Experiment set32S537 for Pseudomonas simiae WCS417
Fraxetin 1 mM; solid stress
Group: solid stressMedia: + Fraxetin (1 mM)
Culturing: fluoroDangl_ML3b
By: Max Stassen on 29-Mar-24
Specific Phenotypes
For 2 genes in this experiment
For solid stress Fraxetin in Pseudomonas simiae WCS417
For solid stress Fraxetin across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glutamate dehydrogenases | 1 |
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 1 |
| Oxidative stress | 1 |
| Photorespiration (oxidative C2 cycle) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glutamate metabolism
- Arginine and proline metabolism
- Tryptophan metabolism
- Methane metabolism
- Nitrogen metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamate degradation I | 1 | 1 | 1 |
| superoxide radicals degradation | 2 | 2 | 1 |
| methanol oxidation to formaldehyde IV | 2 | 1 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| L-alanine degradation II (to D-lactate) | 3 | 3 | 1 |
| ethene biosynthesis IV (engineered) | 3 | 1 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |
| L-glutamate degradation XI (reductive Stickland reaction) | 7 | 3 | 1 |
| 4-aminobutanoate degradation V | 7 | 2 | 1 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 6 | 1 |
| methylaspartate cycle | 19 | 10 | 1 |