Experiment set32S541 for Pseudomonas simiae WCS417

Compare to:

Scopoletin 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.7 -5.6 pantoate--beta-alanine ligase compare
PS417_03260 -3.1 -1.4 5S ribosomal RNA compare
PS417_04365 -2.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06245 -2.7 -2.5 zinc metallopeptidase RseP compare
PS417_04380 -2.5 -1.5 ABC transporter permease compare
PS417_06680 -2.4 -6.4 nuclease PIN compare
PS417_16490 -2.4 -1.6 cell division protein FtsK compare
PS417_28050 -2.3 -2.0 hypothetical protein compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_10645 -1.9 -4.9 magnesium ABC transporter ATPase compare
PS417_02485 -1.8 -5.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02280 -1.8 -1.3 GlcNAc-PI de-N-acetylase compare
PS417_23810 -1.8 -7.4 acetolactate synthase 3 catalytic subunit compare
PS417_00385 -1.8 -1.6 Fur family transcriptional regulator compare
PS417_24600 -1.7 -4.5 hydrogenase compare
PS417_27865 -1.7 -1.9 LysR family transcriptional regulator compare
PS417_26775 -1.6 -6.7 thiazole synthase compare
PS417_02555 -1.6 -8.7 exoribonuclease R compare
PS417_09600 -1.6 -4.0 glycosyl transferase family 1 compare
PS417_27195 -1.5 -1.4 N-acetylglutamate synthase compare
PS417_27425 -1.5 -5.2 exopolyphosphatase compare
PS417_00755 -1.4 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_01620 -1.4 -1.7 preprotein translocase subunit SecB compare
PS417_11705 -1.4 -6.7 cyclic peptide transporter compare
PS417_23545 -1.4 -2.3 gamma-glutamyl kinase compare
PS417_23950 -1.4 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_28070 -1.4 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_09590 -1.4 -2.5 membrane protein compare
PS417_06600 -1.3 -1.1 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_19835 -1.3 -2.0 flagellar biosynthesis protein FliS compare
PS417_19675 -1.3 -2.7 chemotaxis protein CheY compare
PS417_21625 -1.3 -1.2 DNA-binding protein compare
PS417_23995 -1.2 -0.9 preprotein translocase subunit SecG compare
PS417_23775 -1.2 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_09595 -1.2 -3.9 membrane protein compare
PS417_02975 -1.2 -4.7 3-dehydroquinate dehydratase compare
PS417_09585 -1.2 -5.1 acetyltransferase compare
PS417_01560 -1.2 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_16715 -1.2 -1.7 DoxX family protein compare
PS417_19275 -1.2 -1.6 hypothetical protein compare
PS417_19350 -1.1 -3.4 GTP cyclohydrolase compare
PS417_26990 -1.1 -0.7 RNA pyrophosphohydrolase compare
PS417_24935 -1.1 -1.1 hypothetical protein compare
PS417_28080 -1.1 -6.7 phosphate ABC transporter permease compare
PS417_23390 -1.1 -4.0 ubiquinol oxidase subunit II compare
PS417_21480 -1.1 -0.9 23S rRNA pseudouridylate synthase compare
PS417_19850 -1.1 -5.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_02255 -1.1 -2.3 lipopolysaccharide kinase compare
PS417_22895 -1.1 -5.3 tyrosine recombinase XerD compare
PS417_08170 -1.1 -5.4 capsular biosynthesis protein compare
PS417_24605 -1.0 -2.5 thiamine-phosphate pyrophosphorylase compare
PS417_08540 -1.0 -1.9 RNA helicase compare
PS417_23805 -1.0 -2.4 acetolactate synthase 3 regulatory subunit compare
PS417_14065 -1.0 -4.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_05985 -1.0 -2.2 chemotaxis protein CheY compare
PS417_27870 -1.0 -2.1 ATP-dependent DNA helicase RecG compare
PS417_06620 -1.0 -2.1 hypothetical protein compare
PS417_22520 -1.0 -1.1 histidine kinase compare
PS417_03455 -1.0 -1.5 type III secretion protein compare
PS417_26370 -1.0 -3.3 RNA helicase compare
PS417_01915 -1.0 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22620 -1.0 -2.3 pyruvate kinase compare
PS417_08410 -1.0 -1.3 hypothetical protein compare
PS417_05815 -1.0 -2.7 recombinase RecA compare
PS417_26770 -1.0 -1.8 tRNA (guanine-N7)-methyltransferase compare
PS417_14985 -1.0 -2.0 Fe-S protein compare
PS417_11380 -0.9 -1.9 peptidylprolyl isomerase compare
PS417_23380 -0.9 -1.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_02865 -0.9 -2.8 peptidase compare
PS417_21655 -0.9 -1.1 aspartate kinase compare
PS417_02270 -0.9 -1.8 carbamoyltransferase compare
PS417_02365 -0.9 -2.5 hypothetical protein compare
PS417_09615 -0.9 -3.2 glycosyl transferase family 1 compare
PS417_14240 -0.9 -1.4 isochorismatase compare
PS417_06205 -0.9 -4.6 methionine aminopeptidase compare
PS417_04305 -0.9 -1.4 aspartate ammonia-lyase compare
PS417_17610 -0.9 -0.8 AsnC family transcriptional regulator compare
PS417_11615 -0.8 -1.7 urea ABC transporter ATP-binding protein compare
PS417_04390 -0.8 -1.5 toluene tolerance protein compare
PS417_02720 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_02415 -0.8 -2.0 phosphoserine phosphatase compare
PS417_06730 -0.8 -1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_27515 -0.8 -2.3 heme biosynthesis protein HemY compare
PS417_22445 -0.8 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_18310 -0.8 -0.4 hypothetical protein compare
PS417_03300 -0.8 -1.7 alanine acetyltransferase compare
PS417_25780 -0.8 -2.2 molecular chaperone DnaJ compare
PS417_02160 -0.8 -1.0 hypothetical protein compare
PS417_13050 -0.8 -1.5 N-acetylglucosamine-6-sulfatase compare
PS417_19425 -0.8 -0.9 allantoicase compare
PS417_23900 -0.8 -4.0 poly(A) polymerase compare
PS417_03560 -0.8 -0.7 GTP-binding protein compare
PS417_13085 -0.8 -1.9 FMN-dependent NADH-azoreductase compare
PS417_19840 -0.8 -5.9 flagellar cap protein FliD compare
PS417_18455 -0.8 -1.4 hypothetical protein compare
PS417_23375 -0.8 -1.1 cytochrome C oxidase compare
PS417_17565 -0.8 -1.8 branched-chain amino acid aminotransferase compare
PS417_19605 -0.8 -1.1 hypothetical protein compare
PS417_16855 -0.8 -1.6 cation:proton antiporter compare
PS417_13055 -0.7 -1.0 aminotransferase compare
PS417_22530 -0.7 -4.5 hypothetical protein compare
PS417_07170 -0.7 -2.1 hypothetical protein compare
PS417_19955 -0.7 -1.2 hypothetical protein compare
PS417_18355 -0.7 -3.3 DNA-binding protein compare
PS417_11390 -0.7 -2.5 LysR family transcriptional regulator compare
PS417_27435 -0.7 -2.3 polyphosphate kinase compare
PS417_05200 -0.7 -1.7 DNA recombination protein RecO compare
PS417_05105 -0.7 -2.3 membrane protein compare
PS417_00925 -0.7 -1.5 hypothetical protein compare
PS417_03830 -0.7 -3.9 protein disaggregation chaperone compare
PS417_21475 -0.7 -1.2 HAD family hydrolase compare
PS417_10245 -0.7 -1.3 hypothetical protein compare
PS417_23910 -0.7 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_24135 -0.7 -1.6 hypothetical protein compare
PS417_11945 -0.7 -1.5 hypothetical protein compare
PS417_18710 -0.7 -3.0 hypothetical protein compare
PS417_23370 -0.7 -2.1 protoheme IX farnesyltransferase compare
PS417_09210 -0.7 -1.3 TetR family transcriptional regulator compare
PS417_27715 -0.7 -1.3 Fe-S oxidoreductase compare
PS417_09620 -0.7 -4.2 lipopolysaccharide biosynthesis protein compare
PS417_19095 -0.7 -1.3 hypothetical protein compare
PS417_16510 -0.7 -3.1 Clp protease ClpX compare
PS417_27040 -0.7 -1.7 3-phosphoglycerate dehydrogenase compare
PS417_12805 -0.7 -5.5 glycogen branching protein compare
PS417_19520 -0.7 -1.3 transcriptional regulator compare
PS417_23385 -0.7 -3.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_07615 -0.7 -2.6 TetR family transcriptional regulator compare
PS417_12015 -0.7 -1.2 phosphoglycerate mutase compare
PS417_01750 -0.7 -1.9 histidine ammonia-lyase compare
PS417_07940 -0.7 -1.4 hypothetical protein compare
PS417_14655 -0.7 -0.9 lysine transporter LysE compare
PS417_01945 -0.7 -2.1 nuclease compare
PS417_22175 -0.7 -1.0 amino acid transporter LysE compare
PS417_24745 -0.7 -1.4 gamma-glutamyl phosphate reductase compare
PS417_03780 -0.7 -1.4 general secretion pathway protein GspH compare
PS417_07695 -0.7 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_17430 -0.7 -2.6 aldehyde dehydrogenase compare
PS417_06075 -0.7 -1.3 hypothetical protein compare
PS417_18420 -0.7 -2.8 deoxyribonuclease compare
PS417_06540 -0.7 -0.8 membrane protein compare
PS417_04270 -0.7 -4.2 ribonuclease G compare
PS417_14110 -0.6 -2.4 2-nitropropane dioxygenase compare
PS417_14980 -0.6 -0.8 universal stress protein UspA compare
PS417_09740 -0.6 -1.7 RNA polymerase subunit sigma-24 compare
PS417_06280 -0.6 -0.9 ribonuclease HII compare
PS417_08685 -0.6 -0.8 flagellar hook-length control protein FliK compare
PS417_02870 -0.6 -3.5 TonB-dependent receptor compare
PS417_06735 -0.6 -1.2 3-oxoadipate enol-lactonase compare
PS417_11180 -0.6 -2.0 TetR family transcriptional regulator compare
PS417_27605 -0.6 -2.8 hypothetical protein compare
PS417_12585 -0.6 -3.4 acriflavine resistance protein B compare
PS417_01850 -0.6 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26695 -0.6 -1.0 uracil phosphoribosyltransferase compare
PS417_26420 -0.6 -1.1 hypothetical protein compare
PS417_24125 -0.6 -1.8 hypothetical protein compare
PS417_13490 -0.6 -1.4 hypothetical protein compare
PS417_28515 -0.6 -1.2 16S rRNA methyltransferase compare
PS417_12520 -0.6 -1.4 hypothetical protein compare
PS417_17440 -0.6 -1.5 beta-lactamase compare
PS417_14515 -0.6 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_26335 -0.6 -1.4 BetI family transcriptional regulator compare
PS417_21070 -0.6 -1.5 aconitate hydratase compare
PS417_23080 -0.6 -2.9 sugar ABC transporter ATPase compare
PS417_01030 -0.6 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_04310 -0.6 -3.2 hypothetical protein compare
PS417_28010 -0.6 -2.6 pyridine nucleotide-disulfide oxidoreductase compare
PS417_19730 -0.6 -1.6 flagellar biosynthesis protein FliR compare
PS417_05860 -0.6 -1.3 hypothetical protein compare
PS417_11925 -0.6 -1.3 hypothetical protein compare
PS417_05065 -0.6 -1.0 hypothetical protein compare
PS417_02740 -0.6 -1.0 LysR family transcriptional regulator compare
PS417_22050 -0.6 -2.1 ribonuclease BN compare
PS417_07710 -0.6 -1.6 membrane protein compare
PS417_19415 -0.6 -1.2 allantoinase compare
PS417_24345 -0.6 -2.9 ubiquinol oxidase subunit II compare
PS417_27585 -0.6 -0.8 diaminopimelate epimerase compare
PS417_19860 -0.6 -4.8 flagellar hook protein FlgL compare
PS417_06530 -0.6 -1.4 membrane protein compare
PS417_05825 -0.6 -2.3 cytochrome D ubiquinol oxidase subunit II compare
PS417_20520 -0.6 -1.9 3-phosphoglycerate kinase compare
PS417_13790 -0.6 -1.9 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_21830 -0.6 -1.8 TetR family transcriptional regulator compare
PS417_10185 -0.6 -1.8 hypothetical protein compare
PS417_24310 -0.6 -1.5 ankyrin compare
PS417_20055 -0.6 -1.3 cob(II)yrinic acid a,c-diamide reductase compare
PS417_21630 -0.6 -1.0 magnesium transporter compare
PS417_17935 -0.6 -2.0 endoribonuclease L-PSP compare
PS417_17840 -0.6 -1.4 betaine-aldehyde dehydrogenase compare
PS417_23160 -0.5 -1.7 50S rRNA methyltransferase compare
PS417_02950 -0.5 -0.9 tRNA-dihydrouridine synthase B compare
PS417_22350 -0.5 -1.3 Fis family transcriptional regulator compare
PS417_14045 -0.5 -2.5 alkyl hydroperoxide reductase compare
PS417_05210 -0.5 -2.5 copper oxidase compare
PS417_28075 -0.5 -1.7 phosphate ABC transporter permease compare
PS417_24270 -0.5 -3.0 threonine transporter RhtB compare
PS417_24615 -0.5 -0.8 hypothetical protein compare
PS417_04320 -0.5 -2.1 divalent cation transporter compare
PS417_01605 -0.5 -0.5 phosphoglycerate mutase compare
PS417_14260 -0.5 -1.5 phosphate ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Scopoletin across organisms