Experiment set32S537 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 1 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_28070 -5.1 -8.3 phosphate ABC transporter ATP-binding protein compare
PS417_27865 -4.9 -4.8 LysR family transcriptional regulator compare
PS417_28050 -3.9 -3.2 hypothetical protein compare
PS417_28080 -3.5 -16.7 phosphate ABC transporter permease compare
PS417_27795 -3.3 -1.1 orotate phosphoribosyltransferase compare
PS417_06680 -2.8 -6.3 nuclease PIN compare
PS417_28085 -2.8 -15.5 phosphate-binding protein compare
PS417_18310 -2.7 -1.5 hypothetical protein compare
PS417_04365 -2.7 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04380 -2.5 -1.4 ABC transporter permease compare
PS417_26990 -2.4 -1.1 RNA pyrophosphohydrolase compare
PS417_27870 -2.4 -2.5 ATP-dependent DNA helicase RecG compare
PS417_27195 -2.4 -1.8 N-acetylglutamate synthase compare
PS417_00660 -2.3 -4.9 DSBA oxidoreductase compare
PS417_28075 -2.3 -5.1 phosphate ABC transporter permease compare
PS417_05365 -2.3 -2.7 FAD-binding protein compare
PS417_24600 -2.3 -6.4 hydrogenase compare
PS417_26775 -2.1 -9.1 thiazole synthase compare
PS417_23915 -2.1 -3.8 pantoate--beta-alanine ligase compare
PS417_06375 -2.1 -0.6 deoxycytidine triphosphate deaminase compare
PS417_22565 -2.1 -0.6 formyltetrahydrofolate deformylase compare
PS417_08125 -2.1 -0.6 prephenate dehydratase compare
PS417_23385 -2.0 -8.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_02485 -2.0 -3.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_14045 -1.9 -4.7 alkyl hydroperoxide reductase compare
PS417_06770 -1.9 -6.3 multidrug transporter compare
PS417_16555 -1.9 -1.9 cupin compare
PS417_02555 -1.9 -9.9 exoribonuclease R compare
PS417_21480 -1.9 -1.8 23S rRNA pseudouridylate synthase compare
PS417_23805 -1.9 -4.4 acetolactate synthase 3 regulatory subunit compare
PS417_06685 -1.8 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_27585 -1.8 -1.7 diaminopimelate epimerase compare
PS417_23375 -1.8 -2.2 cytochrome C oxidase compare
PS417_19955 -1.7 -1.2 hypothetical protein compare
PS417_03260 -1.7 -1.3 5S ribosomal RNA compare
PS417_23390 -1.6 -5.2 ubiquinol oxidase subunit II compare
PS417_02255 -1.6 -1.9 lipopolysaccharide kinase compare
PS417_23810 -1.5 -6.6 acetolactate synthase 3 catalytic subunit compare
PS417_11705 -1.5 -6.7 cyclic peptide transporter compare
PS417_24605 -1.5 -4.0 thiamine-phosphate pyrophosphorylase compare
PS417_27135 -1.5 -0.8 glutamine synthetase compare
PS417_20855 -1.5 -1.6 hypothetical protein compare
PS417_10040 -1.4 -1.3 MFS transporter compare
PS417_00045 -1.4 -1.7 glycerol acyltransferase compare
PS417_15075 -1.4 -6.9 NAD-glutamate dehydrogenase compare
PS417_04305 -1.4 -1.6 aspartate ammonia-lyase compare
PS417_00655 -1.4 -6.0 DSBA oxidoreductase compare
PS417_11945 -1.4 -2.0 hypothetical protein compare
PS417_23380 -1.4 -2.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_26605 -1.4 -1.2 malonate decarboxylase subunit beta compare
PS417_00175 -1.3 -1.3 CigR compare
PS417_10810 -1.3 -2.4 hypothetical protein compare
PS417_07170 -1.3 -3.3 hypothetical protein compare
PS417_23775 -1.3 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_06335 -1.3 -2.6 S-formylglutathione hydrolase compare
PS417_05590 -1.3 -6.5 iron ABC transporter ATP-binding protein compare
PS417_03000 -1.2 -3.5 translation initiation factor Sui1 compare
PS417_08220 -1.2 -1.0 epimerase compare
PS417_10645 -1.2 -3.4 magnesium ABC transporter ATPase compare
PS417_23370 -1.2 -2.9 protoheme IX farnesyltransferase compare
PS417_07710 -1.2 -2.9 membrane protein compare
PS417_22935 -1.2 -2.5 hypothetical protein compare
PS417_23900 -1.2 -5.2 poly(A) polymerase compare
PS417_25390 -1.2 -2.9 MFS transporter compare
PS417_22570 -1.2 -0.8 H-NS histone compare
PS417_04390 -1.2 -1.7 toluene tolerance protein compare
PS417_06775 -1.1 -4.8 antibiotic transporter compare
PS417_07565 -1.1 -1.8 hypothetical protein compare
PS417_22735 -1.1 -5.7 thiol oxidoreductase compare
PS417_21630 -1.1 -2.0 magnesium transporter compare
PS417_07640 -1.1 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_26985 -1.1 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27300 -1.1 -0.8 cell division protein ZapA compare
PS417_02975 -1.1 -3.4 3-dehydroquinate dehydratase compare
PS417_00665 -1.1 -5.7 RND transporter compare
PS417_22445 -1.1 -1.7 ATP-dependent DNA helicase RuvB compare
PS417_00375 -1.1 -1.7 membrane protein compare
PS417_09590 -1.1 -2.6 membrane protein compare
PS417_08170 -1.1 -6.6 capsular biosynthesis protein compare
PS417_01620 -1.1 -2.6 preprotein translocase subunit SecB compare
PS417_01915 -1.0 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_25405 -1.0 -7.0 catalase compare
PS417_25270 -1.0 -2.0 NrdR family transcriptional regulator compare
PS417_00650 -1.0 -0.9 LysR family transcriptional regulator compare
PS417_02865 -1.0 -3.1 peptidase compare
PS417_19350 -1.0 -3.4 GTP cyclohydrolase compare
PS417_01565 -1.0 -4.5 imidazole glycerol phosphate synthase compare
PS417_20130 -1.0 -7.6 dehydrogenase compare
PS417_14040 -1.0 -6.4 alkyl hydroperoxide reductase compare
PS417_23160 -1.0 -1.4 50S rRNA methyltransferase compare
PS417_17795 -1.0 -1.8 ABC transporter permease compare
PS417_22855 -1.0 -3.0 ssDNA exonuclease RecJ compare
PS417_24935 -1.0 -1.0 hypothetical protein compare
PS417_08410 -1.0 -1.7 hypothetical protein compare
PS417_04420 -1.0 -6.2 histidinol dehydrogenase compare
PS417_19415 -1.0 -2.9 allantoinase compare
PS417_27610 -1.0 -3.7 hypothetical protein compare
PS417_04385 -1.0 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_18070 -1.0 -1.1 general secretion pathway protein GspH compare
PS417_18360 -1.0 -2.4 hypothetical protein compare
PS417_24745 -1.0 -1.7 gamma-glutamyl phosphate reductase compare
PS417_22895 -0.9 -4.8 tyrosine recombinase XerD compare
PS417_27605 -0.9 -3.3 hypothetical protein compare
PS417_00385 -0.9 -1.0 Fur family transcriptional regulator compare
PS417_06200 -0.9 -4.0 protein-PII uridylyltransferase compare
PS417_08540 -0.9 -1.6 RNA helicase compare
PS417_22195 -0.9 -4.2 peptidase compare
PS417_27705 -0.9 -1.3 amino acid dehydrogenase compare
PS417_12655 -0.9 -3.7 methionine aminopeptidase compare
PS417_01955 -0.9 -6.1 peptidase compare
PS417_05210 -0.8 -3.2 copper oxidase compare
PS417_23910 -0.8 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_03560 -0.8 -1.1 GTP-binding protein compare
PS417_12855 -0.8 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15800 -0.8 -4.1 photosynthetic protein synthase I compare
PS417_21850 -0.8 -1.0 LysR family transcriptional regulator compare
PS417_15090 -0.8 -1.4 hypothetical protein compare
PS417_01575 -0.8 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_05500 -0.8 -2.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_03990 -0.8 -5.5 ligand-gated channel protein compare
PS417_11535 -0.8 -2.1 nicotinate phosphoribosyltransferase compare
PS417_19835 -0.8 -1.2 flagellar biosynthesis protein FliS compare
PS417_03935 -0.8 -2.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_09440 -0.8 -1.8 MerR family transcriptional regulator compare
PS417_27425 -0.8 -3.6 exopolyphosphatase compare
PS417_11940 -0.8 -5.0 TonB-dependent receptor compare
PS417_27245 -0.8 -1.6 aminotransferase DegT compare
PS417_01855 -0.8 -1.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_19755 -0.8 -1.4 flagellar motor switch protein FliM compare
PS417_02160 -0.8 -0.9 hypothetical protein compare
PS417_06730 -0.8 -1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_28230 -0.8 -2.3 transcriptional regulator compare
PS417_09580 -0.7 -1.7 tyrosyl-trna synthetase compare
PS417_07795 -0.7 -2.4 hypothetical protein compare
PS417_00510 -0.7 -0.9 membrane protein compare
PS417_22740 -0.7 -3.9 imelysin compare
PS417_17330 -0.7 -2.3 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_05165 -0.7 -1.3 cytosol aminopeptidase compare
PS417_28510 -0.7 -2.7 chromosome partitioning protein compare
PS417_02480 -0.7 -4.1 DNA mismatch repair protein compare
PS417_22705 -0.7 -1.3 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_09830 -0.7 -3.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_15435 -0.7 -1.7 metallophosphatase compare
PS417_03995 -0.7 -2.6 Fe(II)-dependent oxygenase compare
PS417_01605 -0.7 -0.7 phosphoglycerate mutase compare
PS417_19730 -0.7 -2.6 flagellar biosynthesis protein FliR compare
PS417_19805 -0.7 -2.2 flagellar M-ring protein FliF compare
PS417_09200 -0.7 -2.9 ABC transporter compare
PS417_07560 -0.7 -0.8 universal stress protein UspA compare
PS417_25730 -0.7 -3.3 phosphoglycolate phosphatase compare
PS417_22620 -0.7 -1.7 pyruvate kinase compare
PS417_21360 -0.7 -0.8 termination factor Rho compare
PS417_09625 -0.7 -2.0 sugar ABC transporter substrate-binding protein compare
PS417_21740 -0.7 -2.8 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_27435 -0.7 -4.3 polyphosphate kinase compare
PS417_03690 -0.7 -4.7 NAD-dependent dehydratase compare
PS417_04015 -0.7 -2.2 choline ABC transporter permease compare
PS417_11275 -0.7 -1.0 general secretion pathway protein GspG compare
PS417_11360 -0.7 -2.4 energy transducer TonB compare
PS417_02880 -0.6 -0.9 copper chaperone compare
PS417_24785 -0.6 -1.7 nucleoside-diphosphate sugar epimerase compare
PS417_04270 -0.6 -3.1 ribonuclease G compare
PS417_18710 -0.6 -2.4 hypothetical protein compare
PS417_13525 -0.6 -2.4 membrane protein compare
PS417_18800 -0.6 -1.1 hypothetical protein compare
PS417_19735 -0.6 -3.4 flagellar biosynthesis protein FliQ compare
PS417_22450 -0.6 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_12585 -0.6 -3.7 acriflavine resistance protein B compare
PS417_02040 -0.6 -1.5 3-hydroxylacyl-ACP dehydratase compare
PS417_02510 -0.6 -1.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_15705 -0.6 -1.2 nitrate reductase compare
PS417_02455 -0.6 -2.8 putative transporter, required for glycine utilization (from data) compare
PS417_27940 -0.6 -1.2 type VI secretion protein compare
PS417_26395 -0.6 -3.1 hypothetical protein compare
PS417_21595 -0.6 -2.1 flagellar biosynthesis protein FlgN compare
PS417_14455 -0.6 -1.5 polyketide cyclase compare
PS417_21400 -0.6 -2.3 TetR family transcriptional regulator compare
PS417_15255 -0.6 -2.4 serine/threonine protein kinase compare
PS417_15975 -0.6 -1.3 glutamate carboxypeptidase compare
PS417_09340 -0.6 -2.1 spermidine/putrescine ABC transporter ATP-binding protein compare
PS417_06140 -0.6 -1.8 cold-shock protein compare
PS417_05595 -0.6 -3.7 ornithine carbamoyltransferase compare
PS417_04375 -0.6 -0.8 ABC transporter ATP-binding protein compare
PS417_15805 -0.6 -1.0 transporter compare
PS417_21655 -0.6 -0.6 aspartate kinase compare
PS417_22700 -0.6 -1.9 RNA polymerase subunit sigma-24 compare
PS417_24135 -0.6 -0.9 hypothetical protein compare
PS417_17650 -0.6 -1.9 proteinase compare
PS417_05815 -0.6 -2.5 recombinase RecA compare
PS417_21320 -0.6 -1.9 transcriptional regulator compare
PS417_25710 -0.6 -0.7 indole-3-glycerol-phosphate synthase compare
PS417_02355 -0.6 -3.9 thiamine biosynthesis protein ThiC compare
PS417_18630 -0.6 -1.6 tRNA-dihydrouridine synthase C compare
PS417_15475 -0.6 -1.7 IclR family transcriptional regulator compare
PS417_07420 -0.6 -1.5 restriction endonuclease compare
PS417_03300 -0.6 -1.7 alanine acetyltransferase compare
PS417_13490 -0.6 -1.0 hypothetical protein compare
PS417_24030 -0.6 -1.2 MFS transporter compare
PS417_19850 -0.6 -2.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare


Specific Phenotypes

For 2 genes in this experiment

For solid stress Fraxetin in Pseudomonas simiae WCS417

For solid stress Fraxetin across organisms