Experiment set32S542 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -3.9 -6.0 pantoate--beta-alanine ligase compare
PS417_22450 -3.8 -2.5 ATP-dependent DNA helicase RuvA compare
PS417_27195 -3.8 -2.0 N-acetylglutamate synthase compare
PS417_28050 -3.6 -2.8 hypothetical protein compare
PS417_06680 -3.4 -5.7 nuclease PIN compare
PS417_04365 -2.7 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23380 -2.4 -3.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_09590 -2.3 -6.9 membrane protein compare
PS417_21430 -2.2 -2.1 3-oxoacyl-ACP synthase compare
PS417_22565 -2.1 -0.8 formyltetrahydrofolate deformylase compare
PS417_08125 -2.0 -0.8 prephenate dehydratase compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_09245 -2.0 -2.3 recombinase RdgC compare
PS417_22570 -2.0 -1.3 H-NS histone compare
PS417_09600 -1.9 -4.4 glycosyl transferase family 1 compare
PS417_26775 -1.8 -8.9 thiazole synthase compare
PS417_01605 -1.8 -1.7 phosphoglycerate mutase compare
PS417_21655 -1.7 -1.9 aspartate kinase compare
PS417_23810 -1.7 -8.6 acetolactate synthase 3 catalytic subunit compare
PS417_02485 -1.7 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02880 -1.6 -1.3 copper chaperone compare
PS417_19350 -1.6 -3.8 GTP cyclohydrolase compare
PS417_02555 -1.6 -8.8 exoribonuclease R compare
PS417_04380 -1.5 -1.2 ABC transporter permease compare
PS417_24600 -1.5 -4.7 hydrogenase compare
PS417_10645 -1.4 -3.9 magnesium ABC transporter ATPase compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_27865 -1.4 -3.0 LysR family transcriptional regulator compare
PS417_08540 -1.4 -2.5 RNA helicase compare
PS417_13075 -1.4 -1.7 hypothetical protein compare
PS417_27425 -1.4 -5.5 exopolyphosphatase compare
PS417_27870 -1.4 -2.5 ATP-dependent DNA helicase RecG compare
PS417_28070 -1.3 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_01920 -1.3 -1.2 ATP-dependent protease subunit HslV compare
PS417_02255 -1.3 -2.1 lipopolysaccharide kinase compare
PS417_23805 -1.3 -4.1 acetolactate synthase 3 regulatory subunit compare
PS417_23995 -1.3 -1.1 preprotein translocase subunit SecG compare
PS417_22445 -1.2 -1.8 ATP-dependent DNA helicase RuvB compare
PS417_09595 -1.2 -4.2 membrane protein compare
PS417_03260 -1.2 -1.3 5S ribosomal RNA compare
PS417_10675 -1.2 -1.4 TetR family transcriptional regulator compare
PS417_03830 -1.2 -7.4 protein disaggregation chaperone compare
PS417_09585 -1.2 -5.3 acetyltransferase compare
PS417_26990 -1.1 -0.7 RNA pyrophosphohydrolase compare
PS417_12595 -1.1 -2.3 transcriptional regulator compare
PS417_02270 -1.1 -2.2 carbamoyltransferase compare
PS417_09615 -1.1 -2.9 glycosyl transferase family 1 compare
PS417_24745 -1.1 -1.8 gamma-glutamyl phosphate reductase compare
PS417_17945 -1.1 -1.0 hypothetical protein compare
PS417_08580 -1.1 -3.4 histidine kinase compare
PS417_28080 -1.0 -6.8 phosphate ABC transporter permease compare
PS417_04875 -1.0 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_16555 -1.0 -1.3 cupin compare
PS417_23950 -1.0 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_19835 -1.0 -2.0 flagellar biosynthesis protein FliS compare
PS417_26730 -1.0 -0.6 pyrroline-5-carboxylate reductase compare
PS417_23385 -1.0 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_02720 -1.0 -1.0 TetR family transcriptional regulator compare
PS417_07120 -1.0 -3.7 RNA polymerase sigma-H factor compare
PS417_00345 -1.0 -1.2 copper-binding protein compare
PS417_14755 -1.0 -1.6 UV damage repair endonuclease UvdE compare
PS417_24605 -1.0 -1.9 thiamine-phosphate pyrophosphorylase compare
PS417_08220 -1.0 -1.0 epimerase compare
PS417_02560 -1.0 -0.9 23S rRNA methyltransferase compare
PS417_27665 -1.0 -3.5 diguanylate cyclase compare
PS417_15540 -0.9 -1.8 NUDIX hydrolase compare
PS417_21425 -0.9 -1.1 4-amino-4-deoxychorismate lyase compare
PS417_27135 -0.9 -0.7 glutamine synthetase compare
PS417_02885 -0.9 -1.6 hypothetical protein compare
PS417_27605 -0.9 -3.5 hypothetical protein compare
PS417_11705 -0.9 -4.8 cyclic peptide transporter compare
PS417_02975 -0.9 -1.5 3-dehydroquinate dehydratase compare
PS417_02915 -0.9 -2.8 precorrin-3B C17-methyltransferase compare
PS417_08170 -0.8 -6.3 capsular biosynthesis protein compare
PS417_01875 -0.8 -2.0 polyhydroxyalkanoic acid system protein compare
PS417_23900 -0.8 -4.6 poly(A) polymerase compare
PS417_20985 -0.8 -0.5 porin compare
PS417_00385 -0.8 -1.1 Fur family transcriptional regulator compare
PS417_22895 -0.8 -4.1 tyrosine recombinase XerD compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_04390 -0.8 -2.1 toluene tolerance protein compare
PS417_20855 -0.8 -1.0 hypothetical protein compare
PS417_27245 -0.8 -1.5 aminotransferase DegT compare
PS417_09235 -0.8 -0.9 molecular chaperone compare
PS417_27075 -0.8 -2.1 thiol-disulfide isomerase compare
PS417_15085 -0.8 -2.6 ATPase AAA compare
PS417_14140 -0.8 -1.8 membrane protein compare
PS417_11390 -0.8 -2.9 LysR family transcriptional regulator compare
PS417_18040 -0.8 -1.4 general secretion pathway protein GspN compare
PS417_08360 -0.8 -1.6 DoxX family protein compare
PS417_22935 -0.8 -2.8 hypothetical protein compare
PS417_06540 -0.7 -1.2 membrane protein compare
PS417_16510 -0.7 -2.5 Clp protease ClpX compare
PS417_05445 -0.7 -1.2 DNA mismatch repair protein MutT compare
PS417_19955 -0.7 -1.4 hypothetical protein compare
PS417_21870 -0.7 -2.1 glycerophosphodiester phosphodiesterase compare
PS417_05985 -0.7 -0.9 chemotaxis protein CheY compare
PS417_19705 -0.7 -1.1 flagellar biosynthesis regulator FlhF compare
PS417_22520 -0.7 -0.8 histidine kinase compare
PS417_14985 -0.7 -0.9 Fe-S protein compare
PS417_19665 -0.7 -2.1 flagellar motor protein MotD compare
PS417_19645 -0.7 -1.8 chemotaxis protein compare
PS417_13175 -0.7 -2.1 iron transporter compare
PS417_19790 -0.7 -2.2 ATP synthase compare
PS417_05815 -0.7 -2.7 recombinase RecA compare
PS417_19885 -0.7 -1.3 flagellar basal body rod protein FlgG compare
PS417_23715 -0.7 -2.2 cupin compare
PS417_26985 -0.7 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02370 -0.7 -1.4 ADP-ribose pyrophosphatase compare
PS417_25710 -0.7 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_14925 -0.7 -1.9 2-methylcitrate dehydratase compare
PS417_06205 -0.7 -4.1 methionine aminopeptidase compare
PS417_24500 -0.7 -1.5 DEAD/DEAH box helicase compare
PS417_09625 -0.7 -2.8 sugar ABC transporter substrate-binding protein compare
PS417_01565 -0.7 -3.5 imidazole glycerol phosphate synthase compare
PS417_26605 -0.7 -0.7 malonate decarboxylase subunit beta compare
PS417_21480 -0.7 -0.7 23S rRNA pseudouridylate synthase compare
PS417_21105 -0.7 -4.3 aminodeoxychorismate synthase compare
PS417_18425 -0.7 -1.1 sporulation protein compare
PS417_19850 -0.7 -3.7 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_21065 -0.7 -1.6 3-methylitaconate isomerase compare
PS417_10455 -0.7 -2.3 membrane protein compare
PS417_18360 -0.7 -1.2 hypothetical protein compare
PS417_09420 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_08685 -0.6 -1.1 flagellar hook-length control protein FliK compare
PS417_23390 -0.6 -3.2 ubiquinol oxidase subunit II compare
PS417_23370 -0.6 -2.3 protoheme IX farnesyltransferase compare
PS417_06895 -0.6 -2.0 DNA-binding protein compare
PS417_14065 -0.6 -3.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_02210 -0.6 -2.6 diguanylate cyclase compare
PS417_15805 -0.6 -1.2 transporter compare
PS417_18710 -0.6 -2.9 hypothetical protein compare
PS417_08045 -0.6 -1.8 uracil permease compare
PS417_18395 -0.6 -2.0 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_05820 -0.6 -1.4 recombinase RecX compare
PS417_19675 -0.6 -2.0 chemotaxis protein CheY compare
PS417_11925 -0.6 -1.2 hypothetical protein compare
PS417_21090 -0.6 -2.0 hypothetical protein compare
PS417_01435 -0.6 -1.0 hypothetical protein compare
PS417_07845 -0.6 -1.4 transcriptional regulator compare
PS417_18055 -0.6 -1.0 general secretion pathway protein GspK compare
PS417_09865 -0.6 -1.4 hypothetical protein compare
PS417_09335 -0.6 -1.4 HAD family hydrolase compare
PS417_07640 -0.6 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_25815 -0.6 -1.4 magnesium transporter ApaG compare
PS417_19800 -0.6 -2.1 flagellar motor switch protein FliG compare
PS417_15465 -0.6 -1.7 carboxynorspermidine decarboxylase compare
PS417_06455 -0.6 -1.5 Fe(II)-dependent oxygenase compare
PS417_27435 -0.6 -3.2 polyphosphate kinase compare
PS417_28510 -0.5 -2.9 chromosome partitioning protein compare
PS417_27640 -0.5 -0.8 TetR family transcriptional regulator compare
PS417_19865 -0.5 -3.8 flagellar hook protein FlgK compare
PS417_21630 -0.5 -1.1 magnesium transporter compare
PS417_20030 -0.5 -1.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_20185 -0.5 -1.6 ketosteroid isomerase compare
PS417_06490 -0.5 -2.1 hypothetical protein compare
PS417_15880 -0.5 -2.0 GNAT family acetyltransferase compare
PS417_16850 -0.5 -2.1 cation:proton antiporter compare
PS417_13425 -0.5 -1.2 cupin compare
PS417_13510 -0.5 -0.7 polyketide cyclase compare
PS417_02510 -0.5 -2.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_09200 -0.5 -2.2 ABC transporter compare
PS417_27040 -0.5 -0.9 3-phosphoglycerate dehydrogenase compare
PS417_10040 -0.5 -0.7 MFS transporter compare
PS417_08740 -0.5 -1.0 ribose-phosphate pyrophosphokinase compare
PS417_08105 -0.5 -4.2 N-ethylammeline chlorohydrolase compare
PS417_01030 -0.5 -0.8 glutamine ABC transporter substrate-binding protein compare
PS417_13620 -0.5 -1.1 thermostable hemolysin compare
PS417_00085 -0.5 -1.1 16S rRNA methyltransferase compare
PS417_04420 -0.5 -3.0 histidinol dehydrogenase compare
PS417_18020 -0.5 -1.4 hypothetical protein compare
PS417_18355 -0.5 -3.2 DNA-binding protein compare
PS417_21830 -0.5 -2.3 TetR family transcriptional regulator compare
PS417_26815 -0.5 -0.9 peptidase M16 compare
PS417_04705 -0.5 -1.3 hypothetical protein compare
PS417_22040 -0.5 -1.7 GNAT family acetyltransferase compare
PS417_25700 -0.5 -1.4 cyclic AMP receptor protein compare
PS417_19860 -0.5 -4.2 flagellar hook protein FlgL compare
PS417_22535 -0.5 -2.8 ornithine acetyltransferase compare
PS417_03785 -0.5 -1.1 pilus assembly protein PilV compare
PS417_19415 -0.5 -1.7 allantoinase compare
PS417_06500 -0.5 -0.5 hypothetical protein compare
PS417_05500 -0.5 -1.5 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_27290 -0.5 -0.7 hypothetical protein compare
PS417_23625 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_19755 -0.5 -1.1 flagellar motor switch protein FliM compare
PS417_14905 -0.5 -1.6 C4-dicarboxylate ABC transporter compare
PS417_01575 -0.5 -1.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25290 -0.5 -1.3 hypothetical protein compare
PS417_12015 -0.5 -2.0 phosphoglycerate mutase compare
PS417_19425 -0.5 -0.6 allantoicase compare
PS417_05595 -0.5 -3.2 ornithine carbamoyltransferase compare
PS417_04530 -0.5 -1.5 glycerate dehydrogenase compare
PS417_19695 -0.5 -4.2 flagellar biosynthesis sigma factor compare
PS417_12970 -0.5 -2.5 FMN-dependent NADH-azoreductase compare
PS417_24535 -0.5 -1.5 membrane protein compare
PS417_11110 -0.5 -2.6 xylose isomerase compare
PS417_17755 -0.5 -1.5 hypothetical protein compare
PS417_07540 -0.5 -1.1 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_10815 -0.5 -2.3 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms