Experiment set32S539 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28070 -8.6 -6.0 phosphate ABC transporter ATP-binding protein compare
PS417_27865 -6.5 -4.0 LysR family transcriptional regulator compare
PS417_06770 -6.0 -7.2 multidrug transporter compare
PS417_28080 -6.0 -13.1 phosphate ABC transporter permease compare
PS417_28075 -5.9 -6.8 phosphate ABC transporter permease compare
PS417_06775 -5.6 -7.0 antibiotic transporter compare
PS417_11460 -5.3 -7.3 divalent metal cation transporter MntH compare
PS417_28085 -5.2 -6.8 phosphate-binding protein compare
PS417_00650 -4.9 -1.6 LysR family transcriptional regulator compare
PS417_26365 -4.7 -5.2 EmrB/QacA subfamily drug resistance transporter compare
PS417_01955 -4.7 -12.1 peptidase compare
PS417_24800 -4.6 -6.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_23380 -4.6 -3.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_00045 -4.5 -2.1 glycerol acyltransferase compare
PS417_02255 -4.4 -3.8 lipopolysaccharide kinase compare
PS417_25405 -4.2 -15.5 catalase compare
PS417_10645 -4.2 -13.2 magnesium ABC transporter ATPase compare
PS417_23385 -4.2 -7.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_06335 -4.0 -4.7 S-formylglutathione hydrolase compare
PS417_06330 -3.9 -4.9 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_17215 -3.7 -4.4 peptidylprolyl isomerase compare
PS417_23390 -3.7 -7.8 ubiquinol oxidase subunit II compare
PS417_22450 -3.7 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_00660 -3.6 -4.7 DSBA oxidoreductase compare
PS417_00655 -3.6 -6.6 DSBA oxidoreductase compare
PS417_13885 -3.5 -4.8 chemotaxis protein CheY compare
PS417_23915 -3.4 -2.6 pantoate--beta-alanine ligase compare
PS417_26500 -3.4 -3.6 thioesterase compare
PS417_00665 -3.4 -5.4 RND transporter compare
PS417_03830 -3.2 -7.5 protein disaggregation chaperone compare
PS417_02485 -3.1 -4.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27295 -3.1 -9.0 hypothetical protein compare
PS417_06680 -2.9 -6.4 nuclease PIN compare
PS417_00475 -2.9 -5.1 membrane protein compare
PS417_23375 -2.9 -2.3 cytochrome C oxidase compare
PS417_02270 -2.9 -4.7 carbamoyltransferase compare
PS417_27195 -2.8 -1.8 N-acetylglutamate synthase compare
PS417_00440 -2.8 -7.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_05590 -2.8 -9.5 iron ABC transporter ATP-binding protein compare
PS417_06325 -2.8 -10.9 LysR family transcriptional regulator compare
PS417_27870 -2.7 -3.2 ATP-dependent DNA helicase RecG compare
PS417_18310 -2.7 -1.5 hypothetical protein compare
PS417_28050 -2.7 -1.9 hypothetical protein compare
PS417_01550 -2.6 -6.3 cell envelope biogenesis protein AsmA compare
PS417_05595 -2.6 -9.3 ornithine carbamoyltransferase compare
PS417_04365 -2.6 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_03625 -2.6 -5.7 lipid A 3-O-deacylase compare
PS417_02555 -2.5 -9.9 exoribonuclease R compare
PS417_01920 -2.5 -1.0 ATP-dependent protease subunit HslV compare
PS417_02510 -2.5 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08170 -2.4 -10.9 capsular biosynthesis protein compare
PS417_04380 -2.4 -1.4 ABC transporter permease compare
PS417_27245 -2.4 -2.3 aminotransferase DegT compare
PS417_24585 -2.3 -10.8 AMP nucleosidase compare
PS417_15075 -2.3 -9.9 NAD-glutamate dehydrogenase compare
PS417_05610 -2.3 -4.7 bacterioferritin compare
PS417_01855 -2.3 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_22620 -2.3 -3.9 pyruvate kinase compare
PS417_02880 -2.3 -1.8 copper chaperone compare
PS417_12695 -2.2 -5.3 mannitol dehydrogenase compare
PS417_07710 -2.2 -3.0 membrane protein compare
PS417_07510 -2.2 -5.6 aspartyl beta-hydroxylase compare
PS417_07140 -2.2 -4.7 peptidase M48 compare
PS417_16555 -2.2 -2.1 cupin compare
PS417_09590 -2.2 -3.8 membrane protein compare
PS417_26730 -2.1 -1.0 pyrroline-5-carboxylate reductase compare
PS417_25400 -2.1 -5.4 bacterioferritin compare
PS417_27135 -2.1 -1.0 glutamine synthetase compare
PS417_23370 -2.1 -5.4 protoheme IX farnesyltransferase compare
PS417_14045 -2.1 -4.5 alkyl hydroperoxide reductase compare
PS417_03260 -2.1 -1.3 5S ribosomal RNA compare
PS417_27605 -2.0 -5.6 hypothetical protein compare
PS417_01565 -2.0 -5.7 imidazole glycerol phosphate synthase compare
PS417_08125 -2.0 -0.6 prephenate dehydratase compare
PS417_22690 -2.0 -3.5 phosphogluconate dehydratase compare
PS417_02225 -2.0 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23995 -2.0 -1.1 preprotein translocase subunit SecG compare
PS417_28230 -2.0 -3.1 transcriptional regulator compare
PS417_01560 -2.0 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_06375 -2.0 -0.6 deoxycytidine triphosphate deaminase compare
PS417_19940 -2.0 -9.2 membrane protein compare
PS417_22565 -2.0 -0.6 formyltetrahydrofolate deformylase compare
PS417_20130 -1.9 -11.4 dehydrogenase compare
PS417_27610 -1.9 -4.7 hypothetical protein compare
PS417_22735 -1.9 -7.4 thiol oxidoreductase compare
PS417_06205 -1.9 -6.9 methionine aminopeptidase compare
PS417_26775 -1.9 -7.6 thiazole synthase compare
PS417_01580 -1.9 -1.9 imidazole glycerol phosphate synthase compare
PS417_08155 -1.8 -1.5 integration host factor subunit beta compare
PS417_27435 -1.8 -6.0 polyphosphate kinase compare
PS417_04585 -1.8 -1.4 hypothetical protein compare
PS417_22570 -1.8 -1.0 H-NS histone compare
PS417_00345 -1.8 -1.8 copper-binding protein compare
PS417_13870 -1.8 -2.7 hypothetical protein compare
PS417_04420 -1.8 -8.3 histidinol dehydrogenase compare
PS417_12595 -1.8 -2.6 transcriptional regulator compare
PS417_24705 -1.8 -2.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_03990 -1.7 -12.8 ligand-gated channel protein compare
PS417_07165 -1.7 -3.8 dihydrodipicolinate synthase compare
PS417_04385 -1.7 -2.3 organic solvent ABC transporter substrate-binding protein compare
PS417_24615 -1.7 -0.8 hypothetical protein compare
PS417_08580 -1.7 -5.2 histidine kinase compare
PS417_04440 -1.7 -2.0 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_22445 -1.7 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_02720 -1.6 -1.2 TetR family transcriptional regulator compare
PS417_01950 -1.6 -4.6 malate dehydrogenase compare
PS417_08665 -1.6 -4.1 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_01270 -1.6 -2.5 iron ABC transporter substrate-binding protein compare
PS417_02175 -1.6 -3.1 transcriptional regulator compare
PS417_24570 -1.6 -4.1 AsnC family transcriptional regulator compare
PS417_25720 -1.6 -7.0 anthranilate synthase component II compare
PS417_01575 -1.6 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_24600 -1.6 -4.3 hydrogenase compare
PS417_06365 -1.5 -5.4 RNA polymerase sigma factor compare
PS417_26985 -1.5 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08420 -1.5 -5.0 lipoprotein compare
PS417_26605 -1.5 -1.4 malonate decarboxylase subunit beta compare
PS417_03560 -1.5 -1.4 GTP-binding protein compare
PS417_09600 -1.5 -4.1 glycosyl transferase family 1 compare
PS417_05815 -1.5 -2.9 recombinase RecA compare
PS417_22700 -1.5 -3.5 RNA polymerase subunit sigma-24 compare
PS417_15800 -1.5 -3.3 photosynthetic protein synthase I compare
PS417_04865 -1.5 -4.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_21695 -1.5 -2.8 succinylglutamate-semialdehyde dehydrogenase compare
PS417_05650 -1.4 -2.6 leucyl-tRNA synthetase compare
PS417_02975 -1.4 -3.1 3-dehydroquinate dehydratase compare
PS417_19350 -1.4 -5.0 GTP cyclohydrolase compare
PS417_22775 -1.4 -6.2 histidine kinase compare
PS417_03995 -1.4 -3.3 Fe(II)-dependent oxygenase compare
PS417_06200 -1.4 -4.4 protein-PII uridylyltransferase compare
PS417_21400 -1.4 -4.2 TetR family transcriptional regulator compare
PS417_22195 -1.4 -4.0 peptidase compare
PS417_15805 -1.4 -1.8 transporter compare
PS417_08415 -1.4 -8.1 hypothetical protein compare
PS417_07640 -1.4 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22575 -1.4 -5.6 exonuclease I compare
PS417_24675 -1.4 -2.8 lipoyl synthase compare
PS417_16980 -1.3 -5.3 exonuclease III compare
PS417_22935 -1.3 -2.6 hypothetical protein compare
PS417_24745 -1.3 -2.1 gamma-glutamyl phosphate reductase compare
PS417_22685 -1.3 -4.7 Glucokinase (EC 2.7.1.2) (from data) compare
PS417_05210 -1.3 -5.9 copper oxidase compare
PS417_22715 -1.3 -3.7 heme oxygenase compare
PS417_23900 -1.3 -6.9 poly(A) polymerase compare
PS417_22535 -1.3 -5.3 ornithine acetyltransferase compare
PS417_19705 -1.3 -1.7 flagellar biosynthesis regulator FlhF compare
PS417_09210 -1.3 -1.9 TetR family transcriptional regulator compare
PS417_07170 -1.3 -3.5 hypothetical protein compare
PS417_21105 -1.3 -7.4 aminodeoxychorismate synthase compare
PS417_07550 -1.3 -6.1 lytic transglycosylase compare
PS417_21320 -1.3 -3.4 transcriptional regulator compare
PS417_27110 -1.3 -3.5 spermidine/putrescine ABC transporter permease compare
PS417_16370 -1.3 -5.1 chemotaxis protein CheY compare
PS417_06685 -1.3 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_22745 -1.2 -5.7 hypothetical protein compare
PS417_00370 -1.2 -1.0 hypothetical protein compare
PS417_05885 -1.2 -5.5 potassium transporter Kup compare
PS417_27185 -1.2 -7.2 porin compare
PS417_24605 -1.2 -3.1 thiamine-phosphate pyrophosphorylase compare
PS417_27535 -1.2 -5.3 chemotaxis protein CheY compare
PS417_09605 -1.2 -1.8 glycosyl transferase compare
PS417_27515 -1.2 -3.1 heme biosynthesis protein HemY compare
PS417_27070 -1.2 -5.3 alpha/beta hydrolase compare
PS417_16310 -1.2 -3.2 membrane protein compare
PS417_04390 -1.2 -1.3 toluene tolerance protein compare
PS417_08685 -1.2 -1.4 flagellar hook-length control protein FliK compare
PS417_22740 -1.2 -4.7 imelysin compare
PS417_12445 -1.2 -5.0 6-phosphogluconate dehydrogenase compare
PS417_19190 -1.2 -2.7 BolA family transcriptional regulator compare
PS417_03000 -1.2 -2.8 translation initiation factor Sui1 compare
PS417_14125 -1.2 -4.5 molybdenum ABC transporter ATP-binding protein compare
PS417_22710 -1.2 -7.3 TonB-dependent receptor compare
PS417_09325 -1.2 -2.7 peptidase S41 compare
PS417_04595 -1.2 -1.7 cell division protein MraZ compare
PS417_01180 -1.2 -4.9 ribosomal protein S6 modification protein compare
PS417_09595 -1.2 -3.9 membrane protein compare
PS417_22065 -1.1 -4.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_27505 -1.1 -3.9 transcriptional regulator compare
PS417_08310 -1.1 -4.2 alpha/beta hydrolase compare
PS417_16710 -1.1 -2.3 hydrolase compare
PS417_04185 -1.1 -1.9 hypothetical protein compare
PS417_14115 -1.1 -4.0 molybdate ABC transporter substrate-binding protein compare
PS417_01715 -1.1 -1.3 hypothetical protein compare
PS417_01290 -1.1 -1.7 ADP-ribose diphosphatase compare
PS417_25730 -1.1 -4.6 phosphoglycolate phosphatase compare
PS417_20775 -1.1 -3.5 coproporphyrinogen III oxidase compare
PS417_09625 -1.1 -1.9 sugar ABC transporter substrate-binding protein compare
PS417_09615 -1.1 -2.8 glycosyl transferase family 1 compare
PS417_27255 -1.1 -4.4 glycine cleavage system protein T compare
PS417_11930 -1.1 -5.1 hypothetical protein compare
PS417_02365 -1.1 -3.2 hypothetical protein compare
PS417_19850 -1.1 -4.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_06530 -1.1 -2.2 membrane protein compare
PS417_23135 -1.1 -1.7 GTP-binding protein compare
PS417_06895 -1.1 -1.8 DNA-binding protein compare
PS417_27125 -1.1 -4.7 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_00900 -1.1 -1.7 4-aminobutyrate aminotransferase compare
PS417_15100 -1.0 -1.7 BatB protein compare
PS417_24680 -1.0 -7.6 murein transglycosylase compare
PS417_13120 -1.0 -4.0 aspartyl beta-hydroxylase compare


Specific Phenotypes

For 31 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms