Experiment set32S543 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 2 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.1 -3.3 pantoate--beta-alanine ligase compare
PS417_16555 -4.0 -2.7 cupin compare
PS417_03260 -3.0 -1.5 5S ribosomal RNA compare
PS417_23545 -3.0 -3.1 gamma-glutamyl kinase compare
PS417_28050 -2.9 -2.2 hypothetical protein compare
PS417_27870 -2.8 -3.3 ATP-dependent DNA helicase RecG compare
PS417_06680 -2.8 -5.9 nuclease PIN compare
PS417_04380 -2.6 -1.7 ABC transporter permease compare
PS417_24605 -2.5 -4.6 thiamine-phosphate pyrophosphorylase compare
PS417_21480 -2.5 -2.0 23S rRNA pseudouridylate synthase compare
PS417_27195 -2.5 -1.4 N-acetylglutamate synthase compare
PS417_01855 -2.2 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_24600 -2.2 -5.7 hydrogenase compare
PS417_23375 -2.2 -2.8 cytochrome C oxidase compare
PS417_08410 -2.1 -3.3 hypothetical protein compare
PS417_08125 -2.1 -0.8 prephenate dehydratase compare
PS417_06375 -2.1 -0.8 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.1 -0.8 formyltetrahydrofolate deformylase compare
PS417_26775 -2.0 -7.4 thiazole synthase compare
PS417_27425 -2.0 -6.1 exopolyphosphatase compare
PS417_22570 -2.0 -1.3 H-NS histone compare
PS417_24745 -1.9 -3.3 gamma-glutamyl phosphate reductase compare
PS417_10645 -1.8 -4.9 magnesium ABC transporter ATPase compare
PS417_16490 -1.8 -1.5 cell division protein FtsK compare
PS417_19350 -1.8 -4.2 GTP cyclohydrolase compare
PS417_02555 -1.7 -9.3 exoribonuclease R compare
PS417_21430 -1.7 -1.9 3-oxoacyl-ACP synthase compare
PS417_13510 -1.7 -1.5 polyketide cyclase compare
PS417_09590 -1.6 -4.5 membrane protein compare
PS417_05595 -1.6 -7.4 ornithine carbamoyltransferase compare
PS417_23380 -1.6 -2.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_02255 -1.5 -2.4 lipopolysaccharide kinase compare
PS417_02485 -1.5 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24500 -1.5 -2.9 DEAD/DEAH box helicase compare
PS417_22450 -1.4 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_00385 -1.4 -1.6 Fur family transcriptional regulator compare
PS417_00220 -1.4 -2.3 hypothetical protein compare
PS417_22445 -1.4 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_09600 -1.4 -4.5 glycosyl transferase family 1 compare
PS417_02975 -1.4 -4.5 3-dehydroquinate dehydratase compare
PS417_07710 -1.4 -3.0 membrane protein compare
PS417_09210 -1.4 -2.4 TetR family transcriptional regulator compare
PS417_15465 -1.4 -3.5 carboxynorspermidine decarboxylase compare
PS417_04420 -1.3 -6.6 histidinol dehydrogenase compare
PS417_26990 -1.3 -1.0 RNA pyrophosphohydrolase compare
PS417_03380 -1.3 -1.3 hypothetical protein compare
PS417_27865 -1.3 -2.8 LysR family transcriptional regulator compare
PS417_28080 -1.2 -7.8 phosphate ABC transporter permease compare
PS417_01850 -1.2 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01565 -1.2 -5.2 imidazole glycerol phosphate synthase compare
PS417_28070 -1.2 -5.0 phosphate ABC transporter ATP-binding protein compare
PS417_01575 -1.2 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23385 -1.2 -4.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_23390 -1.1 -4.6 ubiquinol oxidase subunit II compare
PS417_02270 -1.1 -3.5 carbamoyltransferase compare
PS417_06685 -1.1 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_00755 -1.1 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_02950 -1.1 -1.9 tRNA-dihydrouridine synthase B compare
PS417_04390 -1.1 -2.1 toluene tolerance protein compare
PS417_02880 -1.1 -0.9 copper chaperone compare
PS417_23810 -1.0 -5.7 acetolactate synthase 3 catalytic subunit compare
PS417_09615 -1.0 -3.5 glycosyl transferase family 1 compare
PS417_23025 -1.0 -3.4 murein transglycosylase compare
PS417_22895 -1.0 -6.7 tyrosine recombinase XerD compare
PS417_08580 -1.0 -3.9 histidine kinase compare
PS417_18310 -1.0 -0.8 hypothetical protein compare
PS417_02870 -1.0 -4.8 TonB-dependent receptor compare
PS417_26835 -1.0 -1.9 3-mercaptopyruvate sulfurtransferase compare
PS417_09595 -1.0 -4.1 membrane protein compare
PS417_01580 -0.9 -1.2 imidazole glycerol phosphate synthase compare
PS417_08685 -0.9 -1.3 flagellar hook-length control protein FliK compare
PS417_10265 -0.9 -2.3 peptidase compare
PS417_23910 -0.9 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_06205 -0.9 -5.5 methionine aminopeptidase compare
PS417_27075 -0.9 -2.4 thiol-disulfide isomerase compare
PS417_19675 -0.9 -3.7 chemotaxis protein CheY compare
PS417_09830 -0.9 -4.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_01570 -0.9 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22990 -0.9 -1.3 iron dicitrate transport regulator FecR compare
PS417_23575 -0.9 -2.0 hypothetical protein compare
PS417_15100 -0.9 -1.9 BatB protein compare
PS417_27605 -0.9 -5.1 hypothetical protein compare
PS417_02510 -0.9 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_10810 -0.9 -2.0 hypothetical protein compare
PS417_05695 -0.9 -3.6 transcriptional regulator compare
PS417_21070 -0.9 -1.7 aconitate hydratase compare
PS417_09730 -0.9 -3.0 adenylylsulfate kinase compare
PS417_11705 -0.9 -2.9 cyclic peptide transporter compare
PS417_05160 -0.9 -1.3 DNA polymerase III subunit chi compare
PS417_04385 -0.8 -1.6 organic solvent ABC transporter substrate-binding protein compare
PS417_18545 -0.8 -1.7 cell division protein compare
PS417_20985 -0.8 -0.6 porin compare
PS417_11185 -0.8 -2.6 dimethylallyltransferase compare
PS417_20855 -0.8 -1.3 hypothetical protein compare
PS417_18355 -0.8 -4.6 DNA-binding protein compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_02865 -0.8 -3.0 peptidase compare
PS417_14515 -0.8 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_06145 -0.8 -1.1 hypothetical protein compare
PS417_03830 -0.8 -5.3 protein disaggregation chaperone compare
PS417_19425 -0.8 -1.0 allantoicase compare
PS417_18425 -0.8 -1.3 sporulation protein compare
PS417_07170 -0.8 -3.0 hypothetical protein compare
PS417_00180 -0.8 -1.4 tryptophan synthase subunit alpha compare
PS417_06945 -0.8 -1.1 membrane protein compare
PS417_23805 -0.8 -2.5 acetolactate synthase 3 regulatory subunit compare
PS417_12595 -0.8 -1.8 transcriptional regulator compare
PS417_09680 -0.8 -1.5 hydrolase compare
PS417_23950 -0.8 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_23370 -0.8 -1.5 protoheme IX farnesyltransferase compare
PS417_27595 -0.7 -1.1 recombinase XerC compare
PS417_15370 -0.7 -2.6 kinase compare
PS417_02765 -0.7 -1.5 phosphate starvation-inducible protein PsiF compare
PS417_04440 -0.7 -1.9 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_22520 -0.7 -1.1 histidine kinase compare
PS417_28230 -0.7 -1.5 transcriptional regulator compare
PS417_22375 -0.7 -0.8 cold-shock protein compare
PS417_25390 -0.7 -1.7 MFS transporter compare
PS417_08990 -0.7 -3.5 ABC transporter substrate-binding protein compare
PS417_08155 -0.7 -0.8 integration host factor subunit beta compare
PS417_18710 -0.7 -3.4 hypothetical protein compare
PS417_21425 -0.7 -1.5 4-amino-4-deoxychorismate lyase compare
PS417_00845 -0.7 -1.3 transcriptional regulator compare
PS417_06775 -0.7 -3.5 antibiotic transporter compare
PS417_02070 -0.7 -0.9 membrane protein compare
PS417_07615 -0.7 -2.5 TetR family transcriptional regulator compare
PS417_09585 -0.7 -3.4 acetyltransferase compare
PS417_08170 -0.7 -4.1 capsular biosynthesis protein compare
PS417_09470 -0.7 -0.8 hypothetical protein compare
PS417_05820 -0.7 -2.1 recombinase RecX compare
PS417_22840 -0.7 -1.3 tRNA-Met compare
PS417_13425 -0.7 -2.0 cupin compare
PS417_02355 -0.7 -3.8 thiamine biosynthesis protein ThiC compare
PS417_05815 -0.7 -2.1 recombinase RecA compare
PS417_17610 -0.7 -1.3 AsnC family transcriptional regulator compare
PS417_24370 -0.7 -0.7 (2Fe-2S)-binding protein compare
PS417_05830 -0.7 -2.4 hypothetical protein compare
PS417_04415 -0.7 -3.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_24235 -0.7 -2.5 hypothetical protein compare
PS417_09625 -0.7 -2.5 sugar ABC transporter substrate-binding protein compare
PS417_20030 -0.7 -1.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_26985 -0.7 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23900 -0.7 -3.5 poly(A) polymerase compare
PS417_01560 -0.7 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_00975 -0.6 -1.2 hypothetical protein compare
PS417_21270 -0.6 -1.5 translation initiation factor 2 compare
PS417_11720 -0.6 -1.7 class V aminotransferase compare
PS417_03560 -0.6 -0.8 GTP-binding protein compare
PS417_19285 -0.6 -1.0 ankyrin compare
PS417_16665 -0.6 -1.4 hypothetical protein compare
PS417_27180 -0.6 -1.2 peroxidase compare
PS417_19955 -0.6 -1.2 hypothetical protein compare
PS417_19160 -0.6 -3.5 hypothetical protein compare
PS417_04705 -0.6 -1.2 hypothetical protein compare
PS417_02705 -0.6 -1.2 urease accessory protein UreF compare
PS417_27585 -0.6 -1.0 diaminopimelate epimerase compare
PS417_23080 -0.6 -2.7 sugar ABC transporter ATPase compare
PS417_15705 -0.6 -1.6 nitrate reductase compare
PS417_22690 -0.6 -1.5 phosphogluconate dehydratase compare
PS417_22620 -0.6 -3.0 pyruvate kinase compare
PS417_23170 -0.6 -1.5 FeS assembly protein IscX compare
PS417_14400 -0.6 -1.7 hypothetical protein compare
PS417_13055 -0.6 -1.4 aminotransferase compare
PS417_19225 -0.6 -2.7 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
PS417_27705 -0.6 -1.1 amino acid dehydrogenase compare
PS417_27610 -0.6 -3.8 hypothetical protein compare
PS417_17935 -0.6 -1.9 endoribonuclease L-PSP compare
PS417_19275 -0.6 -1.0 hypothetical protein compare
PS417_21600 -0.6 -3.2 pilus assembly protein PilZ compare
PS417_06675 -0.6 -1.3 ATP-dependent helicase compare
PS417_22400 -0.6 -3.9 7-cyano-7-deazaguanine synthase compare
PS417_08545 -0.6 -1.1 aromatic ring-opening dioxygenase LigB compare
PS417_04875 -0.6 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00465 -0.6 -1.7 hypothetical protein compare
PS417_22575 -0.6 -2.7 exonuclease I compare
PS417_28515 -0.6 -1.0 16S rRNA methyltransferase compare
PS417_14755 -0.6 -1.1 UV damage repair endonuclease UvdE compare
PS417_26640 -0.6 -2.5 hypothetical protein compare
PS417_21285 -0.6 -2.1 hypothetical protein compare
PS417_12310 -0.6 -2.6 methionine synthase compare
PS417_03705 -0.6 -2.0 2-alkenal reductase compare
PS417_23250 -0.6 -2.4 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_04305 -0.6 -1.0 aspartate ammonia-lyase compare
PS417_21725 -0.6 -2.3 amino acid transporter compare
PS417_21320 -0.6 -1.8 transcriptional regulator compare
PS417_10995 -0.6 -1.2 GntR family transcriptional regulator compare
PS417_12795 -0.6 -3.7 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_07620 -0.6 -1.0 beta-hexosaminidase compare
PS417_02395 -0.6 -1.6 DNA topoisomerase IV subunit B compare
PS417_13270 -0.5 -2.3 lipoprotein compare
PS417_04990 -0.5 -1.8 GIY-YIG nuclease compare
PS417_12925 -0.5 -2.4 serine dehydratase compare
PS417_13800 -0.5 -1.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02155 -0.5 -1.9 chemotaxis protein compare
PS417_00160 -0.5 -1.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_16885 -0.5 -1.7 hypothetical protein compare
PS417_03285 -0.5 -2.2 chromosome partitioning protein compare
PS417_12935 -0.5 -1.7 RNA polymerase sigma factor compare
PS417_01270 -0.5 -1.4 iron ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms