Experiment set32S539 for Pseudomonas simiae WCS417

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Fraxetin 3 mM; solid stress

Group: solid stress
Media: + Fraxetin (3 mM)
Culturing: fluoroDangl_ML3b
By: Max Stassen on 29-Mar-24

Specific Phenotypes

For 31 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms

SEED Subsystems

Subsystem #Specific
Iron acquisition in Vibrio 3
Photorespiration (oxidative C2 cycle) 3
DNA repair, bacterial 2
Glycine and Serine Utilization 2
Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria 2
Transport of Iron 2
Allantoin Utilization 1
Copper homeostasis 1
D-galactarate, D-glucarate and D-glycerate catabolism 1
Glutamate dehydrogenases 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Glutathione-dependent pathway of formaldehyde detoxification 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Glycine cleavage system 1
Hemin transport system 1
Lactate utilization 1
Lipid A modifications 1
Lysine degradation 1
Oxidative stress 1
Pentose phosphate pathway 1
Serine-glyoxylate cycle 1
Ton and Tol transport systems 1
Transport of Manganese 1
Triacylglycerol metabolism 1
ZZ gjo need homes 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-glutamate degradation I 1 1 1
superoxide radicals degradation 2 2 1
methanol oxidation to formaldehyde IV 2 1 1
2-O-α-mannosyl-D-glycerate degradation 2 1 1
glycine cleavage 3 3 1
glycine biosynthesis II 3 3 1
ethanol degradation IV 3 3 1
pentose phosphate pathway (oxidative branch) I 3 3 1
L-alanine degradation II (to D-lactate) 3 3 1
ethene biosynthesis IV (engineered) 3 1 1
reactive oxygen species degradation 4 4 1
D-glucarate degradation I 4 3 1
D-galactarate degradation I 4 3 1
glycolate and glyoxylate degradation I 4 3 1
phospholipid remodeling (phosphatidylethanolamine, yeast) 4 2 1
superpathway of D-glucarate and D-galactarate degradation 5 4 1
superpathway of glycol metabolism and degradation 7 5 1
L-glutamate degradation XI (reductive Stickland reaction) 7 3 1
4-aminobutanoate degradation V 7 2 1
pentose phosphate pathway 8 8 1
2-deoxy-D-ribose degradation II 8 7 1
Entner-Doudoroff pathway II (non-phosphorylative) 9 6 1
photorespiration I 9 5 1
photorespiration III 9 5 1
peptidoglycan recycling II 10 8 1
photorespiration II 10 6 1
L-glutamate degradation V (via hydroxyglutarate) 10 6 1
formaldehyde assimilation I (serine pathway) 13 6 1
peptidoglycan recycling I 14 11 1
superpathway of glucose and xylose degradation 17 16 1
methylaspartate cycle 19 10 1
superpathway of microbial D-galacturonate and D-glucuronate degradation 31 13 1