment set32S545 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_24800 -8.6 -6.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_28070 -7.7 -9.2 phosphate ABC transporter ATP-binding protein compare
PS417_27865 -6.7 -3.8 LysR family transcriptional regulator compare
PS417_00045 -6.6 -2.0 glycerol acyltransferase compare
PS417_28080 -6.4 -15.1 phosphate ABC transporter permease compare
PS417_10645 -6.0 -12.9 magnesium ABC transporter ATPase compare
PS417_28075 -5.9 -8.3 phosphate ABC transporter permease compare
PS417_06770 -5.6 -6.9 multidrug transporter compare
PS417_28085 -5.5 -8.4 phosphate-binding protein compare
PS417_13870 -5.2 -5.7 hypothetical protein compare
PS417_00650 -5.1 -1.6 LysR family transcriptional regulator compare
PS417_01955 -5.1 -12.0 peptidase compare
PS417_26500 -4.9 -5.9 thioesterase compare
PS417_08155 -4.5 -2.3 integration host factor subunit beta compare
PS417_23915 -4.2 -5.5 pantoate--beta-alanine ligase compare
PS417_23375 -4.2 -1.6 cytochrome C oxidase compare
PS417_27135 -4.1 -1.2 glutamine synthetase compare
PS417_02255 -4.1 -3.5 lipopolysaccharide kinase compare
PS417_06775 -4.0 -3.7 antibiotic transporter compare
PS417_00665 -4.0 -7.5 RND transporter compare
PS417_23385 -4.0 -11.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_03830 -3.9 -9.9 protein disaggregation chaperone compare
PS417_11460 -3.9 -6.6 divalent metal cation transporter MntH compare
PS417_00475 -3.9 -6.5 membrane protein compare
PS417_23380 -3.7 -3.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_17215 -3.5 -3.9 peptidylprolyl isomerase compare
PS417_00440 -3.5 -8.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_05365 -3.4 -3.3 FAD-binding protein compare
PS417_23390 -3.4 -5.9 ubiquinol oxidase subunit II compare
PS417_26985 -3.3 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27435 -3.3 -10.8 polyphosphate kinase compare
PS417_05590 -3.3 -11.2 iron ABC transporter ATP-binding protein compare
PS417_28050 -3.2 -2.3 hypothetical protein compare
PS417_00655 -3.2 -4.6 DSBA oxidoreductase compare
PS417_06365 -3.2 -9.1 RNA polymerase sigma factor compare
PS417_00345 -3.2 -3.3 copper-binding protein compare
PS417_08170 -3.2 -12.7 capsular biosynthesis protein compare
PS417_27605 -3.2 -8.5 hypothetical protein compare
PS417_00660 -3.1 -3.0 DSBA oxidoreductase compare
PS417_23950 -3.1 -2.1 polynucleotide phosphorylase/polyadenylase compare
PS417_26365 -3.1 -3.6 EmrB/QacA subfamily drug resistance transporter compare
PS417_25405 -3.1 -12.9 catalase compare
PS417_02280 -3.0 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_16370 -3.0 -9.7 chemotaxis protein CheY compare
PS417_27295 -2.8 -8.4 hypothetical protein compare
PS417_01915 -2.8 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06895 -2.8 -4.3 DNA-binding protein compare
PS417_06530 -2.8 -3.2 membrane protein compare
PS417_20775 -2.6 -4.7 coproporphyrinogen III oxidase compare
PS417_24585 -2.6 -8.7 AMP nucleosidase compare
PS417_05885 -2.6 -6.7 potassium transporter Kup compare
PS417_22620 -2.6 -3.6 pyruvate kinase compare
PS417_08090 -2.6 -1.1 3-oxoacyl-ACP reductase compare
PS417_04380 -2.6 -1.3 ABC transporter permease compare
PS417_04385 -2.5 -2.5 organic solvent ABC transporter substrate-binding protein compare
PS417_27245 -2.5 -2.4 aminotransferase DegT compare
PS417_03560 -2.5 -1.9 GTP-binding protein compare
PS417_02270 -2.5 -3.4 carbamoyltransferase compare
PS417_22195 -2.4 -7.5 peptidase compare
PS417_02555 -2.4 -8.0 exoribonuclease R compare
PS417_01950 -2.4 -5.7 malate dehydrogenase compare
PS417_02485 -2.4 -4.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27195 -2.4 -1.7 N-acetylglutamate synthase compare
PS417_01565 -2.3 -5.8 imidazole glycerol phosphate synthase compare
PS417_15075 -2.3 -12.3 NAD-glutamate dehydrogenase compare
PS417_07515 -2.3 -12.5 aconitate hydratase compare
PS417_06335 -2.3 -2.9 S-formylglutathione hydrolase compare
PS417_21430 -2.3 -2.1 3-oxoacyl-ACP synthase compare
PS417_03625 -2.3 -6.7 lipid A 3-O-deacylase compare
PS417_02510 -2.3 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26730 -2.2 -0.9 pyrroline-5-carboxylate reductase compare
PS417_01855 -2.2 -3.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_25400 -2.2 -6.2 bacterioferritin compare
PS417_05595 -2.2 -9.9 ornithine carbamoyltransferase compare
PS417_24745 -2.1 -2.9 gamma-glutamyl phosphate reductase compare
PS417_04420 -2.1 -8.4 histidinol dehydrogenase compare
PS417_22735 -2.1 -9.0 thiol oxidoreductase compare
PS417_14045 -2.1 -4.9 alkyl hydroperoxide reductase compare
PS417_08125 -2.1 -0.6 prephenate dehydratase compare
PS417_06375 -2.1 -0.6 deoxycytidine triphosphate deaminase compare
PS417_03935 -2.1 -2.6 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_07710 -2.1 -3.1 membrane protein compare
PS417_22565 -2.1 -0.6 formyltetrahydrofolate deformylase compare
PS417_12595 -2.1 -2.5 transcriptional regulator compare
PS417_01550 -2.0 -5.9 cell envelope biogenesis protein AsmA compare
PS417_22690 -2.0 -4.7 phosphogluconate dehydratase compare
PS417_05500 -2.0 -3.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_02175 -2.0 -3.6 transcriptional regulator compare
PS417_04390 -2.0 -2.1 toluene tolerance protein compare
PS417_06330 -2.0 -2.9 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_05610 -2.0 -4.4 bacterioferritin compare
PS417_27610 -2.0 -4.6 hypothetical protein compare
PS417_23900 -2.0 -9.7 poly(A) polymerase compare
PS417_12695 -1.9 -4.7 mannitol dehydrogenase compare
PS417_22740 -1.9 -8.5 imelysin compare
PS417_13885 -1.9 -3.2 chemotaxis protein CheY compare
PS417_10720 -1.9 -2.9 chemotaxis protein CheY compare
PS417_06680 -1.9 -5.2 nuclease PIN compare
PS417_26775 -1.9 -5.3 thiazole synthase compare
PS417_24705 -1.9 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_24615 -1.9 -0.9 hypothetical protein compare
PS417_07140 -1.9 -4.2 peptidase M48 compare
PS417_22450 -1.9 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_24605 -1.9 -2.8 thiamine-phosphate pyrophosphorylase compare
PS417_05650 -1.8 -3.3 leucyl-tRNA synthetase compare
PS417_03990 -1.8 -11.3 ligand-gated channel protein compare
PS417_01920 -1.8 -1.0 ATP-dependent protease subunit HslV compare
PS417_05210 -1.8 -8.1 copper oxidase compare
PS417_08310 -1.8 -4.0 alpha/beta hydrolase compare
PS417_07510 -1.8 -7.0 aspartyl beta-hydroxylase compare
PS417_07165 -1.7 -3.2 dihydrodipicolinate synthase compare
PS417_23370 -1.7 -2.2 protoheme IX farnesyltransferase compare
PS417_23995 -1.7 -1.0 preprotein translocase subunit SecG compare
PS417_22775 -1.7 -6.0 histidine kinase compare
PS417_21320 -1.7 -3.6 transcriptional regulator compare
PS417_06325 -1.7 -8.6 LysR family transcriptional regulator compare
PS417_04585 -1.6 -1.1 hypothetical protein compare
PS417_06200 -1.6 -5.6 protein-PII uridylyltransferase compare
PS417_15800 -1.6 -5.0 photosynthetic protein synthase I compare
PS417_09325 -1.6 -2.8 peptidase S41 compare
PS417_24600 -1.6 -6.0 hydrogenase compare
PS417_27795 -1.5 -0.6 orotate phosphoribosyltransferase compare
PS417_15805 -1.5 -1.9 transporter compare
PS417_02990 -1.5 -2.7 hypothetical protein compare
PS417_27515 -1.5 -3.2 heme biosynthesis protein HemY compare
PS417_22745 -1.5 -3.9 hypothetical protein compare
PS417_20130 -1.5 -9.4 dehydrogenase compare
PS417_04875 -1.5 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_01575 -1.5 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22935 -1.4 -2.6 hypothetical protein compare
PS417_03995 -1.4 -5.7 Fe(II)-dependent oxygenase compare
PS417_22700 -1.4 -3.4 RNA polymerase subunit sigma-24 compare
PS417_08665 -1.4 -2.8 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_24265 -1.4 -4.6 ABC transporter ATP-binding protein compare
PS417_08415 -1.4 -7.5 hypothetical protein compare
PS417_16160 -1.4 -2.0 ABC transporter substrate-binding protein compare
PS417_02975 -1.4 -3.0 3-dehydroquinate dehydratase compare
PS417_22270 -1.4 -4.1 hypothetical protein compare
PS417_07640 -1.4 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04415 -1.4 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_07565 -1.4 -2.6 hypothetical protein compare
PS417_21695 -1.4 -2.5 succinylglutamate-semialdehyde dehydrogenase compare
PS417_27255 -1.4 -4.5 glycine cleavage system protein T compare
PS417_09600 -1.4 -4.5 glycosyl transferase family 1 compare
PS417_12655 -1.3 -3.7 methionine aminopeptidase compare
PS417_04915 -1.3 -2.0 glutamine ABC transporter ATP-binding protein compare
PS417_06845 -1.3 -1.7 lipoprotein compare
PS417_18355 -1.3 -5.0 DNA-binding protein compare
PS417_27640 -1.3 -1.2 TetR family transcriptional regulator compare
PS417_01180 -1.3 -7.3 ribosomal protein S6 modification protein compare
PS417_01850 -1.3 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_14125 -1.3 -3.2 molybdenum ABC transporter ATP-binding protein compare
PS417_27535 -1.3 -5.1 chemotaxis protein CheY compare
PS417_27870 -1.3 -2.5 ATP-dependent DNA helicase RecG compare
PS417_19350 -1.3 -2.9 GTP cyclohydrolase compare
PS417_13120 -1.3 -4.5 aspartyl beta-hydroxylase compare
PS417_07170 -1.3 -3.0 hypothetical protein compare
PS417_02495 -1.2 -3.8 GTPase HflX compare
PS417_21655 -1.2 -1.2 aspartate kinase compare
PS417_27835 -1.2 -4.0 endoribonuclease compare
PS417_04365 -1.2 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26990 -1.2 -0.6 RNA pyrophosphohydrolase compare
PS417_13510 -1.2 -1.0 polyketide cyclase compare
PS417_04410 -1.2 -1.5 hypothetical protein compare
PS417_28265 -1.2 -0.8 pyridoxamine kinase compare
PS417_27125 -1.2 -5.3 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_02225 -1.2 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_27105 -1.2 -3.6 spermidine/putrescine ABC transporter permease compare
PS417_21625 -1.2 -1.0 DNA-binding protein compare
PS417_01580 -1.2 -1.4 imidazole glycerol phosphate synthase compare
PS417_24370 -1.2 -0.9 (2Fe-2S)-binding protein compare
PS417_22685 -1.2 -5.3 Glucokinase (EC 2.7.1.2) (from data) compare
PS417_16310 -1.2 -2.5 membrane protein compare
PS417_27785 -1.2 -5.4 phosphoglucomutase compare
PS417_07615 -1.2 -4.8 TetR family transcriptional regulator compare
PS417_07955 -1.2 -4.8 malate:quinone oxidoreductase compare
PS417_17000 -1.2 -2.7 MerR family transcriptional regulator compare
PS417_22065 -1.2 -5.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_04865 -1.2 -1.7 molybdenum cofactor biosynthesis protein MoaC compare
PS417_16360 -1.2 -3.2 histidine kinase compare
PS417_23160 -1.1 -2.3 50S rRNA methyltransferase compare
PS417_22610 -1.1 -3.6 pilus assembly protein PilZ compare
PS417_25765 -1.1 -1.7 transcriptional regulator compare
PS417_24885 -1.1 -2.3 transcriptional regulator compare
PS417_27705 -1.1 -1.5 amino acid dehydrogenase compare
PS417_21275 -1.1 -6.9 GntR family transcriptional regulator compare
PS417_11705 -1.1 -4.3 cyclic peptide transporter compare
PS417_00180 -1.1 -1.8 tryptophan synthase subunit alpha compare
PS417_24680 -1.1 -8.5 murein transglycosylase compare
PS417_05815 -1.1 -3.6 recombinase RecA compare
PS417_27290 -1.1 -1.7 hypothetical protein compare
PS417_04000 -1.1 -5.6 hypothetical protein compare
PS417_06205 -1.1 -4.4 methionine aminopeptidase compare
PS417_25720 -1.1 -4.1 anthranilate synthase component II compare
PS417_22535 -1.1 -3.4 ornithine acetyltransferase compare
PS417_15135 -1.1 -1.5 hypothetical protein compare
PS417_09605 -1.1 -2.2 glycosyl transferase compare
PS417_09590 -1.1 -4.5 membrane protein compare
PS417_23775 -1.1 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_07550 -1.1 -5.1 lytic transglycosylase compare


Specific Phenotypes

For 28 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms