Experiment set32S536 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 0.5 mM; solid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.0 -5.4 pantoate--beta-alanine ligase compare
PS417_27865 -4.0 -4.5 LysR family transcriptional regulator compare
PS417_28050 -3.7 -4.0 hypothetical protein compare
PS417_04365 -2.7 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27870 -2.4 -3.2 ATP-dependent DNA helicase RecG compare
PS417_00650 -2.3 -1.5 LysR family transcriptional regulator compare
PS417_06680 -2.1 -5.4 nuclease PIN compare
PS417_17035 -2.1 -1.9 Cro/Cl family transcriptional regulator compare
PS417_23810 -2.1 -9.1 acetolactate synthase 3 catalytic subunit compare
PS417_26605 -2.1 -1.9 malonate decarboxylase subunit beta compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_27195 -2.0 -1.6 N-acetylglutamate synthase compare
PS417_22570 -1.9 -1.2 H-NS histone compare
PS417_02555 -1.8 -10.0 exoribonuclease R compare
PS417_28070 -1.8 -6.3 phosphate ABC transporter ATP-binding protein compare
PS417_23380 -1.7 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_02880 -1.7 -1.9 copper chaperone compare
PS417_26775 -1.7 -7.7 thiazole synthase compare
PS417_06370 -1.7 -2.1 cold-shock protein compare
PS417_20855 -1.6 -1.8 hypothetical protein compare
PS417_10645 -1.6 -4.6 magnesium ABC transporter ATPase compare
PS417_02255 -1.6 -2.3 lipopolysaccharide kinase compare
PS417_01095 -1.6 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_07640 -1.5 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_10245 -1.5 -2.0 hypothetical protein compare
PS417_28080 -1.5 -9.6 phosphate ABC transporter permease compare
PS417_24605 -1.5 -3.0 thiamine-phosphate pyrophosphorylase compare
PS417_21625 -1.5 -1.3 DNA-binding protein compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_19730 -1.4 -4.5 flagellar biosynthesis protein FliR compare
PS417_16555 -1.3 -1.4 cupin compare
PS417_04390 -1.3 -2.7 toluene tolerance protein compare
PS417_11705 -1.3 -7.0 cyclic peptide transporter compare
PS417_27425 -1.3 -5.4 exopolyphosphatase compare
PS417_24600 -1.3 -6.0 hydrogenase compare
PS417_19675 -1.2 -3.5 chemotaxis protein CheY compare
PS417_03260 -1.2 -1.2 5S ribosomal RNA compare
PS417_09590 -1.2 -4.5 membrane protein compare
PS417_01605 -1.2 -1.2 phosphoglycerate mutase compare
PS417_23805 -1.1 -2.5 acetolactate synthase 3 regulatory subunit compare
PS417_28225 -1.1 -1.5 hypothetical protein compare
PS417_19955 -1.1 -1.5 hypothetical protein compare
PS417_07120 -1.1 -2.8 RNA polymerase sigma-H factor compare
PS417_02280 -1.1 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_02485 -1.1 -1.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_19850 -1.1 -5.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_06150 -1.1 -1.7 SAM-dependent methlyltransferase compare
PS417_21480 -1.1 -0.9 23S rRNA pseudouridylate synthase compare
PS417_10810 -1.0 -1.7 hypothetical protein compare
PS417_06895 -1.0 -3.1 DNA-binding protein compare
PS417_12595 -1.0 -2.1 transcriptional regulator compare
PS417_02975 -1.0 -2.3 3-dehydroquinate dehydratase compare
PS417_22450 -1.0 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_19350 -1.0 -2.7 GTP cyclohydrolase compare
PS417_01290 -1.0 -1.9 ADP-ribose diphosphatase compare
PS417_28075 -1.0 -3.9 phosphate ABC transporter permease compare
PS417_05975 -1.0 -0.7 chemotaxis protein CheW compare
PS417_01580 -1.0 -1.5 imidazole glycerol phosphate synthase compare
PS417_03830 -1.0 -5.3 protein disaggregation chaperone compare
PS417_03300 -1.0 -2.7 alanine acetyltransferase compare
PS417_01915 -1.0 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01620 -1.0 -1.6 preprotein translocase subunit SecB compare
PS417_27435 -1.0 -6.2 polyphosphate kinase compare
PS417_06710 -1.0 -1.7 beta-ketoadipyl CoA thiolase compare
PS417_27605 -0.9 -3.4 hypothetical protein compare
PS417_08410 -0.9 -1.8 hypothetical protein compare
PS417_23370 -0.9 -2.8 protoheme IX farnesyltransferase compare
PS417_02475 -0.9 -2.3 N-acetylmuramoyl-L-alanine amidase compare
PS417_14045 -0.9 -2.1 alkyl hydroperoxide reductase compare
PS417_13510 -0.9 -1.0 polyketide cyclase compare
PS417_09010 -0.9 -2.3 phosphohistidine phosphatase compare
PS417_21475 -0.9 -2.1 HAD family hydrolase compare
PS417_23725 -0.9 -2.5 methylmalonate-semialdehyde dehydrogenase compare
PS417_12015 -0.9 -2.1 phosphoglycerate mutase compare
PS417_07695 -0.8 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_19835 -0.8 -1.2 flagellar biosynthesis protein FliS compare
PS417_09615 -0.8 -4.0 glycosyl transferase family 1 compare
PS417_23775 -0.8 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_08170 -0.8 -5.4 capsular biosynthesis protein compare
PS417_15875 -0.8 -1.7 LuxR family transcriptional regulator compare
PS417_02695 -0.8 -1.4 protein hupE compare
PS417_04650 -0.8 -0.4 D-alanine--D-alanine ligase compare
PS417_23390 -0.8 -3.2 ubiquinol oxidase subunit II compare
PS417_19800 -0.8 -2.6 flagellar motor switch protein FliG compare
PS417_09210 -0.8 -1.5 TetR family transcriptional regulator compare
PS417_09085 -0.8 -1.3 hypothetical protein compare
PS417_19840 -0.8 -6.0 flagellar cap protein FliD compare
PS417_10265 -0.8 -1.9 peptidase compare
PS417_00510 -0.8 -1.0 membrane protein compare
PS417_00385 -0.8 -1.0 Fur family transcriptional regulator compare
PS417_06540 -0.8 -1.1 membrane protein compare
PS417_01280 -0.8 -2.2 peptidoglycan-binding protein LysM compare
PS417_13620 -0.8 -1.6 thermostable hemolysin compare
PS417_20985 -0.8 -0.5 porin compare
PS417_19665 -0.8 -2.6 flagellar motor protein MotD compare
PS417_21655 -0.7 -0.7 aspartate kinase compare
PS417_28085 -0.7 -6.3 phosphate-binding protein compare
PS417_23385 -0.7 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_00175 -0.7 -1.0 CigR compare
PS417_08135 -0.7 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07565 -0.7 -1.3 hypothetical protein compare
PS417_03995 -0.7 -3.5 Fe(II)-dependent oxygenase compare
PS417_26420 -0.7 -0.9 hypothetical protein compare
PS417_15465 -0.7 -2.5 carboxynorspermidine decarboxylase compare
PS417_19860 -0.7 -5.4 flagellar hook protein FlgL compare
PS417_12755 -0.7 -2.5 RND transporter compare
PS417_04270 -0.7 -4.4 ribonuclease G compare
PS417_22195 -0.7 -2.5 peptidase compare
PS417_19805 -0.7 -2.9 flagellar M-ring protein FliF compare
PS417_12535 -0.7 -1.2 nitrilase compare
PS417_18710 -0.7 -3.3 hypothetical protein compare
PS417_20030 -0.7 -2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_15975 -0.7 -1.4 glutamate carboxypeptidase compare
PS417_19755 -0.7 -1.4 flagellar motor switch protein FliM compare
PS417_05445 -0.7 -1.1 DNA mismatch repair protein MutT compare
PS417_24615 -0.7 -0.8 hypothetical protein compare
PS417_06635 -0.7 -1.1 ferredoxin compare
PS417_03000 -0.7 -2.4 translation initiation factor Sui1 compare
PS417_20880 -0.7 -1.7 GntR family transcriptional regulator compare
PS417_03465 -0.7 -1.3 type III secretion protein compare
PS417_16560 -0.7 -1.2 GNAT family acetyltransferase compare
PS417_07615 -0.7 -3.0 TetR family transcriptional regulator compare
PS417_24895 -0.7 -1.0 hypothetical protein compare
PS417_05815 -0.7 -2.2 recombinase RecA compare
PS417_02885 -0.7 -2.0 hypothetical protein compare
PS417_11940 -0.6 -4.3 TonB-dependent receptor compare
PS417_15805 -0.6 -1.2 transporter compare
PS417_02335 -0.6 -1.8 multidrug DMT transporter compare
PS417_13725 -0.6 -2.6 membrane protein compare
PS417_02720 -0.6 -0.7 TetR family transcriptional regulator compare
PS417_27245 -0.6 -1.1 aminotransferase DegT compare
PS417_15325 -0.6 -1.0 type VI secretion protein compare
PS417_09625 -0.6 -2.3 sugar ABC transporter substrate-binding protein compare
PS417_08050 -0.6 -2.6 amino acid amidase compare
PS417_19785 -0.6 -1.9 flagellar biogenesis protein compare
PS417_02575 -0.6 -2.1 membrane protein compare
PS417_01430 -0.6 -1.1 chromosome segregation protein SMC compare
PS417_01750 -0.6 -2.0 histidine ammonia-lyase compare
PS417_09705 -0.6 -2.1 hypothetical protein compare
PS417_00655 -0.6 -4.1 DSBA oxidoreductase compare
PS417_06145 -0.6 -0.8 hypothetical protein compare
PS417_06205 -0.6 -3.6 methionine aminopeptidase compare
PS417_28010 -0.6 -1.5 pyridine nucleotide-disulfide oxidoreductase compare
PS417_16275 -0.6 -2.0 hypothetical protein compare
PS417_23900 -0.6 -3.0 poly(A) polymerase compare
PS417_17430 -0.6 -2.8 aldehyde dehydrogenase compare
PS417_05590 -0.6 -2.9 iron ABC transporter ATP-binding protein compare
PS417_02480 -0.6 -2.9 DNA mismatch repair protein compare
PS417_12655 -0.6 -2.7 methionine aminopeptidase compare
PS417_27595 -0.6 -1.2 recombinase XerC compare
PS417_15290 -0.6 -2.4 type VI secretion protein compare
PS417_03730 -0.6 -1.4 phosphate acetyltransferase compare
PS417_15540 -0.6 -0.9 NUDIX hydrolase compare
PS417_22895 -0.6 -3.2 tyrosine recombinase XerD compare
PS417_05650 -0.6 -1.9 leucyl-tRNA synthetase compare
PS417_11430 -0.6 -3.1 EamA compare
PS417_08105 -0.6 -4.7 N-ethylammeline chlorohydrolase compare
PS417_20130 -0.6 -3.6 dehydrogenase compare
PS417_19935 -0.6 -1.1 hypothetical protein compare
PS417_11320 -0.6 -1.3 hypothetical protein compare
PS417_02415 -0.6 -2.1 phosphoserine phosphatase compare
PS417_19865 -0.6 -4.2 flagellar hook protein FlgK compare
PS417_08740 -0.6 -1.8 ribose-phosphate pyrophosphokinase compare
PS417_12585 -0.6 -3.5 acriflavine resistance protein B compare
PS417_15075 -0.6 -3.3 NAD-glutamate dehydrogenase compare
PS417_28515 -0.6 -1.6 16S rRNA methyltransferase compare
PS417_13255 -0.6 -1.5 ABC transporter compare
PS417_02865 -0.6 -2.4 peptidase compare
PS417_08580 -0.6 -1.8 histidine kinase compare
PS417_14210 -0.6 -1.3 hypothetical protein compare
PS417_00220 -0.5 -1.2 hypothetical protein compare
PS417_09930 -0.5 -0.7 hypothetical protein compare
PS417_10405 -0.5 -0.7 filamentous hemagglutinin compare
PS417_27835 -0.5 -1.8 endoribonuclease compare
PS417_24745 -0.5 -0.9 gamma-glutamyl phosphate reductase compare
PS417_19795 -0.5 -4.2 flagellar assembly protein FliH compare
PS417_12805 -0.5 -3.3 glycogen branching protein compare
PS417_23580 -0.5 -1.0 peptidylprolyl isomerase compare
PS417_14075 -0.5 -1.2 hypothetical protein compare
PS417_19885 -0.5 -2.7 flagellar basal body rod protein FlgG compare
PS417_14835 -0.5 -3.0 amidase compare
PS417_01955 -0.5 -3.6 peptidase compare
PS417_10015 -0.5 -0.7 hypothetical protein compare
PS417_15880 -0.5 -2.2 GNAT family acetyltransferase compare
PS417_14065 -0.5 -2.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_03515 -0.5 -1.1 type III secretion protein compare
PS417_12660 -0.5 -1.1 hypothetical protein compare
PS417_04385 -0.5 -1.1 organic solvent ABC transporter substrate-binding protein compare
PS417_18250 -0.5 -1.1 chemotaxis protein compare
PS417_11460 -0.5 -3.1 divalent metal cation transporter MntH compare
PS417_02070 -0.5 -0.7 membrane protein compare
PS417_08090 -0.5 -0.5 3-oxoacyl-ACP reductase compare
PS417_26635 -0.5 -1.5 hypothetical protein compare
PS417_08130 -0.5 -1.1 aspartate aminotransferase compare
PS417_14245 -0.5 -1.1 hypothetical protein compare
PS417_22445 -0.5 -1.1 ATP-dependent DNA helicase RuvB compare
PS417_05345 -0.5 -1.5 exotoxin compare
PS417_21595 -0.5 -2.1 flagellar biosynthesis protein FlgN compare
PS417_07940 -0.5 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in solid stress experiments

For solid stress Fraxetin across organisms